RNA id: XM_026941926.2


Basic Information

Item Value
RNA id XM_026941926.2
length 3944
RNA type mRNA
GC content 0.45
exon number 11
gene id cpz
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 7757610 ~ 7771338 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGCTGTGCAGGGATGAGGACGCGCCCCTAAAACCAAGGGccttgagagaaagagagtctccacacagacagccacATCACTGCGGCTCCAGCATGCTGCGCGCCACCGTGTTCCTCTGCGTCCTCGCCGCGTGTTCGTGCGCGCCGCCGCGCTCCTGCGAACCCGGAGATCAAGCTTTAGGAAGATGCAAGGAATCAGTAAAAGAGAAATTGCAGTGCACAGAAATGGTGCTGAGCTACTGCCAGGATGTGCCCTATAGGCAGGCTGTCTTCCCCAACCTCATCGGGCAGCAGTCGCGACAGGAGGCCGAGCAGAGCACTGAGTACCTGCTGCTTAATGTGCTGCACGGCCTGCTGGGGGGCGAGTGCTTGCCCGAGCTACGTCTACTCGGATGCTCTGTGCTGGCTCCACGATGTCACAAAAATGCCAGAATCAAGCCATGCCGCAGCTCATGTGAAGCAGTGAAGAAGAACTGCGTGCACGCCTTTGAGGCTATCCGCATGGCCTGGCCCTACTTCCTGGACTGTGACCGTTTCTTTGCAGCTGAGGAAGAGGGCTGCCACGACCCGCTGTCTGAGCTCAGAGCCAGGCAAGACGTCGCCTTCTCCAGCATCTCTGATGGGGGTCAGGCTACTGTTCTTCAGTTCACGTACCACACTAATGCTCAAATGTTCAGCATCTTGAAGAAAACGGCAGCCAAATGTCCTCAGATCTCCCGAACTTACAGCATTGGCCGTAGCGTGGAAGGCAAGGACCTGCTGGTCATTGAGTTCTCCAGTAATCCTGGACAACACGAGCTACTGGAGCCAGAGATTAAGTTGATCGGGAACATGCATGGGAATGAGGTTTTGGGCCGGCAGCTGCTCATCTACCTGGCTCAGTACCTGTGTTCCGAGTACCTGCTGGGCAACGAGCGCATCCAGAGCCTCATCAACAACACACGCATCCACCTTCTGCCCTCCATGAACCCAGACGGCTATGAGATCGCCGCCTCTGAGGGTCCCTTGTATAATGGTTGGGTCAGTGGCAGAACCAATGCTCAGAACATCGACCTGAACCGCAACTTCCCCGACCTGACCTCCATTTACTACAACCGACGGCGCTTCCTCCGATTCCGCACCGACCACCTCCCTATCCCCGACTCCTACTGGTTGAATAAGGTAGCTCCAGAAACCTACGCTGTGATGAAATGGATCAGGTCCATTCCATTTGTTATCTCTGCCAGTCTACACGGGGGAGAGCTCGTCATCTCGTATCCCTTTGACTTCTCCAGACACCCCCATGAGGAGAAAATGTTCTCTCCCACACCTGATGAGCAGaTATTTAAGCAATTGGCCAGGACCTATGCAGATGCTCATGCGACAATGGCCAGCAATGAGACACAAAGATGTGGAGGCTCATTTGCCGGCAGAGGAGGCATCATCAATGGCGCTCAGTGGTACAGCTTTGCTGGAGgCATGTCGGACTTTAACTACCTGCACAGTAATTGTTTGGAGCTGACGGTGGAGCTCGGCTGTGATAAGTTTCCTGCAGAGGAAGAGCTTTACCCAGAGTGGCGCAGGAACAAGGAAGCTCTGCTCAGTTTCATGGAGTCTGTCCACAGAGGAATAAAAGGTGTTGTGAAAGACAAAGATGGGAATGGAATTAAAGGTGCCATCGTATCTGTTAGAGGGATAAGGCATGACATCACCACAGCTGAAGATGGTGACTATTGGAGACTGCTGATTCCGGGTGTCCACATTGTAACTGCCACAGCTCCTGGCTACTCTAAAGTGGTGAAACGCATCAAGCTGCCTCACACCATGCAGAAGACAGGCCGTGTGGACTTTGTGCTAAACAGGGAGCCAGTAGAACCTGACCACGAATACTTATCCATCCCTGAGCTGGATAATTATGAGCGCTTCGACCCTTTTAACGCATTCGAGCAGCACAATGAGCCGGATCGTGGAGAGAatggagaggagaggagtgagaAGCCTTGGTGGTGGGCATACTTTAGTCAGCTGGGGACATCCCCTCCCACCTGGCTTCTCAGGAACTATTAGCACCCTCACATTGCCCCTTATTTCCATAACTGCCTCCTGTATGCAAATTAATGCACCTTAGGTTTCAATTATTGTCTTGGAAGTTATAGTCTTCATCCCATTCTTAAGACAAAGTTGGTCTATAATGTATTGTTTATAAAAATCTAACACTTATGTTAGGTGTCTAGGACTTGTTTTGGGACTGTACCTCATAACCTGATCTTGTGTATAAAGCAGAGATTACCAAACCCATATGAAAATTCTAATAACAGCTTAGTTCAATAACAGATGGCAGCTAGACCATTGCTTGgctagaataaaatatatatttgttttgtcaTGCAGGCTTTTTATGTGCAGGCACATTATGCCAAAACCTATTTAATGTTAATGGAACCCTGAATTTTCATTCGAATCAAACCAATGTATCATCTGTTTTCCATCAAAACACGTAACCTACAATTGCAAATGGACTGGAATAATTAAGATAGGGTATGAAAATCTGTTTCCTCTCATTCAGTGTAGAACTagatacaatacatttttcatttgaagAGCTAACAATTCCAATTTTTAACCAAAAGTCATGAAGCACTAAACACATTAGGTATAACCTTTACAATTGTACTCAACACTGGGTCTAAATTCTGTAAACCCAGGTCTACTTTTGGTCTGATCTCTGTGACAGAGCCCTATTTTGGATATAATCTCTGGACCAGAGCTCTACATTGGGGTTCAAATATGTAATCAGTTTGGGTCTACTCTGTGTCTGATCTGTAAATGAGTTGTAAATTAGATATAATACACTAATACATTGagtctaataaaataataataatataaatgcacATGTACTGTTATGATCTTGCTAGCTCAGTTCTAAGACTtgttaaactgtaaaattttaTTCTGAACCCTACAACCCAGGATTTCTCTCCTTTAGGTAGTTTGActaaccaaagaacccttgaagaaacCTTGTTTCTTAGACTGCAGCAAACAATATTGTAGTAAACATGTGACACGGTGTGTGACTTTTCAATGTACAAAATGAAGGCTCTCAGTGTCATGTATAGCATTTCActtcaaataaaatatgtaacttTAGCACTATATGTAGTTCGTGCACCACATCTGTTGCTGAGATCTGTATAGAGTCTAATCTGTATCTGAGCCTTTATTGGGTATAATCTATATCTGAGCTCTCAGCTGGGTCTAAACTAATCTGTATCTGAGCTCTGTTGGGTCTAATTTTCTTTGGGCTCTACATTGGGTCTAATTTGTACTTCTGTACCTGAGATCTACATTGGGTCTGATCTGTACCTGAGCACTGTATTGGATCTAATCAGTTTCTGAGCTCTACTTTGGGTCTAATCTTTACTTGACCTCTATGTTGGGTCTAATAAGTCTTTGGGCTCAACATTGGATCTAATCTGTACCTAAGGTCTATGTTGGGTCAAATCTCCATAACTGAAGTCTATGCTGGGTCCtaaatctgtaaaatctgtCCAGTGGATCTAATCACAGTCATTGGGGATTATGTTTGGTCTAATCTCTCAAGATGAGGTCTACTTTAGATCTAATTACAAAGGTTAACAAGCTTTTACACTGGATCTAATCTCTGTATCTGAGGTATAAATTTGGTCTAATGTCAGTCATTTAAGATTGTTTTGTGTCTAACTTTGGTAGCTGAGGTCTGTATTGTGTCTGATTACAGTAACTGAGGTTGGGTCTTTTGGGTCTAGTCTCTGAGACTtatgagaaaatgtaaatgtactgcCATGAGAATTATCTTGCTAGTCCAATTGTTACAACTTCTATGCCCTGCATTGTGTATATGCAAAActatatttcttttgttatgtCCATTGTAGTTGTTTTAGACATTtgcacagtgtttattaaaatgttgcTGTATA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004181 metallocarboxypeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50032 lncRNA upstream 23955 7733442 ~ 7733655 (+) True G42307
TU50029 lncRNA upstream 35759 7721649 ~ 7721851 (+) True G42304
TU50015 lncRNA upstream 112688 7640935 ~ 7644922 (+) True G42295
TU50006 lncRNA upstream 127505 7624869 ~ 7630105 (+) False scoca
XR_004577840.1 lncRNA upstream 282570 7473370 ~ 7475040 (+) True LOC117596850
TU50188 lncRNA downstream 95337 7866675 ~ 7866918 (+) True G42442
TU50193 lncRNA downstream 138086 7909424 ~ 7909698 (+) True G42447
TU50268 lncRNA downstream 404147 8175485 ~ 8176073 (+) True G42522
TU50277 lncRNA downstream 418692 8190030 ~ 8190247 (+) True G42531
TU50244 lncRNA downstream 425534 8196872 ~ 8197242 (+) True G42498
XM_026943765.2 mRNA upstream 2451 7749636 ~ 7755159 (+) True gpr78a
XM_034301226.1 mRNA upstream 21701 7716040 ~ 7735909 (+) True LOC117596357
XM_034302952.1 mRNA upstream 45064 7704449 ~ 7712546 (+) False LOC113543264
XM_034302950.1 mRNA upstream 49925 7704449 ~ 7707685 (+) True LOC113543264
XM_034302951.1 mRNA upstream 49925 7704449 ~ 7707685 (+) False LOC113543264
XM_026945018.2 mRNA downstream 298483 8069821 ~ 8080290 (+) True lrpap1
XM_026932353.2 mRNA downstream 670447 8441785 ~ 8445916 (+) True paip2b
XM_026934625.2 mRNA downstream 677319 8448657 ~ 8452951 (+) True dok1a
XM_026934984.2 mRNA downstream 685390 8456728 ~ 8461540 (+) False si:ch211-89o9.6
XM_026934975.2 mRNA downstream 685393 8456731 ~ 8464439 (+) True si:ch211-89o9.6
XR_003404394.2 other upstream 91577 7649198 ~ 7666033 (+) False naa15b
TU49753 other upstream 536587 7203950 ~ 7221023 (+) True G42075
XR_003404319.2 other upstream 2400913 5263582 ~ 5356697 (+) False znf827
TU48562 other upstream 2415860 5318534 ~ 5341750 (+) True G41047
TU47789 other upstream 3922999 3831949 ~ 3834611 (+) False LOC113545357
TU50445 other downstream 694409 8465747 ~ 8466312 (+) True G42685
trnak-cuu other downstream 698286 8469624 ~ 8469696 (+) False trnak-cuu
TU52056 other downstream 2780921 10552259 ~ 10558295 (+) True sprn
XR_004577889.1 other downstream 2823236 10594574 ~ 10608704 (+) False LOC113543929
XR_004577793.1 other downstream 3328255 11099593 ~ 11171114 (+) False dntt

Expression Profile