RNA id: XM_026941456.2


Basic Information

Item Value
RNA id XM_026941456.2
length 737
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC113543333
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 7413508 ~ 7420929 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gTCAAGAGCGCAGCGCGCGACTCTTCCATGCAGTTCAGTTAGATCTGGCGGAGGAGCTCAGAAGCTGGAACAGGAAGTTTTtacttctttgtttttaatctataataaataatcatcatGATCATCGTAATTGAGGATCAGGCAGCTTTTGATAAAGCTCTGGCTGACGCAGGTGATAAGCTTGTTGTGGTGGACTTCACAGCCACTTGGTGTGGGCCTTGCCAGAGTATCGCTCCCTTCTACAAAACACTGTCTGAAGAAGCAGGTAATGCCAACGTGGTCTTCCTCAAGGTAGATGTGGACGATGCACAGGATGTGGCTCAGTCCTGTGAGATCAGATGCATGCCAACATTCTACTTTTACAAGAACGGAAAGAAGGTCACGGAGTTCTCTGGGTCCAACCAGACGAAACTGGAGGAGCTGGTGAACACCTATAAATGAACCCTGAGAAATGTGTGAAGcatgaattataaatataagctTGACCCAAACACACCTGTTGTCAATCCCATAGATTTTTCTAACAAGCACTCATTATCTTGCTTAATGAACTTTTGATGCCCTGACAGATGAGCTGTAGAAATAGTATGTTCAAACAGTATGCCTTACTCAATTCACTGTATTGCCATAAttattacagctttttttttaaaaaccatgtAACTCAACAAGTTTATTCCAAGAAAACTAACCTGGGTCATTGAAATCAGGTTTAATAAACACAGATCTACAGAATA

Function

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0006662 glycerol ether metabolic process biological_process
GO:0015035 protein disulfide oxidoreductase activity molecular_function

KEGG:

id description
K03671 trxA; thioredoxin 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49784 lncRNA upstream 19724 7348159 ~ 7393784 (+) True G42093
TU49791 lncRNA upstream 48577 7361200 ~ 7364931 (+) True G42098
TU49621 lncRNA upstream 396583 7016704 ~ 7016925 (+) True G41951
TU49521 lncRNA upstream 444669 6951392 ~ 6968839 (+) True G41857
TU49390 lncRNA upstream 710702 6662282 ~ 6702806 (+) True G41752
TU49923 lncRNA downstream 1162 7422091 ~ 7422296 (+) True G42208
XR_004577840.1 lncRNA downstream 52441 7473370 ~ 7475040 (+) True LOC117596850
TU50006 lncRNA downstream 203940 7624869 ~ 7630105 (+) False scoca
TU50015 lncRNA downstream 220006 7640935 ~ 7644922 (+) True G42295
TU50029 lncRNA downstream 300720 7721649 ~ 7721851 (+) True G42304
XM_026941379.2 mRNA upstream 5392 7396425 ~ 7408116 (+) False LOC113543274
XM_026941387.2 mRNA upstream 5392 7397999 ~ 7408116 (+) True LOC113543274
XM_026941346.2 mRNA upstream 20261 7384072 ~ 7393247 (+) True faah2a
XM_034301211.1 mRNA upstream 54947 7356734 ~ 7358561 (+) True LOC117596353
XM_034301187.1 mRNA upstream 56815 7354068 ~ 7356693 (+) True LOC113541239
XM_026941437.2 mRNA downstream 199616 7620545 ~ 7630140 (+) True scoca
XM_026941427.2 mRNA downstream 199626 7620555 ~ 7630140 (+) False scoca
XM_026941445.2 mRNA downstream 203917 7624846 ~ 7630140 (+) False scoca
XM_026941266.2 mRNA downstream 228282 7649211 ~ 7671410 (+) True naa15b
XM_026941415.2 mRNA downstream 254307 7675236 ~ 7677859 (+) True LOC113543305
TU49753 other upstream 192485 7203950 ~ 7221023 (+) True G42075
XR_003404319.2 other upstream 2056811 5263582 ~ 5356697 (+) False znf827
TU48562 other upstream 2071758 5318534 ~ 5341750 (+) True G41047
TU47789 other upstream 3578897 3831949 ~ 3834611 (+) False LOC113545357
XR_004577910.1 other upstream 5247724 2165623 ~ 2165784 (+) True LOC113546173
XR_003404394.2 other downstream 228269 7649198 ~ 7666033 (+) False naa15b
TU50445 other downstream 1044818 8465747 ~ 8466312 (+) True G42685
trnak-cuu other downstream 1048695 8469624 ~ 8469696 (+) False trnak-cuu
TU52056 other downstream 3131330 10552259 ~ 10558295 (+) True sprn
XR_004577889.1 other downstream 3173645 10594574 ~ 10608704 (+) False LOC113543929

Expression Profile