RNA id: XM_026942108.2


Basic Information

Item Value
RNA id XM_026942108.2
length 1865
RNA type mRNA
GC content 0.49
exon number 6
gene id sgms2a
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 7126787 ~ 7140910 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTACcatctgtgtgcatgtggaaGACATTTTCCCCTGCCAGCTTTCCACCACACATGTCCCCATCAGGGCAGAAGGGTGGAGGCTGGGGAAGCATGCCACTCCGAGTTTGAGAGAGCGAGAAGGATAAggctggaggaggaggacacacacacacacacagagacgcacacacacatacgcaggGACATAAGCTACAGCTGGGATTGCGTGTGACTCCAGGACAGATCTGTGGTATTCAGCATTCAGATGTCGTCGTCTGGATGCTGGAGCGCCACACCTGAAACCTCGAACCCTGAAGCCATTCATTTGCAGCAGTGACGTGGGCCGGTCTGGGGGAAGCAGCCACGCCTGGTGGATCACAgtctgtgtgtgattagtggGTAGCGTGTGGGGCTCTCATGGCATCAGCAGACCACCAATGCGAGCGACACCCCACAGGTGCCCACCCACACATCCACCCGCAATGCCCTGTACACAGCCCTTCAGCAGAGGAAGTGAAGAACAGTGGCCTACGCAAGGGCTTGAGCAGACACAGAGACTATGTGAAGATCTCTGTACCTGATGGCAAGGGCAAGCCTCCACCCATGGAGTGGTGGAAGACGGTGATTGCATTCGTGTACGCAGCTTTTAACCTGGTGCTGACCACGGTGATGATCACAGTGGTGCACGAGAGAGTCCCAGAGAAAGACAGCAGCCCACCACTGCCGGATAAGTTCTTCGACTATGTAGACCGCGTGAAGTGGGCTTTCACAGTGACCGAGGTGAATGGGATGCTGCTGGTGGGGATTTGGTCTATACAATGGCTCTTCCATAGATACCGGGCCATCTTGGGCAGGAGGTTCTTCTTCCTAATGGGCACTTTGTACCTGTATCGCTGCGTCACCATGTACATCACCACTCTGCCCGTGCCTGGCATGCACATGACCTGTGCCCCAAAGctctatGGAGACTCCCAGGCGAAACTACAGCGAGTTCTGCAGCTGATGTCTGGAGCTGGCCTGTCCATCACTGGTTCCCACATCATGTGCGGTGACTTCCTGTACAGCGGCCACACGGTCATGCTCACCCTCACCTACCTGTTCATCAAGGAGTACTCCCCCCGTTCGTTCTGGTGGTATCACCTGCTCTGCTGGCTCCTGGCTGCAGTGGGTGCAGTGTGTATCCTCGTGGCTCACGAACACTACAGCGTGGACGTGGTGGTGGCATACTTCATCACCTCCCGCCTCTTCTACTGGTACCACACCATGGCCAATGTACAGGCTCTAAAGTGTTCGCCCAACAACTACCTCACGCACACGTGGTGGAACCCCATCTTCAACTTCCTGGAGCGTAATGTGCAGTCGCAAGTGCCTTGTTCGTTCTGCTGGCCGCTGACGTGGCCTCCAGCCTGCCTGAAGAACCCGTGTAAAAAGTACTCCATGGTGCAGAGCGTTCGCGAGGAGTGACTGTCACATCTTCACCTCCACACTGTTACTTTTCTTTACAAATACATACAGATCCTTTATTTATGAATACCTGAAATCTTGCATATCAAGAATACCAAAGACTTTGTGAAGGGGTTGTGAGAAATCAATGGCTCAggtttaatcattattaaaaagatgaaaaaaaaaaaaacattaagcccatttttttttgtttggaaacCATGCAAAattcaataattttaaaaactttaccTGTTactaattgatttttttttcccaaataaattaatatgcaaTGAATTATATGTAGAATATTCTATGAATAAATGGTAttcaccttgattttttttttttaactcaatgAAGTGGTCGCAATTGTGCCTTTTTAAGCACGTAATGTTGAATTTTATTACTCAGTTTCAACTGTTTGttgaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49621 lncRNA upstream 109862 7016704 ~ 7016925 (+) True G41951
TU49521 lncRNA upstream 157948 6951392 ~ 6968839 (+) True G41857
TU49390 lncRNA upstream 423981 6662282 ~ 6702806 (+) True G41752
TU49280 lncRNA upstream 524624 6601912 ~ 6602163 (+) True G41654
TU49279 lncRNA upstream 527820 6598703 ~ 6598967 (+) True G41653
TU49784 lncRNA downstream 207250 7348159 ~ 7393784 (+) True G42093
TU49791 lncRNA downstream 220291 7361200 ~ 7364931 (+) True G42098
TU49923 lncRNA downstream 281182 7422091 ~ 7422296 (+) True G42208
XR_004577840.1 lncRNA downstream 332461 7473370 ~ 7475040 (+) True LOC117596850
TU50006 lncRNA downstream 483960 7624869 ~ 7630105 (+) False scoca
XM_026938759.2 mRNA upstream 209132 6844872 ~ 6917655 (+) False tbck
XM_026938752.2 mRNA upstream 209132 6845465 ~ 6917655 (+) True tbck
XM_026933883.2 mRNA upstream 331279 6779406 ~ 6795508 (+) True dkk2
XM_034302025.1 mRNA upstream 378723 6718851 ~ 6748064 (+) True papss1
XM_026934026.2 mRNA upstream 427268 6681141 ~ 6699519 (+) False abcg2d
XM_026942935.2 mRNA downstream 1529 7142438 ~ 7149125 (+) True LOC113544242
XM_026945753.2 mRNA downstream 9376 7150285 ~ 7155500 (+) True hadh
XM_026938402.2 mRNA downstream 150812 7291721 ~ 7315462 (+) True LOC113541438
XM_034302876.1 mRNA downstream 202377 7343286 ~ 7346567 (+) True LOC113542004
XM_034301187.1 mRNA downstream 213159 7354068 ~ 7356693 (+) True LOC113541239
XR_003404319.2 other upstream 1770090 5263582 ~ 5356697 (+) False znf827
TU48562 other upstream 1785037 5318534 ~ 5341750 (+) True G41047
TU47789 other upstream 3292176 3831949 ~ 3834611 (+) False LOC113545357
XR_004577910.1 other upstream 4961003 2165623 ~ 2165784 (+) True LOC113546173
TU45995 other upstream 5035566 2085465 ~ 2091221 (+) False stox2a
TU49753 other downstream 63041 7203950 ~ 7221023 (+) True G42075
XR_003404394.2 other downstream 508289 7649198 ~ 7666033 (+) False naa15b
TU50445 other downstream 1324838 8465747 ~ 8466312 (+) True G42685
trnak-cuu other downstream 1328715 8469624 ~ 8469696 (+) False trnak-cuu
TU52056 other downstream 3411350 10552259 ~ 10558295 (+) True sprn

Expression Profile