RNA id: XM_026941983.2


Basic Information

Item Value
RNA id XM_026941983.2
length 1654
RNA type mRNA
GC content 0.44
exon number 4
gene id si:dkey-187a12.4
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 14289382 ~ 14292863 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAGCTTGAATTTTGGAAACATTTTTGCCCTAACACTGGTTTGTGGTCTCTAATCTGTTTGGATGTGTCCTGTGTTCGCCCCGGTGCTTTATGGGAATTGTAGTTCCTGAAGGTTCTGGAAACGTTGCAGTGACGTTGCGGTAACGTGACATAACGTTAGCGAGCTGGAGGCAGTTTGACAACCACTTCCGCCTGTTTTCTTCGCAAGTCTTTGTCTTATGTGCTTAGTAAAAAAGAAGAGTTGAGGTGTTGTGAAGTCGCGCTGTGTAGGCTAGTCAGCTAGAATAAGAGCGATGGAAGGCAGTAATGGCACCAGCTCGAAGTGGGCGATGGAGCGGCGGGTGGAGGGGCTGGTGAACAAACACATGGCAGACATGGCACTGGACACACTTCAGCAGCGACTCTCTGCTGTGTCCCAGGAAATGAACCATCTGTCTGCTGAAATATCCAGACGAGAGGACTCGAAGCGTGTGGAGGATTTACCGCGGAGGAGTGACCCTCACTTCATCACAGGCTCTCTCCCGGAGTCTTATCACGAAGAGCTagtggaagaaaaaaagttaatgccAAACACATCCACATCAACATCCACATCaacatcctcctcctcctcctcctcctcagcagAAACTGCAGCTCAAAGAAAAATCATATCACTCCTGCTGGAgataaaagaagaacaacagAGGCAGTGGGCTGTGCTAAAAGACCTGCAAGCCATGATTCAAGGACACATGTGTGAGGAGGATGTTGAAACTCTGGATATAGATCTACCACTACAGACAATGGAACAGCTTGATGAAACAGAGAGATACTTGGAGAATGATGGAGCGCAGAAGAGAATGGTGTCTCACCTCTCCCGGATGGGTGGTGCAACAGTGGATGATGCAGTTAGACGCCTGATGCAGGCAGTTTTATCTTTCAGCGTCGGTTCTGAGCTGAACTGGGTTGGTCGAGGACAAAAAAGGAGCTTCAGAAATACCAGACTGCAAGGAGTTTTATTCCGTGCATTAAAGAAGACCCCTGTAGGAAAGGAGGCCACACACCATCAGTTTGCAGATGTAGTGAAGAAGTGGCTGCGATTTGCTCCATTCAGACAAGGAGGCAGCGGTCGGAGACAGCATTACAAACCTCCTGTAGAATTCATGTGCCCTAAGTATCATACTGATACAGAAGGGTGACAACAGTGTCTTATTGTTCACCATCCTGTTTCAACACAGTTCAAAGTAAAATTccaattaaaaaacacattttcatgtttctctgtgaatttttttttaatgagactTCTAAAGTATGATACAGCAGGAAAATGACCTCCCTCAATATTGTCTTAAAGCATAAAAAACAGTTCTAAAGCAGTACATGTTTGGGTTATCTGAATCATGAtttatgaagtattttaatctgttcactgaaaatgaaaagtatcattatttaaatattagtttgAGACTAGTATTCTGGCTTTACTAGATTTAGTTGCAGGTGTTCCTACAGGTAAcacaatgtaatgtaatgttttttagGAGTCACTCATGAGGTTGGGATGTAAAATCATGATATGCTCGTCCAGATGTCTACAGATTATAAGTGCCTTTCTGAAAATAGAAAGCCGAGTCTGTCCAGTTCATCATTCCACATGATACTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54602 lncRNA upstream 1095 14286650 ~ 14288287 (+) True G46217
TU54606 lncRNA upstream 1164 14286650 ~ 14288218 (+) False G46217
TU54604 lncRNA upstream 1164 14287418 ~ 14288218 (+) False G46217
TU54553 lncRNA upstream 105736 14183437 ~ 14183646 (+) True G46176
TU54552 lncRNA upstream 106189 14182991 ~ 14183193 (+) True G46175
TU54753 lncRNA downstream 95166 14388029 ~ 14388311 (+) True G46337
XR_004577856.1 lncRNA downstream 324745 14617608 ~ 14626226 (+) False LOC113541837
XR_003404224.2 lncRNA downstream 324753 14617616 ~ 14626490 (+) True LOC113541837
TU54851 lncRNA downstream 324791 14617654 ~ 14626372 (+) False LOC113541837
TU54849 lncRNA downstream 331610 14624473 ~ 14626473 (+) False LOC113541837
XM_034303068.1 mRNA upstream 2840 14213369 ~ 14286542 (+) False slc24a3
XM_026944022.2 mRNA upstream 2840 14213402 ~ 14286542 (+) True slc24a3
XM_026943791.2 mRNA upstream 92308 14193834 ~ 14197074 (+) True soul2
XM_026939331.2 mRNA upstream 232919 14035638 ~ 14056463 (+) True fancl
XM_026941819.2 mRNA upstream 655904 13588316 ~ 13633478 (+) True bcl11aa
XM_026937917.2 mRNA downstream 3471 14296334 ~ 14328299 (+) True rin2
XM_026944267.2 mRNA downstream 38629 14331492 ~ 14341288 (+) True slc17a5
XM_026941730.2 mRNA downstream 53734 14346597 ~ 14351235 (+) True eef1a1a
XM_034303103.1 mRNA downstream 53814 14346677 ~ 14351235 (+) False eef1a1a
XM_026945100.2 mRNA downstream 68504 14361367 ~ 14368100 (+) True cgas
XR_003404567.2 other upstream 6214 14213402 ~ 14283168 (+) False slc24a3
TU54033 other upstream 788336 13498092 ~ 13501046 (+) False pcbd1
TU53738 other upstream 1256134 13032279 ~ 13033248 (+) False si:ch211-223p8.8
XR_003404144.2 other upstream 1289420 12982406 ~ 12999962 (+) False col17a1b
XR_004577802.1 other upstream 1352580 12929559 ~ 12936802 (+) False spef1
XR_004577898.1 other downstream 68504 14361367 ~ 14367446 (+) False cgas
TU55629 other downstream 1500565 15793428 ~ 15797204 (+) False eif4ebp2
XR_003404341.2 other downstream 1777851 16070714 ~ 16073067 (+) True cxcl18a.1
TU55689 other downstream 1777896 16070759 ~ 16071920 (+) False cxcl18a.1
TU55884 other downstream 1941672 16234535 ~ 16236648 (+) False lrrc18a

Expression Profile