RNA id: XM_026941730.2


Basic Information

Item Value
RNA id XM_026941730.2
length 2154
RNA type mRNA
GC content 0.47
exon number 8
gene id eef1a1a
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 14346597 ~ 14351235 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCCCCCTAAAAAGCCAGTGAGCAGTGAGTAGTGTCGCGCGGAAGTGCGCAGTCGCACTGTGGTGCAATATAAAGCAGCTCTGAGCgcgtcagtgtgtcagtgtgtgagccTCAGCGCCGTGTCACTGCAGCACAGTATAACCAGCCATGGGAAAGGAGAAGCTCCACATCAACATTGTGGTCATTGGCCATGTTGACTCTGGCAAGTCCACTACGACTGGCCACCTCATCTACAAGTGTGGTGGCATCGACAAGAGAACCATCGAGAAGTTTGAGAAAGAGGCTGCCGAGATGGGTAAAGGATCCTTTAAGTATGCCTGGGTGTTGGATAAGCTGAAGGCAGAGCGGGAGCGTGGTATCACCATTGACATTTCCCTGTGGAAATTTGAGACCAGCAAGTACTATGTCACAATTATTGATGCGCCTGGGCATAGGGACTTCATCAAAAACATGATTACTGGCACCTCCCAGGCAGACTGTGCTGTTCTGATAGTGGCAGCTGGCGTTGGTGAGTTTGAAGCTGGTATCTCAAAGAACGGTCAAACCAGAGAGCATGCTCTCCTGGCCTATACGCTGGGTGTAAAACAGCTCATTGTAGGTGTTAATAAGATGGACTCCACTGAGCCCAACTACAGCCAGAAGCGCTATGAAGAAATTGTCAAGGAAGTCAGCACTTACATTAAGAAGATTGGCTACAACCCTGAAACCGTGGCATTTGTACCTATTTCTGGTTGGAACGGTGATAACATGTTGGAGGCCAGCCCCAATATGACTTGGTTTAAGGGCTGGAAGATCACTCGTAAGGATGGCAGTGTATCAGGAACTACTCTTCTGGAGGCTTTGGATGCCATCCAGCCCCCAACTCGTCCCACTGATAAACCACTCCGTCTGCCACTGCAGGATGTCTACAAGATTGGAGGTATTGGAACTGTCCCTGTTGGTCGTGTGGAGACTGGCATTCTGAAGCCAGGGATGGTGGTGACCTTTGCACCTGTTAATGTAACTACTGAGGTAAAGTCTGTGGAGATGCACCACGAGGCTCTGTCTGAAGCCCTGCCAGGGGACAACGTGGGCTTCAATGTCAAAAATGTCTCAGTGAAGGATATCCGCCGTGGGAATGTTGCTGGGGACAGCAAGAATGATCCGCCCCAGGAGGCAGCCAGCTTCACTGCTCAAGTGATCATCCTGAACCACCCAGGGCAGATCAGTGCAGGTTATGCTCCAGTGCTTGACTGCCACACTGCACATATCGCCTGCAAGTTTGCTGAGCTCAAGGAGAAGATTGACCGCCGCTCTGGAAAGAAACTTGAGGATAATCCCAAGAACCTCAAGTCTGGGGATGCTGCCATTGTGGACATGATCCCTGGGAAACCCATGTGTGTGGAGAGCTTCTCAGAGTATCCACCTCTTGGACGCTTTGCTGTTCGTGACATGCGTCAGACTGTGGCAGTTGGAGTGATCAAGGGAGTCGAGAAGAAGGCTCCGACTGGTGGAAAGGTCACCAAGTCTGCTCAGAAAGCCCAGAAGGCCAAATGAATTTTGTGTTTGACTGCCAACTCCAGTGTCGCATACAACAGAACAGAGGTCACCCAACTATATCCAATTGGCTGCTTAAACTCCATAGTCATAGACTGGTTAATCGTTCCAATGCATCGTAAAAGtatcagaaggaaaaaaaattgacttaaaTCTGTACCATGAgaattatttgtaatattagcTTGTTACTATTTGGAGTGTCTATTTATTTGGGTTAAGACCGTTCACACTATTATGCGAAATTACTAATCTTGAGAGGAAATGTTATCATGACCTCTCCTACTCTGGAGTGCAGTTTTATTCTGGTTCTTATACTGTTGTCTTGCTTTTAGTGTTTGTTTGCACATTAGTGTGTTTTTAGGTTTTGCTGCTCTTAGTAACTTAAATTATGTTACTTCTTAGTCTTTCTGACTATTTAAGCTTTAAagaaattggaaaataatcaacctttcCAAATCAGACCATAGTGGGCACTTTTCCAAGCACTTAAAGCACTTGGCCTAAAGCTGGTTTTGCACAGGCacttattattaactttaattGGTTTTAGCTTCTGCACCTTACTGTTCAGACTATTCAACTCAATCAGGCCATATTAAAGGTTCTGCAATCATA

Function

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K03231 EEF1A; elongation factor 1-alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54602 lncRNA upstream 58310 14286650 ~ 14288287 (+) True G46217
TU54606 lncRNA upstream 58379 14286650 ~ 14288218 (+) False G46217
TU54604 lncRNA upstream 58379 14287418 ~ 14288218 (+) False G46217
TU54553 lncRNA upstream 162951 14183437 ~ 14183646 (+) True G46176
TU54552 lncRNA upstream 163404 14182991 ~ 14183193 (+) True G46175
TU54753 lncRNA downstream 36794 14388029 ~ 14388311 (+) True G46337
XR_004577856.1 lncRNA downstream 266373 14617608 ~ 14626226 (+) False LOC113541837
XR_003404224.2 lncRNA downstream 266381 14617616 ~ 14626490 (+) True LOC113541837
TU54851 lncRNA downstream 266419 14617654 ~ 14626372 (+) False LOC113541837
TU54849 lncRNA downstream 273238 14624473 ~ 14626473 (+) False LOC113541837
XM_026944267.2 mRNA upstream 5309 14331492 ~ 14341288 (+) True slc17a5
XM_026937917.2 mRNA upstream 18298 14296334 ~ 14328299 (+) True rin2
XM_026941983.2 mRNA upstream 53734 14289382 ~ 14292863 (+) True si:dkey-187a12.4
XM_034303068.1 mRNA upstream 60055 14213369 ~ 14286542 (+) False slc24a3
XM_026944022.2 mRNA upstream 60055 14213402 ~ 14286542 (+) True slc24a3
XM_026945100.2 mRNA downstream 10132 14361367 ~ 14368100 (+) True cgas
XM_026940158.1 mRNA downstream 243967 14595202 ~ 14611970 (+) True asrgl1
XM_026940176.2 mRNA downstream 243999 14595234 ~ 14611970 (+) False asrgl1
XM_026940185.2 mRNA downstream 244842 14596077 ~ 14611970 (+) False asrgl1
XM_026940168.2 mRNA downstream 244852 14596087 ~ 14611970 (+) False asrgl1
XR_003404567.2 other upstream 63429 14213402 ~ 14283168 (+) False slc24a3
TU54033 other upstream 845551 13498092 ~ 13501046 (+) False pcbd1
TU53738 other upstream 1313349 13032279 ~ 13033248 (+) False si:ch211-223p8.8
XR_003404144.2 other upstream 1346635 12982406 ~ 12999962 (+) False col17a1b
XR_004577803.1 other upstream 1409795 12929559 ~ 12936802 (+) False spef1
XR_004577898.1 other downstream 10132 14361367 ~ 14367446 (+) False cgas
TU55629 other downstream 1442193 15793428 ~ 15797204 (+) False eif4ebp2
XR_003404341.2 other downstream 1719479 16070714 ~ 16073067 (+) True cxcl18a.1
TU55689 other downstream 1719524 16070759 ~ 16071920 (+) False cxcl18a.1
TU55884 other downstream 1883300 16234535 ~ 16236648 (+) False lrrc18a

Expression Profile