RNA id: XM_026941600.2


Basic Information

Item Value
RNA id XM_026941600.2
length 1826
RNA type mRNA
GC content 0.45
exon number 9
gene id vdac2
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 18700916 ~ 18711275 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAGGCATATCGGGTAGCGACAGATATCTGTGCTGTACAGTCTCCTTCAGTTCGCCCTCCAATCCTTTCGGTTCACCACGGCTGCTTAGCGCTGGGGTTAAGTTAATTAAACTTATTTAAGTTAATCCACAGCTTTATCTATTAGCAGACAATGGCAGTCCCCCCAACATATGCTGATCTTGGAAAATCTGCCAAGGACATCTTCAACAAGGGATATGGCTTTGGTCTGGTGAAACTTGATGTCAAGACGAAATCAGCCAGTGGAGTGGAGTTTAAGACTTCAGGTTCCTCCAACACTGACACCAGCAAAGTGGTGGGCAGTCTGGAAACTAAATACAAGAGGCCTGAGTATGGCTTGACCTTTACGGAGAAGTGGAACACTGACAACACTCTAGGAACAGAGATCACCATTGAAGACCAGATTGCAAAAGGGCTGAAGCTGACTTTTGATACAACCTTCTCACCAAACACAGGCAAGAAGAGTGGAAAAGTCAAGACAGCCTACAAACGGGAATATGTCAACTTGGGCTGTGATGTTGACTTCGACTTTGCTGGTCCAACTATCCATGCTGCTGCTGTAGTTGGTTATGAAGGATGGCTTGCTGGCTACCAAATGTCTTTTGACACAGCCAAGTCCAAGATGACCCAGAACAACTTTGCTGTAGGCTACAAGACCGGCGACTTCCAGCTGCACACCAATGTTAATGATGGCTCAGAGTTTGGTGGCTCCATCTATCAGAAAGTGAGTGATAAGATGGAGACAGCGGTGAACCTGGCCTGGACTGCAGGCAGTAACAGCACACGCTTTGGCATCGCTGCCAAGTACCAGCTGGACAAGGACGCCTCCATTAGTGCCAAAGTGAACAATACCAGCCTTGTTGGTGTTGGATACACACAAACTCTGAGACCAGGTGTGAAGCTGACCCTGTCTGCCCTGGTTGATGGAAAGAGCATCAATGCAGGTGGCCATAAGCTGGGTTTGGGGCTGGAGCTGGAGGCCTAAAATCCTGCACTCACTCATATCAGGGACAAGGGAATATCAGAGGAATCTGGCCTTAAATCTTAACCAGCAGGGGAATTCTGGATGGGAAGGGATTTGTTCAAAGACTCCAACAAATACGACCATTTTTAGTAGCCATTGCAGTGGTGTTCATTCTTTTCCCCGTGGTGTCTGTTTTTGGTTAGTACTACTGTTAAATACAGTCACTTTTGGTTCTGCCGCAAATCTGATTTCTTATCTCACACTCCTTTGTTAGTTTAATGCTCTCCTGTTGCAGCGGTGGGTGTCTAAGCCTGCATGTTGCGTTTCCTCTCCAGTAAGGGATTTGTGGTATTTGGGAGAatgtgatggattttttttcacctgtgTCTATCACCTGATATTCCTTAGTCAGCTGAACTTAATATGTGCAACCattaactacattttaaaaccCATATctgcttatatttaaataatgttatttttctttccataCACACAAGAAGAACCTTGCTCCATAATACCATTTCTCTCTGTCAGCCATCATGATTTGAAACCTAGTTGCACTTGAATCCTGCCCTTAAACTAAGCAGTTTTTGGGTGGCctaaatggatgaatgaaagcAGTTGAAACCTGTTTGGGAGAGCATGGCTGGCATGTTCGTTTTTTTCCTTGCAAAGATGACTAGGTGGAGCTTACGGTAATGCCAAAATGATGTGTTTTGAGTACCTAAAGCTTTCATTGTTGCCATTATGAACCTGATTTGCTGAGGTCATGCTTTCACAAAACCGTAGAGGTcctcatgtgtatgtgtaaactTTTCAATAAAGTCTTTGAACCCCA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0031101 fin regeneration biological_process
GO:0044070 regulation of anion transport biological_process
GO:0005741 mitochondrial outer membrane cellular_component
GO:0008308 voltage-gated anion channel activity molecular_function

KEGG:

id description
K15040 VDAC2; voltage-dependent anion channel protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57364 lncRNA downstream 527734 18167020 ~ 18173182 (-) False G48476
TU57365 lncRNA downstream 527734 18170025 ~ 18173182 (-) True G48476
XR_004577851.1 lncRNA downstream 609303 18087504 ~ 18091613 (-) True LOC117596862
TU57290 lncRNA downstream 616111 18083657 ~ 18084805 (-) True G48419
TU57280 lncRNA downstream 654030 18037687 ~ 18046886 (-) True G48411
TU57866 lncRNA upstream 132478 18843753 ~ 18844635 (-) True G48938
TU57868 lncRNA upstream 142238 18853513 ~ 18853713 (-) True G48940
TU57878 lncRNA upstream 179288 18890563 ~ 18890812 (-) True G48947
TU57886 lncRNA upstream 216907 18928182 ~ 18929502 (-) True G48954
TU57908 lncRNA upstream 245882 18957157 ~ 18957459 (-) True G48970
XM_026933173.2 mRNA downstream 87395 18380760 ~ 18613521 (-) False lrmda
XM_034303057.1 mRNA downstream 542732 18128349 ~ 18158184 (-) False zgc:110045
XM_026933547.2 mRNA upstream 5608 18716883 ~ 18786463 (-) True march8
XM_026933521.2 mRNA upstream 5608 18716883 ~ 18786462 (-) False march8
XM_026933513.2 mRNA upstream 5608 18716883 ~ 18786462 (-) False march8
XM_026933529.2 mRNA upstream 5608 18716883 ~ 18745253 (-) False march8
XM_026933538.2 mRNA upstream 5608 18716883 ~ 18745244 (-) False march8
TU57664 other downstream 87515 18330368 ~ 18613401 (-) True lrmda
TU56951 other downstream 1039532 17657581 ~ 17661384 (-) False col13a1
XR_004577786.1 other downstream 1126494 17562332 ~ 17574422 (-) False LOC113538666
XR_004577787.1 other downstream 1126494 17562332 ~ 17574422 (-) False LOC113538666
TU56907 other downstream 1224855 17471187 ~ 17476061 (-) True cisd1
TU58169 other upstream 605212 19316487 ~ 19319733 (-) True G49195
XR_004577815.1 other upstream 924563 19635838 ~ 19667661 (-) False atrn
TU58944 other upstream 1646659 20357934 ~ 20369097 (-) False gng2
TU58943 other upstream 1646713 20357988 ~ 20369097 (-) False gng2
TU58946 other upstream 1646713 20357988 ~ 20369429 (-) False gng2

Expression Profile