Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_034302969.1 |
| length | 1138 |
| RNA type | mRNA |
| GC content | 0.50 |
| exon number | 11 |
| gene id | nsmce4a |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 15085196 ~ 15090877 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006281 | DNA repair | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0030915 | Smc5-Smc6 complex | cellular_component |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU55286 | lncRNA | upstream | 1002 | 15079813 ~ 15084310 (+) | True | G46765 |
| TU55287 | lncRNA | upstream | 1002 | 15081653 ~ 15084310 (+) | False | G46765 |
| TU55220 | lncRNA | upstream | 70131 | 15014123 ~ 15015181 (+) | True | G46713 |
| TU55127 | lncRNA | upstream | 73323 | 14965906 ~ 15011989 (+) | False | G46638 |
| TU55373 | lncRNA | downstream | 328152 | 15419029 ~ 15419642 (+) | True | G46833 |
| TU55393 | lncRNA | downstream | 382324 | 15473201 ~ 15473870 (+) | True | G46849 |
| TU55615 | lncRNA | downstream | 620260 | 15711137 ~ 15715524 (+) | True | G47043 |
| TU55651 | lncRNA | downstream | 802704 | 15893581 ~ 15896079 (+) | True | G47071 |
| TU55664 | lncRNA | downstream | 942427 | 16033304 ~ 16035339 (+) | True | G47084 |
| XM_026940574.2 | mRNA | upstream | 7255 | 15059462 ~ 15078057 (+) | True | prom2 |
| XM_026940583.2 | mRNA | upstream | 7255 | 15065121 ~ 15078057 (+) | False | prom2 |
| XM_026941688.2 | mRNA | upstream | 26533 | 15034068 ~ 15058779 (+) | False | ldb1a |
| XM_026940316.2 | mRNA | downstream | 953 | 15091830 ~ 15156743 (+) | True | tacc2 |
| XM_026940325.2 | mRNA | downstream | 953 | 15091830 ~ 15156743 (+) | False | tacc2 |
| XM_026940329.2 | mRNA | downstream | 953 | 15091830 ~ 15156743 (+) | False | tacc2 |
| XM_026940333.2 | mRNA | downstream | 953 | 15091830 ~ 15156743 (+) | False | tacc2 |
| XM_026940341.2 | mRNA | downstream | 953 | 15091830 ~ 15156743 (+) | False | tacc2 |
| XR_004577898.1 | other | upstream | 717866 | 14361367 ~ 14367446 (+) | False | cgas |
| XR_003404567.2 | other | upstream | 802144 | 14213402 ~ 14283168 (+) | False | slc24a3 |
| TU54033 | other | upstream | 1584266 | 13498092 ~ 13501046 (+) | False | pcbd1 |
| TU53738 | other | upstream | 2052064 | 13032279 ~ 13033248 (+) | False | si:ch211-223p8.8 |
| XR_003404144.2 | other | upstream | 2085350 | 12982406 ~ 12999962 (+) | False | col17a1b |
| TU55629 | other | downstream | 702551 | 15793428 ~ 15797204 (+) | False | eif4ebp2 |
| XR_003404341.2 | other | downstream | 979837 | 16070714 ~ 16073067 (+) | True | cxcl18a.1 |
| TU55689 | other | downstream | 979882 | 16070759 ~ 16071920 (+) | False | cxcl18a.1 |
| TU55884 | other | downstream | 1143658 | 16234535 ~ 16236648 (+) | False | lrrc18a |
| XR_003403773.2 | other | downstream | 4250473 | 19341350 ~ 19356098 (+) | True | sfxn5a |
