RNA id: XM_026942251.2


Basic Information

Item Value
RNA id XM_026942251.2
length 1798
RNA type mRNA
GC content 0.47
exon number 3
gene id emx1
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 19357615 ~ 19362980 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCTGCAGCCTGTCTCGCCTCACTTCTTCTTCCTTAACGCCCAGACGCTGTTGCATTCATGGATGTACGCTGAACCGCTGTTTGCCTCCCTAAAGTTATCAGTCCGTGTTACTTTCCTGCAGCTTTTCTTTAACCATGTCTCTGTGAGGAAGGGCTGCTTTCTGACTGAGGTCACTGCAGAGGTCTCGAGAAGGAAGTAAAAGCGTGCTTCAGCTGCTGGACTTTGGCGGGACGGACAGGGACTATGTTCTCATCAGCAGGGAAGCGCGGGTTCACTATTGAGTCTTTGGTGGCGAAGGAGAGCCCATTAACGGGGGAAGACCCTATCCGCCCCACCGCGCTAAGCTACACAGCCCCCACAGACAGTTTTCTGAACGCTTATGCTAGCCCGGCAGGTCGCGCGCTTTATCCCAACCCCGAGCTCGTGTTCCCGGAGTCCGTGCAGCACGCGCCCATCAGCGTGCACCCGCACCAGCTCGGCGGCGCGCACCTCCAGCACCCGCACTTCTTCAGCACGCAACACCGCGAGCCTCTCAATTTCTACCCATGGGTCTTGCGAAACCGATTTTTTGGGCATCGGTTTCAAGggAACGACGTGTCACATGACTCGTTGTTGCTACACGGGCCTTTCTCGCGGAAGCCCAAGCGGATCCGGACAGCCTTTTCCCCCTCACAGCTCCTGCGCCTCGAGAGAGCCTTCGACAAGAACCACTATGTGGTGGGAGCAGAGCGCAAACAGCTCGCCAACAGCCTCAGCCTGTCCGAGACACAGGTGAAGGTGTGGTTTCAGAACCGCAGGACCAAGTACAAACGGCAGAAGCTGGAAGAAGAAGGACCAGAGAGTACACAAAAGAAGAAGGGTAATCACCACATCAACCGATGGAGAATTGCCACCAAACAGGCTGGATCTGAGGATATAGATGTCACTTCTGACGCCTAGAACCCATTTGTACCAGGCCGAAACTCACAGACAAGGCCATGAAAagctctatttatttatattttaaggaATGACTGTATGCGTCTAAACTTGGcggctatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagacagatagagagagagagaaagagagagattcagtCAGCATGTAGATTTCACTatgttctttttctctctttgtaaATGTTCTCAAGTATggttttgctctctttctccacaACACTGGCATCAGAAGACTAATTCTACCACTAAAGATAATTccattttccagcatgacacaACTGTCATGCCAGTGCGTTTAACCTACTAATGTCAATTACTAGCTTTGTACTTACAAGAACACTCCTTAATAATGGTTATAGAGATTAAACCTacttaaaacaaaattatattgCATCTCTATTTAAGGGAACAGTTCAGTTAATTTGAGACTTCCATTCCTGCTACCATTAgattttttccatatttttattaagGTTTTCCGGTAGCAGTTGACAGTGattgcaaaacaaacaaattgtgaTGCAAGGAATCATTTTACAGGCCAGTTTAGGCACGATCTACCCTCAGTGTAGGAGtaagtgcttgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtctgatgatCTGAATGCTTGGTTCTTGTTCAGTCACGGTAATGCAGGCTGCTGGATGCAGGTTCTCTGATTCATAAACAGAAACTACTGAATATTTGCCAACTGTCACATTAATGcctgtataatatacagtacatttaaaatataatttttcccccagaaagggaccataataataaatatgttttagaaACAGCT

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K09317 EMX; homeobox protein EMX

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58155 lncRNA downstream 105752 19251593 ~ 19251863 (-) True G49184
TU58066 lncRNA downstream 167000 19190327 ~ 19190615 (-) True G49108
TU58001 lncRNA downstream 304864 19052527 ~ 19052751 (-) True G49053
TU57913 lncRNA downstream 387819 18969591 ~ 18969796 (-) True G48975
TU57908 lncRNA downstream 400156 18957157 ~ 18957459 (-) True G48970
TU58193 lncRNA upstream 37684 19400664 ~ 19400863 (-) True G49215
TU58214 lncRNA upstream 64766 19427746 ~ 19428725 (-) True G49232
TU58488 lncRNA upstream 325612 19688592 ~ 19688877 (-) True G49481
TU58495 lncRNA upstream 351185 19714165 ~ 19715420 (-) True G49484
TU58497 lncRNA upstream 351438 19714418 ~ 19715420 (-) False G49484
XM_026937744.1 mRNA downstream 55073 19301205 ~ 19302542 (-) True LOC113540998
XM_026943469.2 mRNA downstream 62914 19287108 ~ 19294701 (-) True mavs
XM_026945113.2 mRNA downstream 71574 19283096 ~ 19286041 (-) True pank2
XM_026935385.2 mRNA downstream 75786 19261810 ~ 19281829 (-) False loxl3b
XM_026944643.2 mRNA upstream 11329 19374309 ~ 19375581 (-) False noto
XM_034303050.1 mRNA upstream 11329 19374309 ~ 19375581 (-) True noto
XM_034302619.1 mRNA upstream 251737 19614717 ~ 19667659 (-) True atrn
XM_034302620.1 mRNA upstream 251737 19614717 ~ 19667658 (-) False atrn
XM_034302993.1 mRNA upstream 306425 19669405 ~ 19700122 (-) False eif2ak3
TU58169 other downstream 37882 19316487 ~ 19319733 (-) True G49195
TU57664 other downstream 744214 18330368 ~ 18613401 (-) True lrmda
TU56951 other downstream 1696231 17657581 ~ 17661384 (-) False col13a1
XR_004577786.1 other downstream 1783193 17562332 ~ 17574422 (-) False LOC113538666
XR_004577787.1 other downstream 1783193 17562332 ~ 17574422 (-) False LOC113538666
XR_004577815.1 other upstream 272858 19635838 ~ 19667661 (-) False atrn
TU58944 other upstream 994954 20357934 ~ 20369097 (-) False gng2
TU58943 other upstream 995008 20357988 ~ 20369097 (-) False gng2
TU58946 other upstream 995008 20357988 ~ 20369429 (-) False gng2
TU59887 other upstream 2248794 21611774 ~ 21614267 (-) False plekhh2

Expression Profile