RNA id: XM_026941359.2


Basic Information

Item Value
RNA id XM_026941359.2
length 2868
RNA type mRNA
GC content 0.46
exon number 10
gene id htra3a
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 7680769 ~ 7694527 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gagagagagagatttctcaCAAGTTGTATAGCTGAGCATttgagaaggagagaagaaacAGCTCTGCTTCTGTACTACAGGCGACACACAGTATGAAACGGATTATGAATGGTTTGTGAAGATGATTCAGCTTCACTCATGACTCTGGCTGGCACGGTGACTGTGCACGCGCTGATGTGAGGAAATGTGATTTCTTCACGGACTTTTCACCACACCACCTCAGTTCACTGGTCTGACCACAGGATGCGCGCGTTGCTTTTCGCGGTGCTTTTCGCGCATGCCCTCGCAGGACCCGAAACGCGCGCGCCCTGCCCGGCCACGTGCGACATGACCAAGTGCCCGGCGCCGCGTGCTGCATGCCAGGGCGGGCGCGTGCTGGACCGGTGCGGCTGCTGCGCGGTGTGTGCTGCGGGGGAGGAGGGGGCAACCTGCGGGCGCAAGCGTGATGCTCCCTGCGCCTCGGGGCTGGAGTGCGTGCGCTCCGGGGCAAAGAGATCCTCTAAGGGGGTTTGCCGGTGTAAGAGCGGTCACCCGGTGTGCGGCAGCGATGGTAAGACTTATGAAAGCCCGTGCAGGCTGGAGGCGGCCGGTCGCAGAGCGCGGCAGCGGGGGAACGCTCCGGTAACGCGCGCGCACAAAAATCAGTGCGCATCTGCAGCTCCAGGTCCCACACACCACAACAGCCCCAGGTACAAGTTTAACTTCATCGCTGATGTTGTGGAAAAAATCGCGCCAGCTGTGGTCCATATCGAGCTTTTCCTCAGCCATCCGCTGTTTGGCCACCACGTGCCGTTGTCCAGCGGTTCAGGGTTCATCGTGACAGAATCTGGTGTGATCGTGACTAACGCTCATGTGGTGAGCAGCAGTGCCACTACAGCGGGCCGACAGCAGCTTCGGGTGCAGCTTCACGATGGCAAAACGTACGAGGCCTCCATAACAGACATCGACAAGAAGTCTGACATCGCCACCATCAAAGTCAACCCTCGGAAAAAGCTTCCAGTTCTTCCTCTGGGCCACTCAGCTGACCTGCGCCCGGGCGAGTTCGTGGTGGCCATTGGCAGTCCGTTCGCTCTGCAGAACACTGTAACTACAGGCATCGTGAGCACGGCACAGAGAGACGGCAAGGAGCTCGGCATCCGGGACTCAGACATGGACTACATTCAGACTGACGCCATCATCAATTATGGAAACTCAGGAGGCCCACTTGTTAACCTTGATGGTGAGGTTATTGGGATAAACACACTGAAGGTGACAGCTGGGATCTCCTTTGCCATTCCATCAGACCGTATTAATCGATTTCTAGACGAATCTTATGATAAGCAGTACAAAGATAAACAGAGACTACTTAGGCTGCAGTACACGCCATCTCAGCCTGTGGTGTCTGACTCAGATGTAAAAGGCACAAAGAAAAGATTTCTTGGAATCAGAATGATCACCCTCACAAAAGAcctgGTTAAAGAGATGAAACAGCACGATCCATATTTCCCAGATATCAGCAGTGGAATTCTTGTTCATGAGGTCATTCCAGATTCCCCTGCGCAAAAGGGTGGACTTGAAGCAGGTGATGTGATTGTGAAACTAAATGGCCGTCCATTGGTCAGCACTGATGATATCCAGTTGGCGCTTCATGGAGACATGGCCCTTCTTTTGGAAATTCATCGTGGCAACAATAGTTTTCTATTCAACATTGAACCACGTGTCCTTGTGcagaaataaatagtaaaataaaggTTTACTAGAAAACTGGTGTGGATTGAGAAAACTGGTGTGGATTGAGACGACATTAGGTCAAGTCAAGTCAgttggctttattgtcatttcaaccatatacagctagttagtacacagtgaaacgaaagaacgttcctccaggaccatggtgctacatcaaacaacacagaactacacatGTAGAGCCTACACATCTCTACTTAAAGTGCACGTGCAAATGTgcgcaaacagcacaagacagtacaatatctactaaaacaggacaataggcacagttcGAGACAGTGCAGCACCGACCAGTACGCTgttctagtatgaaagtgtcagatataacagtagtgcaaaagaataacaatataataaattgctatgaatgtaaacataacatactatgacatagtattcgGCAAataagcttataccatatatgggCTTGGCATTtgttggggtagcagccaggtagaaaGTATAGCAAGAATAAAGAcaagaaattatatacaatattttataaatacaatacCAGCAACAAAATGTAGGTactaaatacagaaatgtgctaaaattgcaaagggagtgggatggtgttcagttgagtatgaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtagtgtgtgttgAATTAAAAGTgcgattgtttttttttaaattttgtatgGATGAGAAGATGGAGGCTACATATGAACAAGTGAACACTCACTGtaattgtaactgtaaaagtgcagttaagATATGCCATGTATTAATGACCAGAGAACATCATTGTAAATGATGACTAGGATTTTACAAGTTTCTCTGAATTCAACTGAAAACTCAgactttacattattttatattcagattTTGACATACAGTCATACAGTCACTGGAGCCAAATGTCTGTCTTTAAATCCTAAGTCCCCTCACTGTATTCACTACAAACTACCTGAAAATGTTCTTTGATATAACTTACGAAATAcactattttaaacatattttaaactgACAGGCTGAGATATGTTCTTGGCTACATACAGTAGCATTGTAGTACAGTGTTAATAATTTATGTGCTGTTTATCACACCAGTGCAAGCAGGTCTTTCTATATACACTAGCATGtatatttttta

Function

GO:

id name namespace
GO:0001558 regulation of cell growth biological_process
GO:0006508 proteolysis biological_process
GO:0005576 extracellular region cellular_component
GO:0005520 insulin-like growth factor binding molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K08669 HTRA2, PRSS25; HtrA serine peptidase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50015 lncRNA upstream 35847 7640935 ~ 7644922 (+) True G42295
TU50006 lncRNA upstream 50664 7624869 ~ 7630105 (+) False scoca
XR_004577840.1 lncRNA upstream 205729 7473370 ~ 7475040 (+) True LOC117596850
TU49923 lncRNA upstream 258473 7422091 ~ 7422296 (+) True G42208
TU49791 lncRNA upstream 315838 7361200 ~ 7364931 (+) True G42098
TU50029 lncRNA downstream 27122 7721649 ~ 7721851 (+) True G42304
TU50032 lncRNA downstream 38915 7733442 ~ 7733655 (+) True G42307
TU50188 lncRNA downstream 172148 7866675 ~ 7866918 (+) True G42442
TU50193 lncRNA downstream 214897 7909424 ~ 7909698 (+) True G42447
TU50268 lncRNA downstream 480958 8175485 ~ 8176073 (+) True G42522
XM_026941415.2 mRNA upstream 2910 7675236 ~ 7677859 (+) True LOC113543305
XM_026941266.2 mRNA upstream 9359 7649211 ~ 7671410 (+) True naa15b
XM_026941437.2 mRNA upstream 50629 7620545 ~ 7630140 (+) True scoca
XM_026941427.2 mRNA upstream 50629 7620555 ~ 7630140 (+) False scoca
XM_026941445.2 mRNA upstream 50629 7624846 ~ 7630140 (+) False scoca
XM_034302952.1 mRNA downstream 9922 7704449 ~ 7712546 (+) False LOC113543264
XM_034302950.1 mRNA downstream 9922 7704449 ~ 7707685 (+) True LOC113543264
XM_034302951.1 mRNA downstream 9922 7704449 ~ 7707685 (+) False LOC113543264
XM_034301226.1 mRNA downstream 21513 7716040 ~ 7735909 (+) True LOC117596357
XM_026943765.2 mRNA downstream 55109 7749636 ~ 7755159 (+) True gpr78a
XR_003404394.2 other upstream 14736 7649198 ~ 7666033 (+) False naa15b
TU49753 other upstream 459746 7203950 ~ 7221023 (+) True G42075
XR_003404319.2 other upstream 2324072 5263582 ~ 5356697 (+) False znf827
TU48562 other upstream 2339019 5318534 ~ 5341750 (+) True G41047
TU47789 other upstream 3846158 3831949 ~ 3834611 (+) False LOC113545357
TU50445 other downstream 771220 8465747 ~ 8466312 (+) True G42685
trnak-cuu other downstream 775097 8469624 ~ 8469696 (+) False trnak-cuu
TU52056 other downstream 2857732 10552259 ~ 10558295 (+) True sprn
XR_004577889.1 other downstream 2900047 10594574 ~ 10608704 (+) False LOC113543929
XR_004577793.1 other downstream 3405066 11099593 ~ 11171114 (+) False dntt

Expression Profile