RNA id: XM_026941612.2


Basic Information

Item Value
RNA id XM_026941612.2
length 883
RNA type mRNA
GC content 0.43
exon number 5
gene id c1d
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 23672419 ~ 23679981 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtgtttgcttaCTTGTTCCTAATTCTCCAAccctttattttgaaatgtatcATGACGTAAGCGGAAATAGATGCGTGGTGCCTTTTTGTTTAGGGTCCCTATCTTTTTTCAGCTGCGATCCCTTGCGAGGTTATAGTCATGGCTGACGAAGGCTTTCTGGAGGATTACCCTACCGAAATTGCGGAATACCTGACTGGTTTCTTGTCTTCTGTGGGCTCGGTCCAATATGTGATCCAAACTCTCATGTCCGTGTCGAAGGGCGACCGCCTAAAGCTTGGCCCCCTTGAGCAAGCCAAACTGGACTTAATGTCAGCATACGCCGTCAATTCCCTATTCTGGAtGTACTTGGTAACACAAGGAGTGAATCCGAAAGATCATGGAATCAAACAGGAACTGGAGAGAGTCCGAACTTATATGAACAGGGTAAAGGAGATCACAGATAAGAAAAAAGCAGCTCGTCTGGACAAAGACACAGCATCTCGGTTTGTCAGGAACGCACTGTGGGTTGGAGAGGACACCAAAGCCAAAGACAGCATGTTGCAGCACAGCAAGCCAAACAAAGGAAACTGAGTTGAGGAGCAGCTCAAACTTCTGGgactgtactgtacacatgcacacaatatGCCTTCATCATTGATTTGCTTTCTCTCATCATTGTGCTGTTTCTTCTTTTAGGCCTCTGCTTGCCTGGCAGCAGATTGAGGTTTGGTACTGTTTGAATGTAATTTTGTTGACTGACATGTATTTATGATAAGGTTTCATTGGGAAATAGATATTTACGCATAGCTTAcataaagttgtaatatttacatgagAGAtatacagtcgggtccataagtatttggacagtgacagttttcgtatttttgcctctgtacacca

Function

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0005730 nucleolus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12592 C1D, LRP1; exosome complex protein LRP1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577532.1 lncRNA downstream 269 23668808 ~ 23672150 (-) True LOC113537953
TU61156 lncRNA downstream 2413 23668823 ~ 23670006 (-) False LOC113537953
TU61003 lncRNA downstream 163680 23508529 ~ 23508739 (-) True G51600
TU60987 lncRNA downstream 190065 23482123 ~ 23482354 (-) True G51584
TU60984 lncRNA downstream 198328 23472299 ~ 23474091 (-) True G51581
XR_004577814.1 lncRNA upstream 6748 23686729 ~ 23687499 (-) True LOC117596832
TU61160 lncRNA upstream 7633 23687614 ~ 23692863 (-) True LOC113544646
XR_004577813.1 lncRNA upstream 7668 23687649 ~ 23715940 (-) False LOC113544646
XR_004577812.1 lncRNA upstream 7668 23687649 ~ 23704127 (-) False LOC113544646
TU61208 lncRNA upstream 44897 23724878 ~ 23725088 (-) True G51781
XM_034303119.1 mRNA downstream 623295 23032198 ~ 23049124 (-) True phf10
XM_026937353.2 mRNA downstream 694776 22964720 ~ 22977643 (-) False fam120b
XM_026937352.2 mRNA downstream 694776 22964720 ~ 22977643 (-) True fam120b
XM_026937357.2 mRNA downstream 737558 22927645 ~ 22934861 (-) True ppm1g
XM_026937407.2 mRNA downstream 748679 22913819 ~ 22923740 (-) True apmap
XM_026942047.2 mRNA upstream 47171 23727152 ~ 23750761 (-) False kifc1
XM_026942038.2 mRNA upstream 47171 23727152 ~ 23750761 (-) True kifc1
XM_034303048.1 mRNA upstream 157958 23837939 ~ 23840860 (-) True mgme1
XM_026936298.2 mRNA upstream 157958 23837939 ~ 23840680 (-) False mgme1
XM_026936389.2 mRNA upstream 182738 23862719 ~ 23867530 (-) True mrpl14
TU60979 other downstream 218202 23447908 ~ 23454217 (-) True G51576
XR_003404067.2 other downstream 883636 22774355 ~ 22788783 (-) False znf318
XR_003404066.2 other downstream 883636 22774355 ~ 22788783 (-) False znf318
TU60345 other downstream 1571036 22035285 ~ 22101383 (-) False LOC113540944
TU60082 other downstream 1722230 21949855 ~ 21950189 (-) True G50837
XR_004577819.1 other upstream 337283 24017264 ~ 24040100 (-) False mlh1
XR_003404244.2 other upstream 773138 24453119 ~ 24651847 (-) False lyst
XR_004577838.1 other upstream 791722 24471703 ~ 24651847 (-) False lyst
XR_004577835.1 other upstream 1002265 24682246 ~ 24735887 (-) False herc4
XR_003404274.1 other upstream 2230037 25910018 ~ 25910119 (-) True LOC113542183

Expression Profile