RNA id: XM_034303029.1


Basic Information

Item Value
RNA id XM_034303029.1
length 3663
RNA type mRNA
GC content 0.46
exon number 19
gene id slf2
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 19173240 ~ 19185983 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGCTGACTCCGCCCACTGATAGATGGCGGCTTCTTAGAGTGAGGGCgaaattttgcttatttcacaCGGATGTCATTCAGAGGCacggttggaaaaaaaaaaaaactgtggctGACCTTTCATTTTCGTCTTCCTTCTGACACGAGAATGTAGTGAAGGTTGGAAGGCCTGTGGTGCAGATAGGGAATACTCAGCATAAGATGCATCCTCTTCCCATTTCCTCTTCTGTGCCTGAGAGCCACAAAGCGTCAGCTCCACCAAACCCTCAGAGAAGACAGAGTCTTGACAGTAGTGTGAATCAGCAAAGCCAGCAGTCTGTTGAAAAGATGGACAAGCCAATCGGGGATCACAGCTCACCTTCACTTAGCCAGGGAGAACACATGCATCACCAGGCAACTACACCAGcaAGTGGCAGATCTCTGTCCCTGAAGAGGCGAAGAGAATCCAGTGCAGAAAGACAAGGGGAGGGCAAGAGATTGTGTCAGGAAGAAGTTTTACTTACCCCATCTTCTACTAGTGGCAGTTCTTCCCATTTCAGCTCACCACCAAAGTTTATCAAACGTGCCTTCTTGAAGACATTTAATGAGCCTGTGCTGACTCTAAATGAGAAACGCTCCCCAGCATTAAATAATCGTACTGGAGACAGGATAAAGGCTTCAAACAATGTAGCCAAACAGCTTTTTCAAGAACCAAGGACAGAAAGCCATCAAAAAGAAGAGATGAGAAGgtctactgaaaataaatgtcttaTAAGTAACACAGCCACTGTTGACCCTTGCCCCTCACTTTCCAGCAAACCAAACCAGAAACAGGGAGAAGGTGGTTCCCCTGTCTCCTCACACACAAGTTCTTTGCCTGGCATTACAGATAGCTTTGAGATCAGCTGTCCTCTCCAACAACCAAAAGTTACTTCACCCAGCTCTCAGGACGTCATGGGCTCACACGATTCAAAGACCATTACCAGAGCCAGGAAGGATGTAGAGGAGAAGAGCGACCTGGTGTGGAATGATCCTCTAGATTTGGACCTGGGCGAGGATGTGGGGTTGGACAGCTGTGCTCTCAGCCTCAGCAGCAGCCATAGTAGCAAGGAGGATCATCTGCTGTCTTTTCAGGAGATCCTAGAGCGCAGCACCCGTGTGCCCGCCAGTCCAGAGAAGGCGACGTTCTCTGAGCCCAGCACTCCAGGCCTTAAAGTTGCTCCAGAGGATCTTAAAAATAAGACTACAAGTTACAAGAACACATTGGAGCAAATGCTGAAGGAGAAGGAGCAGAATCGAAAATCTAAGGAGCTTGAAATGCAGCTGCTACAAGCTTGTAAAGAAGACTTGTTAAAACtggatgaagaggatgaaaatGCAGAAGAAGGACTTTCACATGAGCAAAGGGAATTCTTACAGAGATTCTCAGTTACCTCATGCGTCATAAGAGACATCCACCCTGGAGAGGAAGTGTTCACTCTCACCAACTCTGGCCGACTCTTCAACCATCAGAGTCTGGACTTGAGGAAGATGGGTGTTACCCCGAACAACAGAGCGCAGCAGACTCTGCTACAAGTGCATTCAGAAcagcttctgctgctgctgagtgCAGGCTTGTTTAGAAGAGCCTACTCATCCTCCCCCTGCCAGCCTCAGGTCACCCGCTGGCTTTTTCAGATGATGTCAGTCCACCCAAACCCCATCATCTGTGCACAGATTCTTCAGGCCATGACGACTATTGCCTTATCTGCTGCTCAACAGATAGTGGAGAAAAGCAATAAGAAGTTTGAGGTGTGGGTGCCCAGTATACAGGATGTTGCTCTAGTCTTCCtcaacatgggtgtgtcatttaTCAGTTTGTTTCCATTGGAGGATCTACAACCCCCTTTCACTGAGGGAGATCTGCTCGAGAGTTTGGAAATCCAGCCTGATGGTACAAGAAGTGAGAAAGAAGGTGGCACATTTCCAGAGCACAATTTTGAGAACATTATCAAGTACCTGGCACTATGTGCAGCCTTGTGTCCAAGGGTGTACAGTGATGAGGAGCTGCTGCTGATGTTAACAGTGGTGTGTAGGGTCAGTCTGGAGACACGTTTACAGCTGCTGCCCACTGGAGACCTCAGCTGCCTGCTACAGCACCTCCTCAACAACATGACACACTGGGAAATACAGTTGTCTCAGGTTTGCCAGGCCATTACTAATCTGAGTGAGGATCACCACAACCTCAGACGGCTGGTACAGCTTCTACCTCACAGTGGCCGGGGAAAGCAATTGAGGAGACATGTGAGCGTGTCGATCATCTCTAAACTGTTAAACCACAGATGCACTTATACACCCTCATGCACAGAATTTCAGCTGTCTGATCTGAGATGTTATCTACCTCGTATGCGTCCCTCCTTGCTCTTAAAGGGCTTAATGGCTGCAAAGACCACAGAGCCGCAGGAGACTGATGACTGTGCCACCACTCCAGACCAACAGGCTTATTACCTCTGCTACAGCCTTTTGGCTTTGACAAACGAAGCCTCCAATTTTGAGTTTTTACCCTCAAAACAGAGAAACGAGCTGCTGCTACTGTCTGCTGAACTAGAGAAACACGTTAAATGTGACATCAGGGAGAGTGAGAAAATGCTTTACAGGAGTAAGgtaaAAGACTTTGTTGCTAGAATATATACCAAATGGCAGGTGCTGCTCCAGAGATCAAGACCCCAGGAGGGAAAGCTATATGATTACTGGAAACCTCTTCCTGAGGATGAAATGCCCACAAAGAAAGAGAGCCAATTCACTGAGCAGGGAGACACAGAGGAGTCACTGAGTGAGGAGTCTGACATTGTCCAGTCAGATGAGGAAGAGTGCATGGAGGAGAAAGATGAAGTATCAATGGAGAGTGAGGAAAAGCTAGAGGACAGTGTTGAAAAGATTCGAGAGAAGATTGAAGAGTTACAGGAGGTTTCGGCTGACATAAAAGAGAAGCAAAGCTTGATAAACCTGGATGACAAAGATGCAGAGGAGACGAAAGATGATATGGCAATAGATGAAGAACTACTAGGAGGAAGTTCTGAAGGGTCAGTAGAGAGTGATGAGGAGGAAGACCTCattaaaagagaagaagagCTTCTTAAAGATGATGAGTCTCTAGATAGAAATGTAGATCCTGCGGGGGGAGAAAATGATGAGCCTGAGGTACTAGAGCTTTTAGAGAAGCATGCAGATATGTTAGAGAAAACAAATGAGGAGTTACTCTTAGATGAATAGAGTCGCTTATTGACATCTGGACATGGTTGCCCTGCTTTCCTGTATCACCTAGACATAACTAATGTTACATGAAAGGGCAGCATCATACAAATGTAAGCCTCAGACAGAGTTTAAGCTATGCACTCCTAAGAATTTGTGAATGAGTGGAGAGCAGGTTTCCCCATGTCACTCTTTAGGTAATCTTAGGCTGTCCACATATATGCTCTGTTGTAGTTGTCAGTACAACTGTACCAGGCATTTACTTGCTTGGTTCAAGTCACTGTGCTACAGTATGAAAGAACACTTATTCTCTTCCCAAATATTATAATAAGCATGATGCACTGTACTGCCTTAACAACCCTGTAGAGGGGGCTTTTTCCTTATTCAGTCACTGCCACAGGGTTTCTCATCTTTAAGCTGCTGATATCTTAGTAATCTTTATTTACGTTttgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58001 lncRNA downstream 120489 19052527 ~ 19052751 (-) True G49053
TU57913 lncRNA downstream 203444 18969591 ~ 18969796 (-) True G48975
TU57908 lncRNA downstream 215781 18957157 ~ 18957459 (-) True G48970
TU57886 lncRNA downstream 243738 18928182 ~ 18929502 (-) True G48954
TU57878 lncRNA downstream 282428 18890563 ~ 18890812 (-) True G48947
TU58066 lncRNA upstream 4352 19190327 ~ 19190615 (-) True G49108
TU58155 lncRNA upstream 65618 19251593 ~ 19251863 (-) True G49184
TU58193 lncRNA upstream 214689 19400664 ~ 19400863 (-) True G49215
TU58214 lncRNA upstream 241771 19427746 ~ 19428725 (-) True G49232
TU58488 lncRNA upstream 502617 19688592 ~ 19688877 (-) True G49481
XM_034302895.1 mRNA downstream 2087 19138495 ~ 19171153 (-) True sema4ga
XM_034303009.1 mRNA downstream 58671 19065033 ~ 19114569 (-) False lzts2a
XM_026942868.2 mRNA downstream 90934 19065033 ~ 19082306 (-) True lzts2a
XM_026934553.2 mRNA downstream 128919 19036992 ~ 19044321 (-) True sfxn3
XM_026932754.2 mRNA downstream 154331 19011981 ~ 19018909 (-) True mat1a
XM_026940534.2 mRNA upstream 17137 19203112 ~ 19214161 (-) False wdr32
XM_026940524.2 mRNA upstream 17137 19203112 ~ 19214160 (-) True wdr32
XM_026940547.2 mRNA upstream 24304 19210279 ~ 19212029 (-) True pomk
XM_026943318.2 mRNA upstream 31639 19217614 ~ 19219603 (-) True zgc:123321
XM_034302920.1 mRNA upstream 36451 19222426 ~ 19235665 (-) True alms1
TU57664 other downstream 559839 18330368 ~ 18613401 (-) True lrmda
TU56951 other downstream 1511856 17657581 ~ 17661384 (-) False col13a1
XR_004577786.1 other downstream 1598818 17562332 ~ 17574422 (-) False LOC113538666
XR_004577787.1 other downstream 1598818 17562332 ~ 17574422 (-) False LOC113538666
TU56907 other downstream 1697179 17471187 ~ 17476061 (-) True cisd1
TU58169 other upstream 130512 19316487 ~ 19319733 (-) True G49195
XR_004577815.1 other upstream 449863 19635838 ~ 19667661 (-) False atrn
TU58944 other upstream 1171959 20357934 ~ 20369097 (-) False gng2
TU58943 other upstream 1172013 20357988 ~ 20369097 (-) False gng2
TU58946 other upstream 1172013 20357988 ~ 20369429 (-) False gng2

Expression Profile