RNA id: XM_026941281.2


Basic Information

Item Value
RNA id XM_026941281.2
length 4845
RNA type mRNA
GC content 0.47
exon number 12
gene id si:ch211-113e8.3
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 7361915 ~ 7384163 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCGTGTCGAGGCCATTGCGCGCGGATCAGGGCGCGAGGAGCAAACCAGCTGCTTTATCACTGAGTGAAACAGGATTTTGCTCCTTCACTGCCCCCAGCATGCAGCGCGGTGCAACTACTGTACACATCAGATACAACACATTGGTGGAAGAAGACTTTTAGTCCATAtattgtgctgccaaaacaccACAGACTGAAATTATGGGAATAAATAATCTACACAGTTAAACTAGCACTCTTCAGAATTGGACTGGAACTTCATATCTTCCAACACTCTTTACAAGTGCACTGTGTGAAATACTGGCATTTAGATTATATGTAGTGCACGATCATGTGCATTAGGGATTTATTTGGGATTCACGCTCAATTGAACGGGAGCTCGGAGCTGCTCGCACTGCGCATGCGCCACTCCCCGGCGTCCCTATATCCCTCCCTTTACAGGCGCGCCCCGaatcctgaccaatcagagcgcaggaTTAGCCAACGATTTGGCCGTGGCCGAGACAAGCCGACGGTGATCCGAAGATGGGCCGAGGAGGAAAAACGCGACCAAGGTTGGAAGATTAACGACCGCAGCATCGGCTAATTCCGACTTCCTGTATTTCCAGGTgtttgaagagagagagagattgtggaAATCAGCAGCTCTGGTGTATTTGCATTGGAGACAtggacaggaggaggaggattagGAGTGTTTATCTCTAGCCTTGACCAATCCCAGCCAATGAGACCTTCATTACACACTTACTGTCTTTTCCATCCTAGGAGTGCACATACCTATCAGGTTTACAAAGGAAAGTAACCAAAGGgtgatcacacacaccagagGACCCAAGACCAGAGGCTTGAGATGAAATCAAACCTGATATACCCTgccaatgaaaaaaattatgaaaattaatctGGGATTTAAAAATCCTGACTGCAATCCTTTGACGTGTGTTTAGTAAAAGTGTGCTCATCACTAATAATTTTTCCTCTTCTGGAATACGGACGTGTATGGACATCCCCCAAAGAGCCGGGACGCTGATTCAACGACAGGGTTATTCGTATTCACTGGGCCATGGGGCGAGTGTCCAATAGGACTTCATCGTAACCTACATTTGTGTCCATCATTATGGATCAGGATGAGACGAGCGCAGAGATTTGGGAGCCGCCTCTGCATGGACTCCACGGGCCAAACCGCATGCGGCCTTCCTCGTACCGGGCTCTGCGGAGTGCTGTGTCGAGCCTGGCACGAATCGATGATTTCTTCTGTGAGAAGATTGGCTCTGGTTTCTTCTCTGAAGTTTTCAAggtcCAGCACAGGATCACAGGGCAGGTGATGGCTCTGAAGATGAACACGCTAGCCAGCAACAAAGCCAACATGCTGAGAGAAGTGCAGCTAATGAATCGCCTCTGTCATCCCAACATCCTCagGTTTTTGGGCGTGTGTGTCCATGAGGGACAACTTCATGCTCTAACTGAGTACATCAATGGGGGAAATCTGGAGCAGCTGCTGGACAGTGATATATACTTATCCTGGGCTGTGAGGATAGGACTGTCTCTGGACATTGCACGAGGACTACAGTACCTTCACAGCAAGGGGATTTTCCACCGAGACCTCACTTCtaagAACTGTTTAGTGCGCTGTGAGAACGGTGTTTTCACGGCTGTGGTTGGAGACTTTGGTCTGGCGGAGAAAATCCCCGATTAcagTGATGGAATGGAGAAGCAGCCTCTGGCCGTGGTTGGCTCCCCCTACTGGATGGCTCCGGAAGTGCTGAGAGGAGAGCTTTACGATGAGAagGTGGATGTTTTTGCGTATGGCATCATTCTGTGTGAGATCATTGCTCGGATCGAGGCCGACCCAGACGTCCTCCCTCGAACAGAGgACTTTGGACTGGATGTTGAGACCTTTGAGCAAATGGTTGGAGACTGTCCACCTGCTTTCCTTAGTCTCGCTGTTAACTGCTGCAACATGTGTGCAGAGAGTCGTCCTTCCTTCTGTGACATTGTTGTGACCTtggagaggatggagagggagagggagaagacTGAGACACCAGTTATTCTAGAACCTGTTGCTGCTGATGAGAGCCCATACAGGAGGCGGAGTTCACCGTGCCAGCTGGGCACCCAGCGCCTGGCGCGGAGTCAGTCAGCCCTGTTGCCACCGGCCTCGAGTCCATGTGTGGGTACACCGGTGCGCCTCAACCCCTTCTCCTTACGCCATGACCTGAACGGCGGCCGCATCAAGCTCTTTGACACACCCAGCAAGTCACTTATCTCCCTGACCTTCACTTTGCCCCCGCCCCCTGAGCCCTCCTCCTCTCCACCACTGTGTGGAGCCTCAAAGCTTCGAGGCCCACCTCGCCGGTGCCGGTCCTTACCCTGCACTCCTGAACTGGGTCGACCTTTGACCTCATTCCATGAGCCTGAAACTGAAAGTGTGGAGGAGaaggatggagaaaaagaaaagacaggaaaGGAGACAGCTGGCTCAGATGATGCTGGACAGGACCCTGGCTTGGTGCTGGATCTGGAGATGGTGTCTTTGGAGCGGGtggatgaagaggaagaagatgaggaggaggaaaaagaaggagaggTGGAAGAAAACTGTCGGGTTGAACCCATGGACTGCAGTAGCTCCTCTGATGGAGCAGAGGGTGCCCTGAGATCAATAGCAAAGCCCCTCCTTCATGGTTCTtattcatcctcctcttccttcagCCCTCAGCCTAATGGCTGGACAGTACCCATTTCAAATGGCCCTCCATCCCTTCCACCCCTGCCCCGCCTGGACAATAACAACAGCATGCTGGGAGTTGGCCGTGTCCCTTGGGTGCGGCTCAGTGGCTACCGTGGTCACCGTGCTCCCAGCCGTCTGGCACCTCCTCCCGAACAGgatgacatcatttcctgtcCAGGCTGTTGCCTTGTGGGCTTTAGCTTTCCATCGGTGTGCCTGCGTGGAGCCCCGCCTCCTCGCCGAACCCCACCCCTCCGCGCATACAGGAATCTTAATGGGGGAGAGGCGGCAGCTGGGAGGTCAAACAACGGACTGATGTGCCGAGGAGCAAAGGGTCTGGCTCCACCCACCATGACATGCGAACCGGGTTTGCCACTTCCAGAGGCACAGACGTAGTTAGAGTGCCCTCTTGAGCGCTAACGCAACACAGTGCACATGTGCTAACCTTGGCACTGTGCCTGTCCCAATAACCACTACGGTTAGACTATTAGTGCTAATGTGCAGTGAGGATGTAAGAGATGGTGTGTTGGCATCTtagggtgtatgtgtgtgtgtgagaggaagagaaagatagagaaagGTGAAGTGTTatagaaagacaaacagatgtACAGTATGGAAAGACTGGCTGTGCTACTTTAGGTTACTAACTAAAATCTTTTGTGATGAATTGGGAGAAGGTGCTATTTTAGCCACATTAGACCTTCAGCTTCATAAGCCACTgtggcaaagtgtgtgtgtgtgtgtgcgtgtgtgtgcctgagagagagagagaccatgtATAAATGTGATGGCaattcaagtttatttatttgtaaaaaaaaaaaaaaaaaaaaaaaaaaaacactctcatCCAAAACTGAGGATTAAAAGATATAATagtgagagattgtgtgtgtgtgtgtgtgtgtggagaaagtCTAAAAGTTGTTTATATGTCTAGAAGCTACGTGTGCAATAAGTCACCATTGATTAACAAAGCTGTACATactgtttcattctttttttaacgGAGAATGCACCATTTTTAATCTGATAGAAACATGGGATTGCTTGTGTTTTAAAGGCTGTCATTTTTACTGTCACCCTCTAGAGACACAGAGGATTCTTGCTGGTCAGGTTTTTTGCTGCTTGTTAAAGTACTCTTGTGTACGTGTATTTACAGATTGCAAAACCAGATCACACAGGATGGACTGTTCCCActtcaaaatgtttttagaaaaagatttttctatttgaaactgtaatgtaaatcaTGTGCAGGGTTGTGAGTGAAACTGTCAACATGAGTCATATTCAAACTGATGAAGGTTTAGTCATTTTTACAAGATGAAAATTGTAATGAAATCGTAATTGTAATGAAATCTTGAAAAAGACGCAACATGTCCTGTGTGTTCTGGTTCACTCCCCATCTGATGTAACAGCATGATTTTGAACTTAACCTCATGAGTCCATCCAAAGAGTTCACTGAAGCTTGCGTAAGTCCACCTGCCCATGATGTGAGTGCTGAAAGCCTGTGCATGCAGACTGTGCAAAACACTACACTATAACGCAACACGGTGCTTCTCTGCATAGTGCTTTTTAGGCTAAGGGTATGCCTAAAGAGGCTCTGTTTCCATTTTTCATATCTACCAGAAAGCCTTGTTTGACAATGAGATGTTTCCCTggttaaatggaaaaaagtgctCTTCCCAAAACCAATTGAATTTGCAAATGCAAGATGAAATTTAACTGCAAGTTAAAGTTAAAACAACAACCTGTGCTGGTCAATCAAAAGTTGATTTGATGAATCTGTTTTGTATGGAAAGTGTTAATCTGACCATAATATATGACCATAATCCATACTGAAGCTATGGAGTTTGTACAGTTTAGTTATAATTTCTATCTCTTGGATAATAATGGAAGCTTGTGATTGACATGATGGATGTAAAGGCTGAATTACATTTGATTCCTaagtgtgtatttactgtgtaaAGGTTAGCTCTTCCCCATAAAAAGCACTTAGCACAAAGATTATCATCATCAGTTCTGGGGAAAATTagctttaataaatgttaatgatttatgtaatttattaaactgttttcaacattaaaatattgacTGTAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49892 lncRNA downstream 19234 7342467 ~ 7342681 (-) True G42179
TU49878 lncRNA downstream 46319 7313668 ~ 7315596 (-) True G42173
XR_004577839.1 lncRNA downstream 219613 7141099 ~ 7142302 (-) True LOC117596848
TU49679 lncRNA downstream 344510 7016765 ~ 7017405 (-) True G42008
TU49614 lncRNA downstream 349609 7012093 ~ 7012306 (-) True G41944
TU50043 lncRNA upstream 52279 7436442 ~ 7438889 (-) True G42315
TU50045 lncRNA upstream 54875 7439038 ~ 7439236 (-) False maml3
TU50091 lncRNA upstream 184208 7568371 ~ 7652220 (-) True G42361
TU50124 lncRNA upstream 287424 7671587 ~ 7672864 (-) True G42391
TU50125 lncRNA upstream 291325 7675488 ~ 7675772 (-) True G42392
XM_034302879.1 mRNA downstream 23484 7325374 ~ 7338431 (-) True LOC113542008
XM_034302880.1 mRNA downstream 23484 7332429 ~ 7338431 (-) False LOC113542008
XM_034302878.1 mRNA downstream 23540 7326874 ~ 7338375 (-) False LOC113542008
XM_026939243.2 mRNA downstream 31813 7326874 ~ 7330102 (-) False LOC113542008
XM_034302881.1 mRNA downstream 31839 7326874 ~ 7330076 (-) False LOC113542008
XM_026941246.2 mRNA upstream 54741 7438904 ~ 7589663 (-) True maml3
XM_026941317.2 mRNA upstream 246006 7630169 ~ 7646075 (-) False clgn
XM_026941308.2 mRNA upstream 246006 7630169 ~ 7646029 (-) False clgn
XM_034302632.1 mRNA upstream 246006 7630169 ~ 7644903 (-) True clgn
XM_026941398.2 mRNA upstream 318489 7702652 ~ 7715901 (-) True zgc:153642
XR_004577908.1 other downstream 157764 7161474 ~ 7204151 (-) False lef1
XR_004577909.1 other downstream 157764 7161474 ~ 7204151 (-) False lef1
XR_004577821.1 other downstream 1542402 5756711 ~ 5819513 (-) False gab1
TU48529 other downstream 2133992 5203706 ~ 5227923 (-) False lsm6
trnam-cau_1 other upstream 1082821 8466984 ~ 8467055 (-) True trnam-cau_1
trnam-cau_2 other upstream 1083873 8468036 ~ 8468107 (-) True trnam-cau_2
trnam-cau_3 other upstream 1084908 8469071 ~ 8469142 (-) True trnam-cau_3
trnam-cau_4 other upstream 1085823 8469986 ~ 8470057 (-) True trnam-cau_4
trnae-cuc_7 other upstream 1086195 8470358 ~ 8470429 (-) True trnae-cuc_7

Expression Profile