RNA id: XM_026942264.2


Basic Information

Item Value
RNA id XM_026942264.2
length 2699
RNA type mRNA
GC content 0.51
exon number 18
gene id sdccag8
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 20749672 ~ 20802069 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGAGGACGCAGTCTGTAAAGGACTACATATCCCAGTGACCCCCACGACGTTTACGGAAGTAAAGCTCTTCAGTTCGACCGTTACACCGGCTGTACGCTTTATCAACATATCAGCTGTATTAGAAAACAGAAACAGCTACAGGGAAAGAAACCGGTTGCCTTTTGCATGGCCTCTTgatataaatgctaaaaatgaaacCTTCACTGGAGTCCGACGAAGAGGAAGAGATAGGAACATATCAGAAGAAATTAAGAGAGAGGGCCAACCGCAGTATTCAGCAGCTAAGCAACATGCTGGTGAACCAGAGCTCTGATGCGGAGGCGCTGGAGCAGTCGAGCAGTCAGCACAGTCCTCCAGAGAGCTCCAGAGAACAAAGACAGCAGAGCGAAGCAGtcAGTCAGCTCCGTTCATTGCTTCAAAAACAACCTCAAGAAGTCAACTCTCCTTCCCCTTCGAAAAGGAAACCTGTTCCAAAGAGACAagcagatgaagatgatggaaGTTTACCTCCAGTCCAGGACCTGGTTCCCATCATTCACAACCAGTCTGAGTACATCCAGCACCTTGAGGCTGAGGTCAAGTTCTGCAAGGAAGAACTACTTGCGATGAAGCAGCGAGTCAGAGTAGTTGTTGTGGAGAATGAAAAACTACATGAGGAGCTCAAGGCAAAGATGGTGGAAGACACTCTGAAGGAATACAGTCTCCTGGATGGCACGGTAAATGCTGAAACTTCAGTAGATAAAATTACCTCAACACCCGCAGCAAAACCAAGACAGGATTTCATTCAAAAAACAGACGACAAGAAGTGGGAAAAAGAGCTGGAGCAGTTAAAATGTTTGTACCAAGCACAGACTGAGACGCTAGAAGCTCAGGTAGTTTCACTGAAGAAGGAATTGGTGAGTTGTCAGGCAGAATGTGAGGACCTGAAGGAGCGTCTGAGGCATAAGGAAGCAATGGCAAGTGTATCGGGGACTGGTCAGCGTGTCGGAGgtctgtgtgtgaaatgtgcgCAGCATGAGGCTGTACTGGCTGAAACACACTCCAACATTCACATCCAGGCCATCGAGCGACTCACCAAAGAGCGAGACGAGCTGATGACGGCGCTGTGCTCTCTGAGGGCCAGTCAGAGCGAGGCGCAGCAAAGGGAGTGGGCTGCTTATCATCAGGTCAAAcaggctgtggagatggcagaGGAGGCTAACCTGGAGAAGACCaagGCACTAGTACAGTGTGAGCACGTTTTCGCTGAGCTGGCTAGACAAAGGGAGAGACTGGAGAAGGAACTTGCTTTAGAGCAGGAGAAGATTGCACAGGCGAGGGGTGCTGCCCGCTccgagagcaagagagagaaagaggagctCGCCCAGATGGTGACCTCGCTGACATGCAGAGTGGCCGAGCTAGAGGGACTTTTGGatagaggagacagagagaggaattCCCTCAACACTCAGCTAGAGGAGGCCTTTAAGAAGCTCACCACTCAGGAGACGGACAACAGCAGGGTGTGTGGGGAGCTGCGCTACCAGCTGAGTCAGGCCCAGCTTAAGAGAGAAGAGGCTGAGAGGGAATTACGGGACTCTCGCTCTAAACTGGGCCGGCAGCTCGAGGTAGCACAACAGGAAGTGCAGAAGCTGGGTGCAGAGCTGAGTGGCAGCCAGCAGCGTTTGGAGGAGGCCCAGAGGGCAGAGGGCCGAGCTCGGACGGAGGCAGCCGGCCTGGCAGAGGGGCTGAACCGCGCCCAGCGCCAACTGCACCTCACCAGGAAGGAAAAGGAGGCACTGGAGCGCCGTTGTGCAGAGGACATGGCTGCTCTGACCTTCCAGGCTCAACGGCGCGAGCATGAGCTGACACAGACGCTCCAGCAAATGGAAACGCAGCACGAGAGGAATGTTGCAGACATGGATGCCTTGCTGAGCTTGCAGAATGGCCTCATAGGCAAGCTGAAGGATGAGTGTCATACTCTTTGTTCAAAAATGGAAGAGCTGACCCAGTCTAACAGGGCCGAGGTAGAACAGCTTTCTTTAGAGAAGGAGCACCTGCAGGAGAGCATGGAGAAGCTTCGAGGTCGCTGTCAGGAGATGGAGGAACAGTGTGTACAGCATGGGAGAATGCACCAGCGCATgaaacacagATTGCAGCAGCTGGACCAGCACTGTCAGTCCAGTGCTCAGCAGGTGATGGAGCTGCTCAACAGACAGAACCAGCTCGTACACGAGAGGCAGCTTCTCACTGAAGAGATGCACAACCTGCGTGTACAGTTACCAGCAGAGAGGAGAGAAACTATCGGAACAGTGTGAGGGCGGCTATTTCCTTCTCTCTCGATGGAGCTAATCCGATCACACCGACAGAGCGCCATCACCGCGGCTTTACTCAGAAATCATGAGGGATTTTGCTACAAGTAAGAAGTGGGTGAGTGGGTGCGAGTTTGTGCGTGTGATGGCTGCAGGGGGTCGTGTGACATCACAGTCCATActgcacacacagcagcagtgcTGGCTCTCGGTCactaacactctctctctctctctctctctctctcacacacacacacacacacatggatttGGTAACTTATGTTCATGATCACCGCTCAGGATTTCTTATTCcaacaaatgtatttaaaatgtagattttataatataaagatTGTAATGAACtaatttatttgctgtttttacacatttgatGTGTTTTTA

Function

GO: NA

KEGG:

id description
K16488 SDCCAG8; serologically defined colon cancer antigen 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59178 lncRNA downstream 194 20744419 ~ 20749478 (-) True G50002
TU59128 lncRNA downstream 226374 20523064 ~ 20523298 (-) True G49959
TU59126 lncRNA downstream 227608 20521694 ~ 20522064 (-) True G49957
TU59108 lncRNA downstream 243263 20505801 ~ 20506409 (-) True G49944
TU59107 lncRNA downstream 244702 20504237 ~ 20504970 (-) True G49943
TU59405 lncRNA upstream 249094 21051163 ~ 21051414 (-) True G50215
TU59425 lncRNA upstream 275379 21077448 ~ 21077702 (-) True G50235
TU59432 lncRNA upstream 281704 21083773 ~ 21084005 (-) True G50242
TU59450 lncRNA upstream 307899 21109968 ~ 21110177 (-) True G50260
TU59451 lncRNA upstream 309046 21111115 ~ 21111352 (-) True G50261
XM_034302990.1 mRNA downstream 120505 20619932 ~ 20629167 (-) False zbtb18
XM_026943039.2 mRNA downstream 122388 20619932 ~ 20627284 (-) False zbtb18
XM_026943029.2 mRNA downstream 123591 20619932 ~ 20626081 (-) True zbtb18
XM_034302973.1 mRNA downstream 175889 20554493 ~ 20573783 (-) False desi2
XM_034302972.1 mRNA downstream 184240 20554493 ~ 20565432 (-) False desi2
XM_034302630.1 mRNA upstream 53626 20855695 ~ 20865244 (-) False dync2li1
XM_026933990.2 mRNA upstream 53626 20855695 ~ 20865244 (-) True dync2li1
XM_026933981.2 mRNA upstream 55320 20857389 ~ 20865244 (-) False dync2li1
XM_026942334.2 mRNA upstream 66320 20868389 ~ 20877844 (-) True abcg5
XM_034302948.1 mRNA upstream 84529 20886598 ~ 20937637 (-) False lrpprc
TU58946 other downstream 380243 20357988 ~ 20369429 (-) False gng2
TU58944 other downstream 380575 20357934 ~ 20369097 (-) False gng2
TU58943 other downstream 380575 20357988 ~ 20369097 (-) False gng2
XR_004577815.1 other downstream 1082011 19635838 ~ 19667661 (-) False atrn
TU58169 other downstream 1429939 19316487 ~ 19319733 (-) True G49195
TU59887 other upstream 809705 21611774 ~ 21614267 (-) False plekhh2
trnai-uau other upstream 1094115 21896184 ~ 21896277 (-) True trnai-uau
TU60082 other upstream 1147786 21949855 ~ 21950189 (-) True G50837
TU60345 other upstream 1233216 22035285 ~ 22101383 (-) False LOC113540944
XR_003404067.2 other upstream 1972286 22774355 ~ 22788783 (-) False znf318

Expression Profile