RNA id: XM_026942091.2


Basic Information

Item Value
RNA id XM_026942091.2
length 1269
RNA type mRNA
GC content 0.49
exon number 11
gene id nsmce4a
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 15085196 ~ 15090877 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtagtgcacttaGGTAGGGAGTGTGTGGctgtttgggattcagccaaGTATGCAAATCGGACAGAAGTCTACTTCCGTGTTTATTTTCGCGCGAAGCCATTCTGTAGCTGGGACCGGTATTCTGCAGGTTGTAAGTGTAATCCCAAACAGAAATACTTCCACGCTTTCAAACAAGGCCTTGTTAAAGATGTCCGATTCGAGACGGAGGGCCAGCAGAGGCAGTCAGGAGGAGGCTTCTGGTCATGGTAATGGAGTGGGTGGACGCGGTAGACCAGAAAGAGCAGCAGACACGGGTGAGGATGATGAAGCAGCAGGTCCATCAGGCATCCACGAGGAAGACGACGACCCTGCCAGGCGGAGGGAGATCAGAAGCCAGTACAGGGATCTCATCAACTCTGTTCAGCAAAACCGTGAGGACATGCTGAATCCTGCCAACAATAAACTGTGTGATGTGTTAGAGGAGGCCAACAAACTGTTTGCTAATGTCAGGCAGGCTCGAGAGGCTGCACTGGATGCACAGCTGCTTGTCCTAGCCACAGACCTGGGGAGAGAAAAGGCCAGCCAGCTGCATGCTGAGGGTTCAGCTTTTGACCCGTCTGCATTTGCAGAGCATTTGTTGTCCTTCATGGGTCTCAATCGCttagaagaggaggaggatggtgaTGCCGGTTTGGATGGGTATATGCCTCCAGATGCCTGGCAGCGGCTTTCCAAAAGAGCACAATATTGCTTCAAAACAGCTCCTTCATTCCACTACATGTTCGGCTCATTTTTGGCTGAACCACCACCACCACGGCAGCGGGTTGAGAGACAAAGGAAAGCTCCCAGCAAAGAAGCAAAAAGAATCATGCCCACTCAGCTAAAGAAAATGGAAGAGTCACATCAGGAAGCTACAGAGAAAGAGGTGGAGAGGATTTTGGGGTGCCTTCAGCGTTACTTTGCTGATGATCCACAGTCCCCGATATTGTATTACGAGTTTGTTGTTGACCCTAGCTCCTTTTCCCGGACAGTGGAGAACATTTTCCACACCTCGTTTCTTATCAGGgaCGGCCTGGCAAGGATTTATCTAAACAATAACAAACTTCCTTGTATAGCTCCAGTTGAGGAGGGGGAGTTAGAGCCCGGAGGTGCCAACACCCGTCATCAGTGTGTCATCTCAATCAGTCCAGCTAGCTGGAGGGAGATCATTGAGGCCTTTGATATTAAGGAGGCTTTGATTCCCACCCCAAAAGTATTGTCACAAGAaggctgatttaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0030915 Smc5-Smc6 complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55286 lncRNA upstream 894 15079813 ~ 15084310 (+) True G46765
TU55287 lncRNA upstream 894 15081653 ~ 15084310 (+) False G46765
TU55220 lncRNA upstream 70023 15014123 ~ 15015181 (+) True G46713
TU55127 lncRNA upstream 73215 14965906 ~ 15011989 (+) False G46638
TU55373 lncRNA downstream 328152 15419029 ~ 15419642 (+) True G46833
TU55393 lncRNA downstream 382324 15473201 ~ 15473870 (+) True G46849
TU55615 lncRNA downstream 620260 15711137 ~ 15715524 (+) True G47043
TU55651 lncRNA downstream 802704 15893581 ~ 15896079 (+) True G47071
TU55664 lncRNA downstream 942427 16033304 ~ 16035339 (+) True G47084
XM_026940574.2 mRNA upstream 7147 15059462 ~ 15078057 (+) True prom2
XM_026940583.2 mRNA upstream 7147 15065121 ~ 15078057 (+) False prom2
XM_026941688.2 mRNA upstream 26425 15034068 ~ 15058779 (+) False ldb1a
XM_026940316.2 mRNA downstream 953 15091830 ~ 15156743 (+) True tacc2
XM_026940325.2 mRNA downstream 953 15091830 ~ 15156743 (+) False tacc2
XM_026940329.2 mRNA downstream 953 15091830 ~ 15156743 (+) False tacc2
XM_026940333.2 mRNA downstream 953 15091830 ~ 15156743 (+) False tacc2
XM_026940341.2 mRNA downstream 953 15091830 ~ 15156743 (+) False tacc2
XR_004577898.1 other upstream 717758 14361367 ~ 14367446 (+) False cgas
XR_003404567.2 other upstream 802036 14213402 ~ 14283168 (+) False slc24a3
TU54033 other upstream 1584158 13498092 ~ 13501046 (+) False pcbd1
TU53738 other upstream 2051956 13032279 ~ 13033248 (+) False si:ch211-223p8.8
XR_003404144.2 other upstream 2085242 12982406 ~ 12999962 (+) False col17a1b
TU55629 other downstream 702551 15793428 ~ 15797204 (+) False eif4ebp2
XR_003404341.2 other downstream 979837 16070714 ~ 16073067 (+) True cxcl18a.1
TU55689 other downstream 979882 16070759 ~ 16071920 (+) False cxcl18a.1
TU55884 other downstream 1143658 16234535 ~ 16236648 (+) False lrrc18a
XR_003403773.2 other downstream 4250473 19341350 ~ 19356098 (+) True sfxn5a

Expression Profile