RNA id: XM_026942239.2


Basic Information

Item Value
RNA id XM_026942239.2
length 2834
RNA type mRNA
GC content 0.41
exon number 3
gene id LOC113543782
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 13333341 ~ 13338334 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAATTGGGAAATGTCAACACATGTTGTGTTGGATCACTGTTAACTGATGTTCTTAATAAGCTGGAATATTTACACAGTGGCTGGTTGTAGCCTGCAACGTGTTTCTGGCGAAACAACACCCCAAAAGTAGATTACACTGATTAATCATGGGAGTTTGAAGGGAGTTTGAAGGTTGCATGAAAGAAACTTGAGGTGAATCTGTTAACTAAATCTTTACCATGAGGGGGTGCTGTTTTACAATATTGACTGGTTTAAAGTATACATACTCAAAGATGGCTGGAAAAgcggatgaaaaaaaaaaaaacatgtgccAACCAACATCTTCCTAGTTGTGTGTGCTGTCTGGGTTAGAgcaaagtatatatatttttttgttgtccTTTCCATTACCTTTAACCTGACTAGTTTTTGCTTTACACAGATTTCTATGCAGGAATTCCTGCCTTTCCACACTGATTTAGTGTTTGCGTCGCTTCGCCCTGCAGCCTCTTGCTGCTCTGTGAGGTTCCTGACCACATGTTTTGAATACTTGTGTTTTCCATTGGGTTAGAAACCAGGCACCAGTCTGACTCATAGGCTAGTCCTGCTAAAGACTGACACATAAAAGACTATTTTTCtcactttcattttaatttgggTGCTGTTTTATAGAAATGAATATACAaacagtgtgtttttctgtatgtgactcatttttattttgaacttCAGCCTGTTATTCTGTTTAAAACCTCTTGGATCTTTGGAAAAAGTTGTACCTCTAAGCCGTGGAACGTAGGGACCTGCAGAGTTTAGTCCAAAGATCAATTTTTAAGGCAATAATCCTTCAAAATCCTTCATCATCAGCACACAAGCACCAACAGGTAGGaccaaacaggaagtaggaATACATGGCTGCACTTATTtctgaaaattttaaatttgctgCTCTTTTCTTTAAGAGTAAGGATGTAATGATCTTCAATGGGCTGATAGCCCTGGGGACAGTGGCTAGTCAAACTGCATACAACATATTTGCCTTTGAATGCCCATGTTCTACACAGAGAAATTACCTGTATGGGTTAGCTGCTATTGGCGTACCTGCCCTAGCTTTCTTTTTAATTGGAGTAATGCTCAATCGTAACACGTGGGACCTTGTTTCGGAATGTCGCATCAGAAAATGCCGGAAGCTGTCTGGGGCTGCTGCCTTTGCTCTGCTGGGTTCAATAGTGGGCCGTGCAGCAGTGGCTCCAGTAACCTGGTCTGTCATCTCACTCCTCAGAGGAGAGGCCTATGTTTGTGCGCTTAGTGAATTTGTGGACCCTCAGTCTTTGGAAAACTTTCCTTCCACTACCCAGAGCTCCGTTATCATGGCCCAGTTTCCATGTAAGGATGTGCCTGCAGAGCTGCTGCACTTTTGGAAATACATTGAACGCCGACTCAAGTATGAATCTCAGCTGTTGGGCTGGATGTTGGTGGCTATTGTCTCTTTCGCTGTGTTCCTGGTGATGTGTGGAAAGCGCTGTTGCTCTCCCTTGGGCTACCAGCAGGAGGCATACTGGACCACCTATCGGGCCAGTGAACACGCTCTTTTCCAACGCACTGCTGAGGTTCATGCCAAGCTCCATGCTGCCGAGAGCATCAGGACCTTCTTTGGGTTTGTAGCCCTTGAGGACCAAGAAAAGGGGCTTCTGACAGCATGTCAGGGGTCCAAACATGCAATTTCCAGTCTGGAATGGAACCAGATAACAGGAGTTTACTTATACAGAGAGAATGAAGGGACTCCCCTTTACAGTCGCCTCAATAAATGGGCCAAATACACAATTGGGAACAACACTGAGGCCATTGAGATGGAAATGTTAGGTTAAGGTGTGAATGATCACTGACAGTAATCAACTAACTTATGGTCATTTCTTGTGGATAATAGCTGTGTTCACTAATAAGATACAGCACTGTACTAAACtttcattctgttttgtttgtccCTGCTGTGCAAATCTGAGTAGTGTTTGctttcttcctttattttgCTTAAATGGGTCAGTATGAAAATTGATTACTTGAGATgcaaacatatattttaaaatcttttgtaGTTTGATGATGGGATGAATTGCGTGATGCAGTCAGTAATCAGAAATGATTAATACATAATGCATACTGAAGCAGCTTTTCTGCATTCCTAAAACATTTGTAAGACATAGAAAACCCTTTGAAATTATATGGgctatttgtatttttttttaaatatgtgctGATATGTATTGTATACTGTTCCcttttaattctttattaattagtaattagtaatgtCAACATTTGTTAAGATGCTTAGTTTTTGAGAATGTATGTTATCTCAGGTGGGCTGCATGGTggtacagtgggtagcattgctacctcacagctctagggtctAGTATtcattcctgagctcaggattcaCAATGGAGTTTCccgggtttcctcccaaaaaaacatgcagatggattggctatgctgaatgtatatttgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaatggtgctctgcaatggactCGCATCCCATCTGCAGTGAATTGTACTGCCATGCACCCAGTGTTGCCAGGATTggctccagattcaccacaAACCTAACCacgataaagcggttactgaatatgaatatgaatgttaTCTCAGGTAGGCCCTATGTTAGGACATGTTTGTGTGCTGTCCAGACAACTATTGTTACATATTGTACAATActtatgtaaaataatgtacaatattttacaatatattttattataaattttgtgcatttgttttttcttctatgAATATTATAAGAACGCTAAAATCCT

Function

GO: NA

KEGG:

id description
K19739 CALHM2; calcium homeostasis modulator protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53890 lncRNA upstream 20120 13312994 ~ 13313221 (+) True G45594
TU53888 lncRNA upstream 21261 13311677 ~ 13312080 (+) True G45592
TU53786 lncRNA upstream 237460 13095671 ~ 13095881 (+) True G45508
TU53744 lncRNA upstream 280812 13052240 ~ 13052529 (+) True G45473
TU53729 lncRNA upstream 315741 13011946 ~ 13017600 (+) True G45459
TU53962 lncRNA downstream 37465 13375799 ~ 13375999 (+) True G45640
TU54050 lncRNA downstream 183505 13521839 ~ 13599015 (+) True G45712
TU54051 lncRNA downstream 184572 13522906 ~ 13594825 (+) True G45713
XR_003404657.2 lncRNA downstream 305786 13644120 ~ 13645338 (+) True LOC113545747
XR_004577873.1 lncRNA downstream 550945 13889279 ~ 13889849 (+) True LOC117596881
XM_034301642.1 mRNA upstream 180 13329914 ~ 13333161 (+) True calhm1
XM_026944444.2 mRNA upstream 3848 13325893 ~ 13329493 (+) True calhm3
XM_034303028.1 mRNA upstream 15716 13314595 ~ 13317625 (+) True LOC113543512
XM_034302960.1 mRNA upstream 23072 13295814 ~ 13310269 (+) False chuk
XM_026932830.2 mRNA downstream 924 13339258 ~ 13346106 (+) False si:dkey-51a16.9
XM_026932821.2 mRNA downstream 931 13339265 ~ 13346106 (+) True si:dkey-51a16.9
XM_026943879.2 mRNA downstream 15235 13353569 ~ 13356432 (+) True atoh7
XM_026943888.2 mRNA downstream 15235 13353569 ~ 13356432 (+) False atoh7
XM_026943871.2 mRNA downstream 15235 13353569 ~ 13356432 (+) False atoh7
TU53738 other upstream 300093 13032279 ~ 13033248 (+) False si:ch211-223p8.8
XR_003404144.2 other upstream 333379 12982406 ~ 12999962 (+) False col17a1b
XR_004577802.1 other upstream 396539 12929559 ~ 12936802 (+) False spef1
XR_004577803.1 other upstream 396539 12929559 ~ 12936802 (+) False spef1
trnat-ugu other upstream 665455 12667814 ~ 12667886 (+) True trnat-ugu
TU54033 other downstream 159758 13498092 ~ 13501046 (+) False pcbd1
XR_003404567.2 other downstream 875068 14213402 ~ 14283168 (+) False slc24a3
XR_004577898.1 other downstream 1023033 14361367 ~ 14367446 (+) False cgas
TU55629 other downstream 2455094 15793428 ~ 15797204 (+) False eif4ebp2
XR_003404341.2 other downstream 2732380 16070714 ~ 16073067 (+) True cxcl18a.1

Expression Profile