RNA id: XM_026942068.2


Basic Information

Item Value
RNA id XM_026942068.2
length 1916
RNA type mRNA
GC content 0.47
exon number 5
gene id tacr2
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 9816288 ~ 9828253 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCCACTCATGTTGGCCAATTACGCACCAGTAAGCTGCAGGAGGTGCTACAGACTTGCTCCACATGAGAAGGCGCACTGACCCTTatttcacttttctctctctgcaacTTCTGAATTCCTATCTGTGAGGAAAAATGAACACGTTTTCAGCATGTGCGCGACGCATATCTTCAGTCCCGACTGCGTTCCTGATTGCCACTACAGGAAATGTCCTGCACCACTGATCCGTGTGGCACTCCTGGAGCGAGCGGGGACTGAGATGGAGGCGACCTCGGATCCGCTCTCGTTCACATCAGTGCTTTACGACGGAGGTGATGCTGATGAGGGGAACGAGACCTCCGCCAATCAGTTCGCGCAGCCCGCGTGGCAAGTGGCTCTGTGGGCTCTCGCCTACTCTCTGGTGGTGCTGGTGTCTGTGGTGGGAAATGTCACGGTGATCTGGATCATCCTTGCGCACAGACGCATGAGGACGGTCACCAACTACTTCATCGTGAACCTGGCCTTCTCCGACGTCTCCATGGCCACCTTTAACACCGTCTTCAATTTCGTTTACGCACTGCACAACGACTGGTACTTTGGTTTGGGCTACTGCAAATTTCAGAACTTTATCCCCATCACTGCTGTCTTCTCCAGCATCTACTCAATGGCTGCTATCGCTGTGGACAGATACATGGCCATTATCCACCCTTTGAGGTCCAGACTGTCTTCTACTACCACCAAAGTAGTGATTGGTGTTATATGGGCTGTGGCTTTTTCCTTGGCTTTCCCTCAGTGTTTCTATTCAAGCACCAAGGTCTACTCCCACCGCACGGTCTGCATGGTGGAATGGCCTGATGACTACGGTGGAAAGCACCAGCTCTCGTACCAGATTGCAGTCATTATCCTGATCTACTTGCTTCCCCTGCTGGTGATGCTAGTGACCTACAGTATGGTGGGCCAGCGTCTATGGGGCAGCAAGATCCCAGGAGAGGCATCAGACCACTACCAGAACCAGATTCAGGCCAAGCGCAAGgtcGTGAAGATGATGATCGTTGTTGTGACAACCTTTGCTGTATGCTGGCTCCCCTATCATATCTACTTCATCCTGGGTAGCTTCAAGAAGGATATATACAACCAGCATTACATCCAGCAGGTCTACTTGGCCATCTTCTGGTTAGCTATGAGTTCCACCATGTACAACCCCATCATATACTGCTGCCTGAACCAAAGATTCCGGTCAGGTTTCCGGCGAGCGTTCCGTTGGTGCCCATTCATCAGGGTCTCAGAGGAGGATGACATGGAGCTGCGGCACATGAGAACCTTCCGGACAACACGCAGCTGCCGAACAGAGACCAATAGTGTCATGGTCCGGAACCATGTCAATGTGCCAGAGGAGGTCATGTCCAAGCTGATTAAATCCTAGGCTCCCTTCACTGAAGGCTCAAGACAGAGGCTCTGAAAAAGAAATGCGTAGAGCATAGTCACACTAACTCCAAATACCTCACAGAGAACTTTAATACAGAGAAGTTTAATATGGATGTTGTTCCAGTGGATTAGAAGTGTACTTCCATAGCTTAAGCGCTAATCTTATTTGTCGCTGCTTTATGTTTTGGTCGgttgtttgtatgtgtatttttgtgtttcattaAACACTCTGTGAAATGTGcgaactgtaaactgtaaatactACCTAATACTGTCAAGTGGAACATCtcgttataaaaaaaaaaattgttgtaaaGTTAAGATTTGACCTGCAGTAGACATAAGATCTCTTTGCAGCCTTTTTAGTGTGCTACCTGTTATGAGTTATCAGTTAGAAAGGATGTAAATTGATAGatgaatgtgaaaaatgttcagaaaagGAGGCCAGCTTGCTCATagtgataaaaaaatatacatatctTCCAGAATTATATGACACACGTGTCCTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003404277.2 lncRNA downstream 10058 9782665 ~ 9806230 (-) True LOC113542224
TU51524 lncRNA downstream 53732 9762297 ~ 9762556 (-) True G43588
TU51523 lncRNA downstream 54476 9761613 ~ 9761812 (-) True G43587
TU51522 lncRNA downstream 54821 9761244 ~ 9761467 (-) True G43586
TU51505 lncRNA downstream 56076 9759476 ~ 9760212 (-) True G43569
TU51675 lncRNA upstream 84398 9912651 ~ 9912875 (-) True G43722
TU51676 lncRNA upstream 85087 9913340 ~ 9913709 (-) True G43723
TU51677 lncRNA upstream 86332 9914585 ~ 9914978 (-) True G43724
TU51678 lncRNA upstream 86938 9915191 ~ 9915802 (-) True G43725
TU51679 lncRNA upstream 88428 9916681 ~ 9916900 (-) True G43726
XM_026944230.2 mRNA downstream 81081 9723581 ~ 9735207 (-) True pik3ap1
XM_026944122.2 mRNA downstream 96370 9668721 ~ 9719918 (-) True LOC113544990
XM_026944090.2 mRNA downstream 96392 9668721 ~ 9719896 (-) False LOC113544990
XM_034303187.1 mRNA downstream 96395 9668721 ~ 9719893 (-) False LOC113544990
XM_034303188.1 mRNA downstream 96395 9668721 ~ 9719893 (-) False LOC113544990
XM_026934239.2 mRNA upstream 68984 9897237 ~ 9902912 (-) True hnrnph3
XM_026939846.2 mRNA upstream 115987 9944240 ~ 9959459 (-) False nfkb2
XM_026939857.2 mRNA upstream 115987 9944240 ~ 9955032 (-) True nfkb2
XM_034302934.1 mRNA upstream 133707 9961960 ~ 9976011 (-) False shld2
XM_034302933.1 mRNA upstream 133708 9961961 ~ 9976416 (-) True shld2
TU51003 other downstream 587404 9224881 ~ 9228884 (-) True sf3b5
TU50809 other downstream 962494 8801243 ~ 8853794 (-) True G42967
TU50810 other downstream 962494 8849109 ~ 8853794 (-) False G42967
XR_003403913.2 other downstream 1032490 8755869 ~ 8783798 (-) False zdhhc5a
trnae-cuc_7 other downstream 1345859 8470358 ~ 8470429 (-) True trnae-cuc_7
trnag-gcc_1 other upstream 1880361 11708614 ~ 11708684 (-) True trnag-gcc_1
TU53378 other upstream 2316642 12144895 ~ 12152506 (-) False tmem254
TU53492 other upstream 2696383 12524636 ~ 12534075 (-) False LOC113537616
TU53486 other upstream 2703190 12531443 ~ 12534075 (-) False LOC113537616
TU53537 other upstream 2803560 12631813 ~ 12633015 (-) False LOC113539135

Expression Profile