RNA id: XM_026942038.2


Basic Information

Item Value
RNA id XM_026942038.2
length 2411
RNA type mRNA
GC content 0.43
exon number 17
gene id kifc1
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 23727152 ~ 23750761 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTTGACCAATGGTAACGCTACCTGAACGGCGGCAAAAGATTTAAATTCAAACAGCTTTGAAAATACTTTGGGTGCAGTTCGGTGTTTTGCTACGTGTTCGTTTGTCGAAGAACAATCTGGCAGGATAAATGAGCAAAGAGAATACAACGTCCCGTTTACCGGTCATGTCGAAGAGACCTCTCTCCAGCACCACTGATGGAGAGCATCAACAGTCTGCACCGaaaAAGATGCGAAAAGTTGAGACAGGACATCAGAGGCTCAAACCTTCTACCAGTGTGGTCCCTCCAAAACGTCCTGGGCCAGTCAAAGCAACCAataaACTGCTTGCTCCAGCCAGAGCAGCAACGGTGGCAGCAGCTCCCTCGAGAGgtgATGCAAAAAAGCTATCTGCACATGCACCAGTTGCTAAAGGAGCATCCAAGAGACCAGGATGGGACTTGAAAGGAAAAGTCGCTGACCTGGAAAACAAAATTCAGAATTACCAGAGCCGTTTGAAGTCTTTTAACCAAGAAAACGAGGACCTTAAAACATCAAATGCAgaagtgcaaaaaaacaagacacaaGCCCAAGAGGAGAACAAGCATTTAAAACAGCGTCTTGGGGCCCTTGAGGAGAAGCTAACTAATCTGGTATCTGTGAAAGAGGAGCTGGAGAGAACTAGTAAAGAAAAAGATGGCTTGCAGAAAGACCTGAAGAAGCTAATGGATGAAAATGGGATATTGCTCAAGTTAAGAGATGATCTGACTACTGAAATCTGCAATATACAGGGTCAGCTTTCTATTCAGACTTCTGCTCTGGCCCACTGTCAGGACAGTCTCAGAGCATGTCAGGATATGGTAAAAAGCTTACAGGAGTTGGTGGCCAGGCAGCAGGATGAGCTCCACTTTGGAGAAATGGAGCGTAGGAAACTCCATAACACGATTCAGGAGCTGAAGGGTAACATCAGAGTTTTCTGCAGGGTACGTCCTCTCCTTTCCAACCGGGAGGCAACCATCCCACACGTTCAACTGCCTGCTCATGACAACAAGGCTATAACACTTGCAAAAATAGAAGAGTCGCATGTGGGACGTGCTGCAGAAACTCAGAAGAATTACATCTTCAGCTTTGATCGTGTGTTTGGCCCACACAGCACCCAGAGTGAGGTGTTCGAGGAGATCTCCCTCTTGGTGCAGTCAGCTCTGGATGGTTACAATGTTTGCTGCTTTGCATATGGCCAGACAGGTAGTGGCAAAACATTTACAATGGAAGGTGGTGACATGGAGGACATGCGGGGCGTCATTCCACGAGCTGTCCAGCAGATTTTTAAGTCTGCTGACATCCTTCAAGGGCAAGGCTGGCAGTACACATTTACAGCCAGCTTCGTTGAAATTTACAATGAAACCCTGCGGGACTTGCTTTATATGGGCAAACCTAACAAGAGACCAGAGCTTGAAATCAGAAAGACCACAAATAATGAGGTCACAGTCACCAATCTGAATTACCAGAGGGTCACCACTGAGGATGAGGTTTGCAAGTTGATCATCTTGGCAAACCAAAACAGGTCCACCGCCCGAACAAACATGAATGATCAATCATCTCGTTCCCATTCCATTTTCCAGCTGGACATAGAGGGAGAAAACACTGGCAGAGGCACCAAGTGCAAATcctCCCTTTGTTTGGTGGATTTGGCTGGCAGTGAAAGGGTCCAGAAAAGCCAGTCTCAAGCAGAAAGGTTTAAGGAAATGACTGCCATAAATTCTTCACTCACCAATTTGGGACTTGTCATCACTGCTTTAGCCAACAAgGAGAGCTTTGTGCCCTATCGCAACTCAAAGCTTACTTACCTACTTCAGGGGTGCCTGGGTGGCAACAGCAAAACTTTGATGTTTGTAAACATTTCACCTGAAGAAGAGAGTTTTAGTGAATCACTTAATTCTCTGCGCTTTGCCAGCAAGGTGAATGACTGTGTTATTGGAACTGCCACAGCCAATAGGAAGTAGCCTTTTGTTACTTCTTTTTGATCCTCTGAAGGCACCATTACTTGtacatctttctttttcagtataCATTCTCTGCCTTGCATTTTGAAGATTCCATAACATGacgtttttaatccattttattactttctttatattttaaaaagcttattaaatgttttgttttgtttgctatgTGAAATTACCTGGACTTTATCAAAACCAATTAAACAGAATTAAGTTTGTTGATCAATGCATTCATTATAAAAACATGGCTAGTAGGTTTTATAACTACTATTTACAATACTTTccactgttttaattttttctgagtataattaaatcataatacatgtatgtaaaatatgctGTTTTTCCCCATGGTTATTCTGGTCATTACTGCTGTTGGGGAGGGGGGAGTGGcaacacttcaaaaaaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0007018 microtubule-based movement biological_process
GO:0005871 kinesin complex cellular_component
GO:0005874 microtubule cellular_component
GO:0005524 ATP binding molecular_function
GO:0003777 microtubule motor activity molecular_function
GO:0008017 microtubule binding molecular_function

KEGG:

id description
K10405 KIFC1; kinesin family member C1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61208 lncRNA downstream 2064 23724878 ~ 23725088 (-) True G51781
XR_004577813.1 lncRNA downstream 11212 23687649 ~ 23715940 (-) False LOC113544646
XR_004577812.1 lncRNA downstream 23025 23687649 ~ 23704127 (-) False LOC113544646
TU61160 lncRNA downstream 34289 23687614 ~ 23692863 (-) True LOC113544646
XR_004577814.1 lncRNA downstream 39653 23686729 ~ 23687499 (-) True LOC117596832
TU61335 lncRNA upstream 131266 23882027 ~ 23882335 (-) True G51876
TU61346 lncRNA upstream 194090 23944851 ~ 23946345 (-) True G51887
TU61365 lncRNA upstream 254627 24005388 ~ 24005685 (-) True G51903
TU61381 lncRNA upstream 357590 24108351 ~ 24129851 (-) False LOC113545393
TU61407 lncRNA upstream 385745 24136506 ~ 24136795 (-) True G51943
XM_026941612.2 mRNA downstream 47171 23672419 ~ 23679981 (-) True c1d
XM_034302271.1 mRNA downstream 47421 23672419 ~ 23679731 (-) False c1d
XM_034303119.1 mRNA downstream 678028 23032198 ~ 23049124 (-) True phf10
XM_026937353.2 mRNA downstream 749509 22964720 ~ 22977643 (-) False fam120b
XM_026937352.2 mRNA downstream 749509 22964720 ~ 22977643 (-) True fam120b
XM_034303048.1 mRNA upstream 87178 23837939 ~ 23840860 (-) True mgme1
XM_026936298.2 mRNA upstream 87178 23837939 ~ 23840680 (-) False mgme1
XM_026936389.2 mRNA upstream 111958 23862719 ~ 23867530 (-) True mrpl14
XM_034302988.1 mRNA upstream 111958 23862719 ~ 23867478 (-) False mrpl14
XM_026936398.2 mRNA upstream 111958 23862719 ~ 23867467 (-) False mrpl14
TU60979 other downstream 272935 23447908 ~ 23454217 (-) True G51576
XR_003404067.2 other downstream 938369 22774355 ~ 22788783 (-) False znf318
XR_003404066.2 other downstream 938369 22774355 ~ 22788783 (-) False znf318
TU60345 other downstream 1625769 22035285 ~ 22101383 (-) False LOC113540944
TU60082 other downstream 1776963 21949855 ~ 21950189 (-) True G50837
XR_004577819.1 other upstream 266503 24017264 ~ 24040100 (-) False mlh1
XR_003404244.2 other upstream 702358 24453119 ~ 24651847 (-) False lyst
XR_004577838.1 other upstream 720942 24471703 ~ 24651847 (-) False lyst
XR_004577835.1 other upstream 931485 24682246 ~ 24735887 (-) False herc4
XR_003404274.1 other upstream 2159257 25910018 ~ 25910119 (-) True LOC113542183

Expression Profile