RNA id: XM_026941398.2


Basic Information

Item Value
RNA id XM_026941398.2
length 1943
RNA type mRNA
GC content 0.39
exon number 3
gene id zgc:153642
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 7702652 ~ 7715901 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttttaaaaactaacACTAAAGGAAGACACTATCAACTGCAACAACAATGGCTGTCTCTGGTAAATATCCATTGCGCTTGATCCTCCTGGGCAAGACAGGGGTTGGCAAAAGTGCCACAGGAAATATCATTCTGGGAGAGAAAGTATTCAGGTCTGAAGCTAGAGCCATGTCTGTTACACAGGAATGCACATCTGAAACAAGAATAATCAACGAACAAAGTATTACAATCATTGACACACCCGGTTTATACGACACAACAATGTCTTCTGATTTCATTGTAAAAGAGACTGTGAGAGGCATGCAACTGGTAGCTCCTGGTCCTCATGCATTTCTTCTTGTGCTTGATGTGAGGCGTCACACTGAAGAGGAGAGAAACACTGTCAAGAAATTTCAAGAAATCTTTGGTGGTGATGTGTGCAAGCATATGATTGTGGTGTTCACTCATGGAGACGATCTTGAGTTTGATAATAAAACCATAGAACGCTACATCAATGAGGCTGGGCCTCACCTTCAGGACCTGATATATACATGCGGACAGAGGTACCATGTGTTTAACAACAGGTCGCAGGACCGCACGCAGGTAGTTCAATTCCTGCAGAAGATTAACAATATGCtgagtgaaaaaaatcatagttACTATAGCTATGAACTgtttacaacagcagaagctcTCAAAAAGGCGGAAGCAAATCAAAgagagtgggaaaaaaaatttgcagCTTTGGAGAGTGAAGTGCGGGctatgaatgaaaaaaacagcttatgCATTATACTATACTGTCAAAAATATGAGCTAAACCAgcaaacatttttgtttcatcttaCAGATAACTATCCATTGCGCTTGGTCCTCTTGGGCAAGACAGGGGTTGGCAAAAGTGCCACAGGAAACACCATTCTGGGTGAGAAGCTATTTGTGTCTGACATAAGAGCCACATCTGTTACAAAGGAATGCACATCTAAAACAAAAGTAATCAACGAACGAAGTATTACAATCATTGACACACCTGGTTTATACGACACAACACTGTCTTCTGATTTCATTGTAAAAGAGACTGTGAGAGGCATGCAGCTAATAGCTCCCGGTCCTcatgcttttcttcttctgcttgaTGTGAGGCGTCACACTGAAGAGGAGAGAAACACTGTCAAGAAATTTCAAGAAATCTTTGGTGGTGATGTGTGCAAGCATATGATTGTGGTGTTCACTCATGGAGATGATCTTGAGTTTGACAATAAAACCATAGACCAATACATCAATGAGGCTGGGCCTCACCTTCAGGACCTGATATCTTCATGCAAACAGAGGTGCCATGTGTTTAACAACAGGTCAAAGGACTACACCCAGATAGATGAATTCCTGAAGAAAGTTTACAAGATGCTGAGTGAAAACAATCACAGTTACTATAGCTATGAACTGTTTAAATATGCGCAGGAGCTCAAAGAGgcaaaagagaatgaaagacaAAGGGAACGAAGATTGGCAGAATTGGAGAAACAAGTGcggaaactgcaaaaaaaaagcaacttatGCATTATACAATAGTGGAGAATGTATGATATCTTCTATTATGAGTGTCTTACTGTCTAAATTTCATACAgcgtactgtatattataatgtgGTATATTCTAAATGTGGGGAGTTTTGTAGAGCATGTATATTGTTTATCTAGAATTAAGGGAGGAATTCTGAATGTTTCAGGTCAACTGAAAAAAGTAGAGAGTCTTTTAATGCCgtaaatgtatgtatgtcaTGTAGCATAATGTATATTGTAATGTGGTATAATCTATACAAAAATAGCACACCTACAACCCAAAAGGTAGTTTAAGATGTGTTAAGCTGTTTCAAAGAGGAAAGTACTGATAATTTTGAAGGATTTTTCTGTCAAATGTTAATTCTggtgtcaaataaataaatcatttaatgaaACTAATAGCACTA

Function

GO:

id name namespace
GO:0060485 mesenchyme development biological_process
GO:0048368 lateral mesoderm development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50138 lncRNA downstream 8159 7693418 ~ 7694493 (-) True G42401
TU50137 lncRNA downstream 8671 7693214 ~ 7693981 (-) False G42401
TU50136 lncRNA downstream 11625 7690711 ~ 7691027 (-) True G42400
TU50133 lncRNA downstream 14963 7687297 ~ 7687689 (-) True G42397
TU50131 lncRNA downstream 21222 7680820 ~ 7681430 (-) True G42395
TU50169 lncRNA upstream 104749 7820650 ~ 7820861 (-) True G42426
XR_003404555.2 lncRNA upstream 261240 7977141 ~ 7979763 (-) True LOC113544822
TU50364 lncRNA upstream 425150 8141051 ~ 8148022 (-) False rgs12b
TU50394 lncRNA upstream 473834 8189735 ~ 8190276 (-) True G42642
TU50402 lncRNA upstream 488296 8204197 ~ 8204405 (-) True G42650
XM_026941317.2 mRNA downstream 56577 7630169 ~ 7646075 (-) False clgn
XM_026941308.2 mRNA downstream 56623 7630169 ~ 7646029 (-) False clgn
XM_034302632.1 mRNA downstream 57749 7630169 ~ 7644903 (-) True clgn
XM_026941246.2 mRNA downstream 112989 7438904 ~ 7589663 (-) True maml3
XM_026941281.2 mRNA downstream 318489 7361915 ~ 7384163 (-) False si:ch211-113e8.3
XM_026943612.2 mRNA upstream 107229 7823130 ~ 7825476 (-) True hmx4
XM_026943559.2 mRNA upstream 110733 7826634 ~ 7829546 (-) True hmx1
XM_026942712.2 mRNA upstream 191327 7907228 ~ 7909974 (-) True adra2c
XM_034301237.1 mRNA upstream 337593 8053494 ~ 8069324 (-) True LOC117596360
XM_026945007.2 mRNA upstream 367150 8083051 ~ 8123270 (-) True dok7
XR_004577908.1 other downstream 498501 7161474 ~ 7204151 (-) False lef1
XR_004577909.1 other downstream 498501 7161474 ~ 7204151 (-) False lef1
XR_004577821.1 other downstream 1883139 5756711 ~ 5819513 (-) False gab1
TU48529 other downstream 2474729 5203706 ~ 5227923 (-) False lsm6
trnam-cau_1 other upstream 751083 8466984 ~ 8467055 (-) True trnam-cau_1
trnam-cau_2 other upstream 752135 8468036 ~ 8468107 (-) True trnam-cau_2
trnam-cau_3 other upstream 753170 8469071 ~ 8469142 (-) True trnam-cau_3
trnam-cau_4 other upstream 754085 8469986 ~ 8470057 (-) True trnam-cau_4
trnae-cuc_7 other upstream 754457 8470358 ~ 8470429 (-) True trnae-cuc_7

Expression Profile