RNA id: XM_026942324.2


Basic Information

Item Value
RNA id XM_026942324.2
length 3203
RNA type mRNA
GC content 0.47
exon number 13
gene id abcg8
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 20877886 ~ 20885712 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTGCTGTATATAGAGAGAGTTCTGAGAGTGCCTCCTCTCTAAAACACACTCTCCCAGCGGAAAGACAAGCAGCCACTTCTTCAGGTTTTCAACCCGGACCAAGGGGTCTCTGACCCCAATTCAGCACCTCTCCTGCTCCCAATAGCTAGACGCCATGACTGATGACACTGTGTTCGATTCAGAAAGCAGCTTCTGCTTCCCAGCACTGCCTGGAAACAATGAGGGAAGAGATATCAGGCTATTTTCCACAGGGGATGAGGACAGCAGTCTGTATTTTACCTACAGTGGGGGTTGCAATGAACTGGAGGTCAGAAATCTGCACTATGAGgtgGACACAGCAGCACAGATCCCCTGGTATGAGAAACTGTCCGAGCTGAAGATGCCCTGGGAGATGAGGGGTAACAAACAGACTGCTATCAAAGACCTGAACCTGAGAGTGCACAGCGGCCAGATGCTGGCTGTTATCGGCAGCTCAGGCTGTGGAAAGACCTCCCTGCTGGATATTATAACATGTCGAGATGAAGGAGGCACCAAGAAATCTGGAGAGGTACTCATCAATGGCAAGCCCTGCACACCCTCGCTAGTGAAGAAAAGCATTGCTCATGTCCGACAGGATGACCGCTTGTTACCTCATCTGACAGTACGAGAGACTCTCACCTTCGTGGCCCAGCTGCGCCTACCAACACATTTTACACAGGCACAGAGAGATCAAAGGGTGAATGATGTCATTGCTGAACTGAGGTTGAGACAGTGCGCTAACACACGAGTGGGAAACAACTATGTGCGGGGTGTATCTGGTGGCGAGAGGAGGAGGGTCAGCATTGCTGTTCAGTTACTATGGAACCCAGGTATTCTTATCCTGGATGAGCCTACTTCAGGTCTAGACAGCTTTACTGCTCACAACCTGGTTTTCACCTTGTCTCGTTTGGCCCGAGGGAACCGTCTGGTCCTGCTCTCAGTGCACCAGCCACGTTCAGACATCTTCCAGCTCTTTGACCTGGTGGTGTTGCTCTCCTCTGGCTCAGCTGTGTACTGCGGCCCTGCCAAAGACATGGTGCCCTACTTCACATCTCTGGGGCATCCATGTCCACGCTACTGCAATCCCTCTGATTTCTACGTGGACTTGATCAGCATTGACCGCCGCAGCTCAGAAAAGGAAGCTGAGTGTCTGGAGAGAACAAGGGTCCTGGCAGCCCAGTTTGCTGAGAAGGTGAAGAACACTGATGACTTCATGTGGAAGTCTGAGGAGCACAACGTTCCAGTGCTAGATAATAATATCCAAAGCGACATCCCTTCTACACCAAACGCCGAAACCCGCATCACGGTGTCACAAAGGAAGGACCATCGACCAGGCCGGCTGCACCAGTTCTCCGTACTGATTAGGCGGCAGGTATTTAATGATTTCCGTGACCTGGTGACACTGTTGGTGCATGGCTTAGAGGCCCTGCTAATGTCACTGCTCGTGGGCTTCCTGTACTTCGGGGCAGGTGAGGAGAAGCTGCCATTGCAGGACACTGTGGCTCTGCTCTACATGATCGGAGCTCTCACACCATTTGCTGTGGTACTGGATGTCATAGCCAAGTGTCATTCAGAGAGAGCCATGCTGTATCATGAACTGGAAGATGGAATGTACTCGGTCACCCCCTATTTTTTTGCCAAGgtcctGGGTGAGTTACCAGAGCACTGTGTTTTCACCCTGGTGTACAGCCTGCCTATCTATTGGCTAGCCGGCCTGAATGACTCCCCAGACCGCTTCCTGCTCAACTTCATGCTGGCGTGGTTGATGGTGTACTGCAGCCGCTCCATGGCTTTGTTCACAGCAGCCGTGCTACCCACCCTCCAGACCTCTTCCTTCATGGGAAACTCccttttcactgttttctaTCTGACCGGCGGCTTTGTTATCAGCCTGGACAACATGTGGCTAGTCGCTTCCTGGTTTTCCTATATTTCTTTTATGCGCTGGGGTTTTGATGGGATGCTGCAGGTTCAGTTCCGTGGCCTCAAATATTCAGTCAGCCtgggaaacctgaccatcaatGTAGATGGCATTAAAGTGGTGGAGGTGATGCATATGAACCAGTTCCCACTCTACTCCTCTTATCTAGTGCTAATCGCTGTAGTGTTGGTCTTTATGTTGCTCTACTATCTGTCACTAAAGTTCATTAAGCAGAAGTCCAGTCAGGATTGGTGAAGAAAAAGCTACAGTCAATCTCTTTTGGACGAACTTTACCCCCTACACATGAAGCCAGGCCACTGCAGGAAAATGGCAGCACCAACATGTTCTCAGTCCACACTGAGGTGATATGGGAGAACTCTGGAGAAACGTGTTCATGTGCTGCATATACTAACAAACTCAAGTTTGTCAGTGCTGTCATCATTGGACATTTAACAATCTGACAATTTTCTGCTTATGATGGACACAAAGATCAAAATTGTATATTTAGAAAGTTAttgtaagttgctttgtgacatatAAGAGCAACTTTTTTTGAATAATAGCATTATAGGTTTATCCTTAGAAAAATGCCACCATGTCAAAATCATTGGAAGTCTTGTCAGCTCCATGTTTGTCCCATTTATTCACTAATATCAGGGCCATCAGAGAGTTCCCCAAATTCCCATTTGGAGGTTGACATGAACAGTTTTTACTTCTACACAAGCCTATATGACGTCAAAAATCAAAAGGGGCGAGAAGTGACATGTCAGGTGTGTGGCAGGAGACATTGTTATGAACAAAATGGTGGCTGGTTGAGCAGATTGTATTAAGTGCTCATTTGCCAACCATGTTATGCATTTACCAAGGGCTAGTTAGAGAATGGAGAGGAGCGTAAGATGTCAAATCCTAGGTATTTTGGCAAACATACACAAAGCAAAAAGTGAGACAGATATTTCGAAAGTGATATACCATTAACAACATAAATAATCACAAAGTGATTTATGACTAAGGTGTGAAGTTATCCTTATGATCTCAAGAAGTGAGTAGTGGAAGAGTACTACCGAAGTCTCTGACCTCCAAGAGATTGTATACCAAACTTCAAATGAGCCAATAAAGCATTGCAACAAGCTTTAATATGACATCTGGGATTCTGCATAAGGGAATGGTGAGAGGGAGAGCTGACAAAGGTAACAATATTGATAACAATATTGAAACACAGCTctcattttctacaacagataatgttcacatgtGAGTGTTTGA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K05684 ABCG8; ATP-binding cassette, subfamily G (WHITE), member 8 (sterolin 2)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59007 lncRNA upstream 161589 20619938 ~ 20716297 (+) True G49857
TU59015 lncRNA upstream 288656 20585604 ~ 20589230 (+) True G49864
TU59014 lncRNA upstream 292386 20580801 ~ 20585500 (+) True G49863
TU59001 lncRNA upstream 353837 20523816 ~ 20524049 (+) True G49853
TU58889 lncRNA upstream 485299 20392367 ~ 20392587 (+) False pprc1
TU59323 lncRNA downstream 64858 20950570 ~ 20950991 (+) True G50140
TU59334 lncRNA downstream 77550 20963262 ~ 21043534 (+) True G50145
TU59354 lncRNA downstream 232350 21118062 ~ 21118862 (+) False camkmt
TU59475 lncRNA downstream 293894 21179606 ~ 21179811 (+) True G50284
TU59491 lncRNA downstream 312565 21198277 ~ 21198508 (+) True G50297
XM_026938555.2 mRNA upstream 22184 20802370 ~ 20855702 (+) False cep170aa
XM_026938565.2 mRNA upstream 22184 20802370 ~ 20855702 (+) False cep170aa
XM_026938591.2 mRNA upstream 22184 20802370 ~ 20855702 (+) False cep170aa
XM_026938519.2 mRNA upstream 22184 20802370 ~ 20855702 (+) False cep170aa
XM_026938511.2 mRNA upstream 22184 20802371 ~ 20855702 (+) True cep170aa
XM_034301821.1 mRNA downstream 101177 20986889 ~ 20996378 (+) True ppm1ba
XM_026939903.2 mRNA downstream 116657 21002369 ~ 21010590 (+) True slc3a1
XM_026936906.2 mRNA downstream 140021 21025733 ~ 21118964 (+) True camkmt
XM_026936915.2 mRNA downstream 202229 21087941 ~ 21118964 (+) False camkmt
XM_026943202.2 mRNA downstream 295223 21180935 ~ 21183818 (+) True six3a
TU59013 other upstream 302407 20574973 ~ 20575479 (+) True G49862
XR_004577568.1 other upstream 1521788 19341350 ~ 19356098 (+) False sfxn5a
trnae-cuc_10 other downstream 119738 21005450 ~ 21005519 (+) True trnae-cuc_10
TU60121 other downstream 1135695 22021407 ~ 22023811 (+) True wu:fj16a03
TU60615 other downstream 1898616 22784328 ~ 22786505 (+) True G51271
XR_003404579.1 other downstream 2228473 23114185 ~ 23115039 (+) True LOC113545030
TU60962 other downstream 2568716 23454428 ~ 23455549 (+) True G51562

Expression Profile