RNA id: XM_034303057.1


Basic Information

Item Value
RNA id XM_034303057.1
length 3370
RNA type mRNA
GC content 0.42
exon number 14
gene id zgc:110045
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 18128349 ~ 18158184 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCATAAATACGCTgatgaattttatataaaaacgcTGTCCCTccagaatgtttaattttagcGGCAAGAAAACTAGTTTGTTGTCAAAAGTGGAATGCTAGTTGCACCACCCACTGATAAAtgttactatggcaaccagTAGTAGGAACGCCTGTTGTAATCAGAGAATGTGAAGTGACGCGTGTCGTGGCTCAACCGATAGTTCCAAACACTGAATAGTTTCCCAAACACACTCGCTGCTGACAACAAAGGAGGGCAATTCTTCATTACCGGACCATACAGCCACtggacactcacacactcactcacattgtTGGAGAAACAAGGCAAACAAGAGGGGAAAAGCAACTGAGTGACACCAACCTTCTGCCTCAACCTCAATCAGCCCAGCAGAGCCCGTTGTCTGAAAGTGTGAAGTGTCCAGATCATCAAGaagtatgaatatgaatgagaaAGAGGTTGCTTTGTGGTCTGAGGGAGGGCTAAATGTCACTCTCACCATCCGCCTACTAATGCATGGAAAGGAAGTGGGCAGTATCATTGGGAAGAAAGGGGAAACTGTcaagaaaatgagagaagagagtgGAGCACGTATTAATATATCTGATGGCTCCAGCACAGAACGGATCGTCACCATCACTGGTGCCTCTGAGGTCATCTTCAAAGCTTTTGCCATGATTGCAGAGAAGTTTGAGGAGGATATACTGGCCTGCATGGTGAACAGCACAGTGTCAAGCAGACCTCCTGTCACGCTGCGCCTTGTGTTCCCTGCCAGTCAGTGTGGCTCACTTATCGGCAAAGGAGGCTCCAAAATCAAAGAGATCAGAGAGacCACAGGTGCACAGGTGCAGGTAGCTGGAGACTTACTACCAGAGTCTACTGAGAGAGCAGTGACCATCTCTGGCACCCCCAATGCCatcacacagtgtgtgagaCACATCTGTACCATCATGCTGgagTCACCGCCTAAAGGAGCAACAATTCCTTACCGGCCCAAGCCATCCTCTGGTGGCAATCCCACAGTTTTATCCCAACCACATACAGCTCCTaCTTTTGCTGTTCCAGCGCAGTACACCATTCCTCCCCAAGACTTGACCAAGCTTCACCAGTTGGCTATGCAGCATATCCCCTTTACCTCCCTTGGGCAGAGCAACCCTGCCTTCCCTGGTCTGGATATGTCAGTTTCACCAAGCTCTCATGAGCTGAGCATACCTAATGAGCTCATAGGCTGCATTATTGGCAGACAAGGCACTAAGATCAATGAAATTCGCCAGATGTCTGGAGCCCAAATCAAGATAGCCAGTGCCACAGATGGTTCAGCAGTACGTCATGTCACCATTACTGGCTCCCCAGCCAGCATCTGCCTGGCTCAATACCTCATCAGTGCCAGtttAGAGATGGCTAAACTCAGCATCCAGGctgcctcctcttcctccagcaCTACTGTTGATCTCGGCCTGAGTTTCTCCCAGTCTGCCTCTCCTGCCTCTGCCTCTGCGGCCATGCTGGCTGCTCCCTCGGCCATTAATGTCCACTCACCCCCGGCCATGCCCTCCATCCCTACTACCCACTATGCTCTTCCAGTCTCCAGCCTGCTTGGCATGAAAACTGTGCCTCTGCTGGCCGTGCACGCTGCTGCCTCGCCGGGCCTCACTCCCTACACCACAAAAATCCCTGCCTCAGCCACCATCAAAAAAGCAGAGCATCAGAGGTTCGCCCCCTACTGACCACCACTGACAATCTTTCATTTACATGttatgttttctggttttttttgaCAGCTTTGAAGATTTTGTCCtcttttgtacatttctgtACAATATTATGCAAATGAACAGGACACAAATGAAATGCATCTCATATAATGCTGCATTTCCTTTGGCATTtcatttagaaatgtttcagatAGTAATATCAAGCCATATATTTTTCTGACACTCCATTCCCCCCTTCAAAACCATAACTAATGTGATTATTGTTACAGCATATTGATTTTGAAACCTTGCTCAAACTTATTAAGGTAGTCAATTACATGCAATTTTAGTACATGCATATACGTACATgatctttaaattttttttttttccaaaagtaCAAATCCTTTGTTTTTACTTAGTCTCAAATAGTCACATTGAGTCTCTTTTACTGAATATATCACCTGTGCTAGGTGCTTAAAAGCaggaaattaaaattttaattaatttaggtcaaaaatacaaatattagtCCCATATAATATTCAACTATGCAAAATATTCATGGTTGTAGTGACATGAGGAAATGAGCTACATGTATGTAAATGACAGTGTATTATGgttatttgtgattttattgtgtattttcttGATGTTTCTATTGTTTCCAGTTAACTGTAACTATGTACAAGTTAAAAGTTTCACTAGGACTGTAATGGAGCAGAGGTGGGATGCGTCACTGGCAGAAAATGGGTTATATTTGTGTTATAAGTATTATGAACCATAGTAATTTGCTGTAGTCCTTTGGCCCTGATGGTGTACATCTTTCCTCGACTTTATGTAGAAGTAGCTGGCCTGAGGCCTCTTTAGTCATGCTGACATGCTGCAGCTTCTCATTTTTCCTTCTGGACTATTCCCAAGCCATATGCTGTTTTTGAGTTCTCAGTATTATTCATTAGTCCAAGGTTTGATTATATGAAAACTGACAAAGTGTAAAGTTTACTAAACTTCACTGGAAAAAAGAACTATGACTAGTCTATTTactgttttatgtattttcatATTCACTATTTGATGGTTATACATATGTGTTAGGCTATTTTTGATAACATTCTCCACTTCTTTCTCATAAATGTTGGACTTCACACTTTTCACTTAACACTTAAATGAAAAGTGTTAACAAAAATTACCAGTGGTGTATCTCAGGGGTTGTTCCTGGGCCCTATATTGTTCTCTTTGTACATGCTTCTCCTTGGGTTCATTTGTTTCATAAATTATTTCCTACCATTttaatgctgatgacacacagttgtatctCCCATTGAAACCTGTTGATAATGGCTCTCTGCAAAATCTCTTTGACTGTATTACAGATATTAAATGCTGGCTGTCTAAAAACTTTCTCTAGTTAAATAATGACGAAACAGAAATCATTATATTTGGTAATCCAGACTCCACAAGAACTGTAGTTGACCAACTGTGGCCTTCGTCAAGTATTATACAAAGCTAAAAAATCTTGGTGTTATTTTCGACTCTGAACTGAAATTTGACAAACAGGTAAACTCAGTTGTGAGAGGAAGCTTTTTTCAAAGGAGAACTATTGCCAAAGTAAATGTATGTTGTCATTTAATCATCTGGAGATTgttatttatgcttttatttcttctcaAATTGA

Function

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577851.1 lncRNA downstream 36736 18087504 ~ 18091613 (-) True LOC117596862
TU57290 lncRNA downstream 43544 18083657 ~ 18084805 (-) True G48419
TU57280 lncRNA downstream 81463 18037687 ~ 18046886 (-) True G48411
TU57216 lncRNA downstream 140718 17987422 ~ 17987631 (-) True G48368
TU57104 lncRNA downstream 309745 17817285 ~ 17818604 (-) True G48271
TU57364 lncRNA upstream 8836 18167020 ~ 18173182 (-) False G48476
TU57365 lncRNA upstream 11841 18170025 ~ 18173182 (-) True G48476
TU57866 lncRNA upstream 685569 18843753 ~ 18844635 (-) True G48938
TU57868 lncRNA upstream 695329 18853513 ~ 18853713 (-) True G48940
TU57878 lncRNA upstream 732379 18890563 ~ 18890812 (-) True G48947
XM_026934615.2 mRNA downstream 5631 18108022 ~ 18122718 (-) True vwc2
XM_026939061.2 mRNA downstream 46883 18063825 ~ 18081466 (-) False ikzf1
XM_026939053.2 mRNA downstream 46883 18063825 ~ 18081466 (-) False ikzf1
XM_026939048.2 mRNA downstream 46883 18063825 ~ 18081466 (-) False ikzf1
XM_034302887.1 mRNA downstream 46883 18063825 ~ 18081466 (-) True ikzf1
XM_026933173.2 mRNA upstream 222576 18380760 ~ 18613521 (-) False lrmda
XM_026941600.2 mRNA upstream 542732 18700916 ~ 18711275 (-) True vdac2
XM_026933547.2 mRNA upstream 558699 18716883 ~ 18786463 (-) True march8
XM_026933521.2 mRNA upstream 558699 18716883 ~ 18786462 (-) False march8
XM_026933513.2 mRNA upstream 558699 18716883 ~ 18786462 (-) False march8
TU56951 other downstream 466965 17657581 ~ 17661384 (-) False col13a1
XR_004577786.1 other downstream 553927 17562332 ~ 17574422 (-) False LOC113538666
XR_004577787.1 other downstream 553927 17562332 ~ 17574422 (-) False LOC113538666
TU56907 other downstream 652288 17471187 ~ 17476061 (-) True cisd1
XR_004577772.1 other downstream 1145620 16979131 ~ 16982729 (-) False morn4
TU57664 other upstream 172184 18330368 ~ 18613401 (-) True lrmda
TU58169 other upstream 1158303 19316487 ~ 19319733 (-) True G49195
XR_004577815.1 other upstream 1477654 19635838 ~ 19667661 (-) False atrn
TU58944 other upstream 2199750 20357934 ~ 20369097 (-) False gng2
TU58943 other upstream 2199804 20357988 ~ 20369097 (-) False gng2

Expression Profile