RNA id: XM_026941717.2


Basic Information

Item Value
RNA id XM_026941717.2
length 1495
RNA type mRNA
GC content 0.51
exon number 9
gene id actr2b
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 23052228 ~ 23069644 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGACAGCCAGGGCAGGAAAGTGGTGGTTTGTGATAACGGAACTGGGTTTGTGAAGTGTGGCTATGCAGGTTCCAACTTTCCAGAGCACATCTTCCCTGCGCTGGTGGGCAGGCCTATCATTCGCTCCACAGCTAAAGTTGGCAACATTGAGATTAAGGACCTGATGGTGGGTGATGAGGCGAGTGAGCTACGCTCCATGCTGGAGGTGAACTACCCGATGGAGAATGGCATTGTCAGGAATTGGGATGACATGAAGCACCTGTGGGACTACACTTTTGGTCCAGAGAAACTAAACATTGACTCACGCAACTGCAAGATTCTCCTCACCGAGCCCCCCATGAATCCCACCAAAAACCGTGAGAAGATCATCGAGGTTATGTTTGAGACGTATCAGTTCTCAGGGGTTTATATTGCCATTCAGGCTGTTCTCACATTGTATGCTCAAGGTCTATTAACGGGAGTCGTGGTGGATTCAGGTGATGGTGTGACCCACATTTGCCCTGTATACGAAGGCTTCTCTCTTCCTCATTTAACTCGCAGGCTGGACATAGCAGGGAGAGACATCACTCGATATCTTATAAAGctgctgctgctgcgagGATACGCTTTCAACCACTCAGCAGATTTTGAGACCGTGCGCATGATGAAGGAGAAACTCTGTTATGTAGGATACAATATCGAGCAGGAGCAGAAGCTTGCTTTGGAGACTACTGTACTAGTGGAATCCTACACGcTCCCTGATGGCAGAGTGATAAAGGTCGGAGGGGAGAGGTTTGAGGCACCTGAGGCTCTTTTCCAGCCTCATCTGATTAACGTGGAGGGAGTGGGAGTGGCTGAGCTGCTCTTCAACACCATTCAGGCAGCAGACATCGACACCAGGGCTGAGTTCTACAAACACATTGTTCTCTCAGGCGGTTCTACCATGTATCCAGGCCTGCCCTCCCGACTGGAGAGGGAACTCAAGCAGCTCTATCTAGAGCGGGTGCTTAAAGGGGATGTGGACAAGCTCTCTAAATTCAAGATCCGGATTGAAGATCCTCCACGGCGCAAACACATGGTGTTCCTGGGTGGAGCTGTGCTGGCTGACATCATGAAGGACAAGGACAACTTCTGGCTGACGAGGGAGGAGTATCAGGAGAAGGGTGTGCGCGTGCTTGAGAAGCTCGGCGTCACAGTCAGATAAACTGTTAGCGTCTGCTAAACCCTCTGCGTCCTCTCCACTCTCCCACGTATAGGATATCCAGAGCATCTGTCCAGCTGTGTGTCGCTAGAGCTCTCACCTCCTGCATTCTGCTACTCGTGCCACTGAGTCACATGATCACTTTTGGGAAGGACAGACCGGGAGGTGTATTAGGGCTGCTGGGGAGGGAGGTGAGGAGTTTGGCATCCATATTTTTGGGCTCTCTGTTATTATCCTTATGCACCAGATCGTAAAGTTGTCACAAGCAGTCATTTCAACTTATGTCAGTGTTTGTCTCGTGCAAAACAAAGCC

Function

GO:

id name namespace
GO:0034314 Arp2/3 complex-mediated actin nucleation biological_process
GO:0005885 Arp2/3 protein complex cellular_component
GO:0005524 ATP binding molecular_function

KEGG:

id description
K17260 ACTR2, ARP2; actin-related protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60728 lncRNA upstream 93608 22958400 ~ 22958620 (+) True G51358
TU60716 lncRNA upstream 138691 22911144 ~ 22913537 (+) False LOC113540861
TU60717 lncRNA upstream 138691 22911144 ~ 22913537 (+) True LOC113540861
XR_004577900.1 lncRNA upstream 315561 22729332 ~ 22736667 (+) True LOC117596907
TU60802 lncRNA downstream 677 23070321 ~ 23070713 (+) True G51422
TU60805 lncRNA downstream 3312 23072956 ~ 23145137 (+) True G51425
TU60806 lncRNA downstream 5086 23074730 ~ 23076471 (+) True G51426
TU60889 lncRNA downstream 137471 23207115 ~ 23275341 (+) True G51501
TU60900 lncRNA downstream 208279 23277923 ~ 23361488 (+) True G51511
XM_026937324.2 mRNA upstream 65431 22981602 ~ 22986797 (+) True dld
XM_034302932.1 mRNA upstream 124678 22924521 ~ 22927550 (+) True si:zfos-1056e6.1
XM_034301913.1 mRNA upstream 138676 22911706 ~ 22913552 (+) False LOC113540861
XM_026937432.2 mRNA upstream 161359 22870890 ~ 22890869 (+) True LOC113540824
XM_026937440.2 mRNA upstream 164516 22871201 ~ 22887712 (+) False LOC113540824
XM_026941706.2 mRNA downstream 1664 23071308 ~ 23101134 (+) True spred2b
XM_026935614.2 mRNA downstream 150477 23220121 ~ 23276316 (+) True meis1b
XM_026935610.2 mRNA downstream 150481 23220125 ~ 23275640 (+) False meis1b
XM_026939527.2 mRNA downstream 358373 23428017 ~ 23450991 (+) True si:dkey-78p8.1
XM_034303047.1 mRNA downstream 735293 23804937 ~ 23834851 (+) True slc29a3
TU60615 other upstream 265723 22784328 ~ 22786505 (+) True G51271
TU60121 other upstream 1028417 22021407 ~ 22023811 (+) True wu:fj16a03
trnae-cuc_10 other upstream 2046709 21005450 ~ 21005519 (+) True trnae-cuc_10
TU59013 other upstream 2476749 20574973 ~ 20575479 (+) True G49862
XR_003403775.2 other upstream 3696130 19341350 ~ 19356098 (+) False sfxn5a
XR_003404579.1 other downstream 44541 23114185 ~ 23115039 (+) True LOC113545030
TU60962 other downstream 384784 23454428 ~ 23455549 (+) True G51562
TU61166 other downstream 627388 23697032 ~ 23697294 (+) True G51749
TU61214 other downstream 724036 23793680 ~ 23805495 (+) False slc29a3
TU61306 other downstream 985597 24055241 ~ 24057887 (+) True LOC113540163

Expression Profile