RNA id: XM_026941819.2


Basic Information

Item Value
RNA id XM_026941819.2
length 5826
RNA type mRNA
GC content 0.44
exon number 3
gene id bcl11aa
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 13588316 ~ 13633478 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCAAGTTCGCAGGGACGTCACGTCCGCACTTGAACTTGCAGCTCAGGGGGgcttttgccatttttttcatctctctctctctctctctttctccctctctctctctctcttttcaaaaAAAGCCATGACGGCTATCCCACAATCCATCTTCCCCGCGCCATCTTTGtattatttctaatttattttggaTGTCAAAGGCATTGATGAAGATATTTTCTCTGGAGTCTCCCCGCTAACCCGGCTCTCCCGATGTGAACCGAGCTGAAAGCCGCCGCCAACCACCATGTCTCGCCGCAAGCAAGGCAAACCCCAGCACTTAAGCAAACGGGATTTTTCGCCCGAGCCCCTGTCATCCGTGGTCTCGGAGGAAAGGCAGGAACAGCACGGGCTGGTACAGGTCTCTCCGGAAGGGGACCAGGACCTGCTTACCTGCGGCCAGTGTCAGATGAACTTCCCTTTGGGGGATATCCTCATTTTTATTGAGCACAAAAGGAAGCAATGCAATGGCACCATGTGCGTGGACAAGACAGTGGATAAGCCCCCTTCTCCCTCGCATGGCGAGCTGAGGAGAGCGTCCAATCCCGTGGAGGTGGGCGTCCAGGTCACGCCGGAGGACGACGATTGCTTGTCAACGTCTTCTCGAGGAATCTGTCCCAAACAGGAACACATAACAGGTAAAGATGAGCCCAGCAGCTACACCTGTACAACCTGTAAGCAACCATTCAACAGCGCCTGGTTCCTGCTGCAGCATGCCCAGAACACTCATGGCTTCCGCATCTACCTGGAGAGTGAACGTGGGAGTCCCCTCACACCTCGAGTTGGTGCCCCTTCTGGGATGGGTGCCGATCATGCCTCCCAACCTCCCTTACATGGCATTCACCTGCCTGAAGGCAGCCCCTTCAATTTGCTCCGGATTCCCAACTCTGGACGCGATGGTCCCCCTCTGCGGGAGGGACGTTTTCCGCCTACCCCTCCACTCTTTAGCCCACCACCCCGCCATCACCTGGACCCCCATCGCATGGAGCACCTGAGCCCAGAGGAGTTGGCCCTAGCCACCCACCACCCGAGTGCCTTTGACAGGGTGCTGCGCCTCAACCCCATGCCCCTGGATCCCCCTGCTATGGACTTTTCTCGCAGGCTCAGAGAGCTGGCTGGCAACACCTCAGGGTCAACTCCCCCCCTCTCACCCAACCGGCCCAGCCCCATGCAAAGGCTTCTGCAACCATTCCAATCAGGAGCCAAGCCACCGTTCCTGTCCACCCCTCCCCTTCCATCAATGCAGTCCCCCTCTGGCTCCCAATCTACTCCAACACCACTGCCCCAGCAGCCCAACACACCCATGAAGTCCAAGGCCTGCGAATTCTGTGGGAAAACCTTCAAGTTCCAGAGTAATCTTATTGTGCATAGGCGCAGCCATACAGGCGAGAAACCCTATAAGTGCCACCTCTGTGACCATGCCTGCACCCAGGCAAGCAAACTGAAACGGCACATGaagacacacatgcagaaaaCCTCTCCCACAACAGTCAAATCTGATGATGGCCTCTCCACAGCAAGTTCCCCTGAACCTGGGACCAGTGAACTAGTGGGGAGTGCCAGTAATGCCCTCAAGTCTGTGGTAGCCAAGttcaaaagtgaaaatgacCGTCTGATTCCAGAgaatggagaagaagaagaggaagaggaagaagaagaagaggaggaggaagaagaggaagaggaggaggaagaaggagaggaagaagaagagctggAACGAGAAGGGACTCGTAACAACTTCCATTTTGGCTTGAACCTGGAAGCCGCAAGACACCATGAAAACAACGGTGGGCGCCTAGGTGTGGCTGAGGATGGAATCCCACGCTCCTTACCTGAGGTGATGCAGGGCATGGGCCTGGCAGCCAGCATGCAGCACTACAGTGAGGCCTTCCACCAACATAAGCGAGGTGTGCTCAACTCTGACAGCAATGCACACAGAGACATCTGTGATGAGGACTCAGCAATGGAGTCAGACCGTGTGCAAGAAGGCTCAACTATCAATGGCCGGGGCTCATCTCCCAATGAGTCGGCCTCTGTAGGCCTGTCCAAGAAGCTTCTTTTGGGCAGCCCCAGTTCCCTCAGCCCTCTGTCCAAACGCATCAAGCTGGAGAAGGACTTTGACCTTCCCACGCCAACCATCCCCAACACTGAGAATGTTTATTCCCAGTGGCTGGCTGGCTATGCTGCCTCACGGCAGCTCAAAGACCCCTTTTTGAATTTTGGGGATTCCAGACAATCGCCTTTTGCCTCATCTTCAGAGCACTCCTCAGAAAATGGCAGCCTGCGCTTCTCTACACCACCGGGAGAACTTGACGGTGGTGTCTCTGGCCGCAGTGGTACAGGTAGTGGGGGAAGCACGCCACACCTCGGTCCTGGCCGGCCTAGCTCAAAAGATGGCAGACGTAGTGATACCTGTGAATTCTGTGGCAAAGTGTTTAAAAACTGCAGCAACCTGACAGTGCATCGGCGTAGTCACACGGGCGAGCGACCCTACAAGTGTGAACTCTGCAACTATGCCTGTGCCCAAAGCAGCAAGCTCACACGGCACATGAAAACACATGGGCAGGTGGGAAAGGACGTTTACAAATGTGAAATTTGTCAGATGCCTTTCAGTGTGTACAGCACCCTGgagaaacacatgaaaaaatgGCACAGTGACCGCGCCTTGAACAACGAAATTAAAACTGAATAGTGATGGTGAGTGGAGGCACACTTGCAGCAAACCTCCTCAAATCCCACCCTTGTAGATTTTCCCTGTTTGGCTAGTCCAGTGGAAGCTAAGACAACGTGCTTGGCACCACCAGCACACCCTTCTTCATTTACCGTTGAATGCATGTTCTGTATCGGGGCAATACTATTGCATTGACGCAAACTTCGAGCCTTTCTCTTGTGCAATAATTtacatgttgtgtattttttctttttctttcccttttttgaTAATTAGACAGCATGCATGATATGTTTtggctattttaaaaaaaagaattgtccCTGGCTGGTTAGTTGTTGAGTAAATGTGTTGCTGTtttcttgttctgttttttattcaaaaaatgagaagagaaaaaaagcaaccATGCTGCATACATTCTGTAAAACATATCATGTACAGTTTTGTGTTGTAACATGGAGGACAACCGTTTATTGCTTAACCCTCTTCGGAGGAGCTGGGAATCGCACTTAAACTAATCTTTCAAAAAGATATTCTGTCCACATAgggttaaaatatttaattggcCCCTATTATGGAACATAAAGTATTGACAGCCTttgaatttctttaaaaaaaaaataaggagtCATCAAAATTTGAATTTGTACTATCATTtggtaaaacaaacaaaaaagagtgCCTTGGATCTTGAAACTGCATTGGTTAATCTTCTTATCTGCTCTAAGCTTGGAATCTCAGCCAGATATTGGAAATGGATTTATTTGATTCACTTGAGGTTCTTGCATCAAGTACCTGACTTTGACACTGTCTACATGGAAATGATGATAATCAAAAAGCTAAAAGCTAATTTGTAGTTAATCATCATTAGCTACCTATAACACATGCACTCTTCaattatagtatttttattgttcatgGTACATCCAGTATTGTGTTGGATTGAACCATGTTTACTCTCCAGTTAAGGGTACTGTCCTCGGTGGTACAGGTTTTTAATCCACAGTCATAAGCTCTCTCATAGTTTGTGAAGGTTCTGTTCTCTGTAGCAAGCAGTCTAAAGCGTGTATCGGGTTGTACGAACATCCACTGCATAGGTACACTTTGCAGCCTATAATATGTCACGCAgtgtttttgaaaataattttgaagAATATTTTCATCTGTCAGTGATGATTAACTATGAATTGCTTACAGATATGAATCATGGTCCCCAAACAAATTTCTCTAGCACTGACTGGAGTACTTATGCCTGTGTTCCTTAAATTATAAAGAGGGGAGAGGGAATAATCAGGAAGCATGACTTTTGCGTGAAATATATGTTTGGGAGGACATCTACCCACTTTTGACAACCATGTTTTCAGTCTTTAGATAGCACTTGACACTCGGCCCCTTCAGTCTGTGTCTGACGCTCTGATTGGTGGTGTAGTGGTTGAGTATAAATTACGACTGCTTGCATAGACAGTAAAGTGCACTGTTAAAGTTTCCCAGTTTACAGGTATTAACATGAGGGAAAACTtcttttaagtttaaaaaatgtgtcattgttGAACATAATGAAGCCAACTCTTTACTCAGTCCAGCACCCACTTATTGAAAGTCCAACTCCAATATAATGTATGAGCTTCGGGGCATAGACCTCCTGTCAAACAATGGACTATGGAAACTTGCTGCTTTCACTgcaagaagatttttttttgtacaaaaacatttttttaaaaatatgaatataaagcatttttaaataattagcaAATCATTTTTTAGGGAACCTGTATTTAAGTTTGATGttgtttctctttcctctttgtCTTGGTGGTGTTCAAGAATTGATCACAATATATatagaatgggaaaaaaaatctgtgattttctgtttatttcctttttttctccaccgTGGCTCTTCATAGCTCTTCAGGTCAAACATAACTTGCATTGGGGAAAGGTTtaagattatatataaatatataatagagAACTTAAATATAGGAAAATGCACACTCATGGTCAATTCCTATgctaaaacacatttatgaCCTACTTTCTTCTGTATTTCTAGAATGGTATTTGAATTAAATGTTCACCTAGTGTAGGCACTATAGTATTTATATTGAGGCTTGTATTTTTAACTGTTGCTTGTTCTCTCAAAAGGTATTATTGTACCTTTTTTGGTAGtggaaaaaacaacaagctGCCAcggtatatttttttaatttggcagGATAATATAGTACGaattatttgtatgtttaaaaattacattaaaaaatcaataaaaaaactaaagtaTGTGGCATTGTATAAAGGAGGCCATCTGATGGTTTCCCTGAGGAGTCTTTTGAGAATGTCCACACTAGCTAAAACAGGTGGTTGTACATATCTTTTTTCGGTTCTTTTTTTAGACTCTCCTCTTCTGCTGCCATTCTGTATGCAGTAATGCAAGCTGATGTTGGGTTCTTCTGTAGTGTGCTTCTCTGTCTTCTCACCTGACTACATTCCAGTATCTTAAAGAGAACAAATGTCATATGCAGTAAATTATCAGTACAGAAatgaacatcatttaaataaatgaattaaaaataatcaatgttttgCAGGTTTTGTTTCATTGCCAAATACTATGGTGCTTTATATTTAGATTGGGATGACTTTCGTATGCaaagcatatttaaaaatgaaatggaacTAATGGAAAAGCCCGCTTGAGTTCATACTTTTTTGTAAATGGCAATGCGAAATATTTTGTTATCAGCCTTTTCTATTCCTGTTCTGAAAGCTGTTGTTgtaacttgaacttgaactttaTCTTTTACAATGGGAGtcactatttattattacttaaatgCTCTGTTCAAAACAGAGACATGGAATggatcttttttgttttctttttttttttttttttttttaatttttgttattgttttcctttaaaaatgaccaaaggtcatttacaacttttgcttttttgttgtatttgtttctgGTCTATGTTGAGTTTTATTGGAGAAACCACTGTCTGTGTTTTCTGGCAGTTGTCTGCATTATCCTGTTCACACACCCATTTTGTCCCTTTATTGAAaccaattaataaaaaaaaatcaaagta

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K22045 BCL11A; B-cell lymphoma/leukemia 11A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53962 lncRNA upstream 212317 13375799 ~ 13375999 (+) True G45640
TU53890 lncRNA upstream 275095 13312994 ~ 13313221 (+) True G45594
TU53888 lncRNA upstream 276236 13311677 ~ 13312080 (+) True G45592
TU53786 lncRNA upstream 492435 13095671 ~ 13095881 (+) True G45508
TU53744 lncRNA upstream 535787 13052240 ~ 13052529 (+) True G45473
XR_003404657.2 lncRNA downstream 10642 13644120 ~ 13645338 (+) True LOC113545747
XR_004577873.1 lncRNA downstream 255801 13889279 ~ 13889849 (+) True LOC117596881
TU54243 lncRNA downstream 260664 13894142 ~ 13896535 (+) True G45875
TU54552 lncRNA downstream 549513 14182991 ~ 14183193 (+) True G46175
TU54553 lncRNA downstream 549959 14183437 ~ 14183646 (+) True G46176
XM_026935703.2 mRNA upstream 87266 13498048 ~ 13501050 (+) True pcbd1
XM_026939104.2 mRNA upstream 158056 13419948 ~ 13430260 (+) True sec23ip
XM_026937959.2 mRNA upstream 183641 13385486 ~ 13404675 (+) True inpp5f
XM_026932061.2 mRNA upstream 204973 13376724 ~ 13383343 (+) True bag3
XM_026938675.2 mRNA upstream 222249 13359076 ~ 13366067 (+) True pkd2l1
XM_026939331.2 mRNA downstream 402160 14035638 ~ 14056463 (+) True fancl
XM_026943791.2 mRNA downstream 560356 14193834 ~ 14197074 (+) True soul2
XM_034303068.1 mRNA downstream 579891 14213369 ~ 14286542 (+) False slc24a3
XM_026944022.2 mRNA downstream 579924 14213402 ~ 14286542 (+) True slc24a3
XM_026941983.2 mRNA downstream 655904 14289382 ~ 14292863 (+) True si:dkey-187a12.4
TU54033 other upstream 87270 13498092 ~ 13501046 (+) False pcbd1
TU53738 other upstream 555068 13032279 ~ 13033248 (+) False si:ch211-223p8.8
XR_003404144.2 other upstream 588354 12982406 ~ 12999962 (+) False col17a1b
XR_004577802.1 other upstream 651514 12929559 ~ 12936802 (+) False spef1
XR_004577803.1 other upstream 651514 12929559 ~ 12936802 (+) False spef1
XR_003404567.2 other downstream 579924 14213402 ~ 14283168 (+) False slc24a3
XR_004577898.1 other downstream 727889 14361367 ~ 14367446 (+) False cgas
TU55629 other downstream 2159950 15793428 ~ 15797204 (+) False eif4ebp2
XR_003404341.2 other downstream 2437236 16070714 ~ 16073067 (+) True cxcl18a.1
TU55689 other downstream 2437281 16070759 ~ 16071920 (+) False cxcl18a.1

Expression Profile