Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_034303035.1 |
| length | 1131 |
| RNA type | mRNA |
| GC content | 0.57 |
| exon number | 8 |
| gene id | asb5b |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 3307834 ~ 3325642 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0035556 | intracellular signal transduction | biological_process |
| GO:0016567 | protein ubiquitination | biological_process |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU46198 | lncRNA | upstream | 876747 | 2427812 ~ 2431087 (+) | True | G38962 |
| TU46183 | lncRNA | upstream | 881234 | 2411201 ~ 2426600 (+) | True | G38948 |
| TU46126 | lncRNA | upstream | 995383 | 2311651 ~ 2312451 (+) | True | G38895 |
| TU46052 | lncRNA | upstream | 1142349 | 2165170 ~ 2165485 (+) | True | G38826 |
| TU46035 | lncRNA | upstream | 1181167 | 2124070 ~ 2126667 (+) | True | G38812 |
| XR_004577844.1 | lncRNA | downstream | 75153 | 3400795 ~ 3403106 (+) | True | LOC117596855 |
| XR_004577906.1 | lncRNA | downstream | 189459 | 3515101 ~ 3525121 (+) | True | LOC117596918 |
| TU47566 | lncRNA | downstream | 189459 | 3515101 ~ 3525093 (+) | False | LOC117596918 |
| TU47719 | lncRNA | downstream | 357701 | 3683343 ~ 3685205 (+) | True | G40287 |
| TU47821 | lncRNA | downstream | 539054 | 3864696 ~ 3865000 (+) | True | G40374 |
| XM_026941131.2 | mRNA | upstream | 1511 | 3296533 ~ 3306323 (+) | True | LOC113543098 |
| XM_026933437.2 | mRNA | upstream | 54471 | 3193301 ~ 3253363 (+) | True | vegfc |
| XM_034302871.1 | mRNA | upstream | 1108299 | 2193949 ~ 2199535 (+) | True | LOC113541301 |
| XM_034302870.1 | mRNA | upstream | 1123186 | 2174587 ~ 2184648 (+) | True | LOC113544637 |
| XM_034302865.1 | mRNA | upstream | 1144142 | 2151929 ~ 2163692 (+) | True | dctd |
| XM_026938964.2 | mRNA | downstream | 25243 | 3350885 ~ 3353178 (+) | True | LOC113541782 |
| XM_026938973.2 | mRNA | downstream | 25243 | 3350885 ~ 3353178 (+) | False | LOC113541782 |
| XM_026938948.2 | mRNA | downstream | 25243 | 3350885 ~ 3353177 (+) | False | LOC113541782 |
| XM_034302843.1 | mRNA | downstream | 30780 | 3356422 ~ 3358975 (+) | True | LOC117596854 |
| XM_034302844.1 | mRNA | downstream | 30921 | 3356563 ~ 3357720 (+) | False | LOC117596854 |
| XR_004577910.1 | other | upstream | 1142050 | 2165623 ~ 2165784 (+) | True | LOC113546173 |
| TU45993 | other | upstream | 1216528 | 2085465 ~ 2091306 (+) | False | stox2a |
| TU45995 | other | upstream | 1216613 | 2085465 ~ 2091221 (+) | False | stox2a |
| TU45994 | other | upstream | 1216993 | 2085465 ~ 2090841 (+) | False | stox2a |
| TU45964 | other | upstream | 1310582 | 1983657 ~ 1997252 (+) | False | cdk2ap2 |
| TU47789 | other | downstream | 506307 | 3831949 ~ 3834611 (+) | False | LOC113545357 |
| XR_003404319.2 | other | downstream | 1937940 | 5263582 ~ 5356697 (+) | False | znf827 |
| TU48562 | other | downstream | 1992892 | 5318534 ~ 5341750 (+) | True | G41047 |
| TU49753 | other | downstream | 3878308 | 7203950 ~ 7221023 (+) | True | G42075 |
| XR_003404394.2 | other | downstream | 4323556 | 7649198 ~ 7666033 (+) | False | naa15b |
