RNA id: XR_004577889.1


Basic Information

Item Value
RNA id XR_004577889.1
length 2114
RNA type misc_RNA
GC content 0.45
exon number 18
gene id LOC113543929
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 10594574 ~ 10608704 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCCTTCATGTGTTTACACATCAGTTCATCTACCTGAACAAACAAAACTCACAGGGAGCTGgcatttttcttaaattttttttcttacttactATTATTGGTTTGCTTGAAAAGGTTGTGGATATCTACTGACACAGTGAGTTCTTTTCTGAGATAAAGTTAATCTGTACCAACATGGACCACTCAAGTGAGAAGAATAAATCAGCCACCAAGAAAAAAGTAGCTGTAGTAGGAGGCGGCTTGGTTGGTGGCTTAAATGCATGCTTCTTTGCAAAAAGAGGATTTGAGGTTGCAGTCTTTGAATCTCGAGAAGATATTCGCCGTGCCAAAACAGTAAAGGGCAGGAGCATAAATCTAGCCCTCTCCCATAGGGGACGCCAAGCTTTAAAACATGTTGGAATGGAAGACAAGATTGTTTCCAAGGCCATCCCAATGCATGCTCGTATGATCCACAGTGTGAATGGAAAACGTTCTCCCATACCATATGGAAAGAAAGGTCAGTACATCCTTTCTGTAGGCAGAGCCAACCTCAATAAAGAGCTGCTAACAGCGTCTGAAGCATATCCAAACACACAATTGAACTTTAACCATAAACTGCTTGACTGGAATCCAGAAACAGGGACCATGACCTTTCTTGGGCCTGATGGTAATGAAAAGGAGATCCAGGCAGATCTCATAGTGGGCTGCGACGGTGCCTTCTCTGCCACTAGGAAGCAGTTTTTACGCCGCAGTCGCTTTAATTACAGCCAGACCTACATCCCCCATGGATACCTTGAGCTCACTATGCCTCCAAAAAATGGTGATTTTGCAATGGAGCCCAATTTTCTTCATATCTGGCCCAGGAACACATTTATGATGATTGCTCTCCCGAACATGGACAAGACCTTCACCTGTACACTCTTCATGCCATTTGAGGAATTTGAGAAGATTACCACAGGCGATGAGCTGATGAACTTCTTTCAGAAATACTTCCCAGATTCCATCCCACTCTTAGGAGTtgaagCTCTAAAGAGGGACTTTTTCCAACTGCCTGCCCAGGCCATGGTGTCAGTGAAGTGCTCTCCGTATCATCTGAACGACAAATGTGTCTTAATGGGGgatgctgctcatgctgtggtGCCATTTTATGGCCAGGGCATGAATGCAGGCTTTGAGGACTGCCTCGTTTTTGATGAGATTATGGATCAGTTTAATGAAGAATTCTCTGCTGTTCTCCCGGAGTTCACACGAATTCGTGTACCTGATGATCACGCCATAGCTGATTTGGCTATGTACAATTATATagagATGCGAGCGCATGTGAACTCCAAGTACTTTCTGTTCCGTAAATATCTGGACAATGCACTCCATTATATCATGCCGAGAACAATAATCCCATTGTACACAATGGTCACTTTTACCCGAACACGCTATCATGAAGCAGTGATCCGCTGGCAATGGCAGAACAAGGTGATTACTCGGGGCCTGTTGCTTTGGGGGACATTGTCTGTAGTGGGACTGACTTATCTGCTAATCAGATACATTCCCAAAAAGCCCAGCATTACTGTGGAGCAGCTATGGAGCAGACTTCTCACCCTTGTCTGGTTCCAAAAATATTTCATTGTAGGAAAATGGAAGGTCATTTCATGGTGTCTGCACATGACTCGGGATCATTGAACTGAGAATCCAGCAAATGGAAGTGGAAAGAAGcttatatatGCCTGTCATCACGGCTCTGTGACATCACGATGGGACGTACTGGTTGGCTGGAGCAGGTCAGGGGGTGGTCCTTAATGCCACACTGCAGGTCATGATTTCTTACTCAAAAGTATAGGTCTAAAGTCTAGTGTCTTCACCTTCCTGCTCATGAAGCCATATATAATTGGGTTATAAGCTGTGCTGGACTTGGCGAAGACTGAGGGGATGATGGCAACAGTGGGCGAGACGACACTCTGCTTGCCAAAAGCTACCAGCATGGAGACCACGGCATAGGGTGTCCAGCACAGCAGATAACAGAAAATCATCAACAGGAACATGGTGGCCAACTTCTTCTCATAGCGTAGGACCTTAATGATTTGCAATGTCTGCAGATCCTCAATGGAGCGCAACTACAGTAATAaatggagagaaaggga

Function

GO:

id name namespace
GO:0019805 quinolinate biosynthetic process biological_process
GO:0001878 response to yeast biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0009435 NAD biosynthetic process biological_process
GO:0006569 tryptophan catabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005741 mitochondrial outer membrane cellular_component
GO:0004502 kynurenine 3-monooxygenase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52057 lncRNA upstream 34051 10558629 ~ 10560523 (+) True G44044
TU52021 lncRNA upstream 77688 10514337 ~ 10516886 (+) True G44016
XR_004577629.1 lncRNA upstream 271310 10318421 ~ 10323264 (+) True LOC117596582
XR_004577630.1 lncRNA upstream 271347 10318421 ~ 10323227 (+) False LOC117596582
TU51883 lncRNA upstream 347539 10242057 ~ 10247035 (+) True G43905
TU52079 lncRNA downstream 2775 10611479 ~ 10611806 (+) True G44059
TU52080 lncRNA downstream 6442 10615146 ~ 10615586 (+) True G44060
TU52228 lncRNA downstream 366138 10974842 ~ 10978237 (+) True G44182
TU52258 lncRNA downstream 394456 11003160 ~ 11004990 (+) True G44211
TU52269 lncRNA downstream 444871 11053575 ~ 11053853 (+) True G44222
XM_034302755.1 mRNA upstream 6459 10573152 ~ 10588115 (+) True dna2
XM_026936631.2 mRNA upstream 6459 10573152 ~ 10588115 (+) False dna2
XM_026937942.1 mRNA upstream 38581 10555580 ~ 10555993 (+) False sprn
XM_026932587.2 mRNA upstream 44383 10542610 ~ 10550191 (+) True si:dkey-191g9.7
XM_026933156.2 mRNA upstream 54534 10528377 ~ 10540040 (+) True si:dkey-191g9.5
XM_034302893.1 mRNA downstream 75796 10684500 ~ 10723757 (+) True LOC113542239
XM_026943433.2 mRNA downstream 174402 10783106 ~ 10785648 (+) True nanp
XM_034302559.1 mRNA downstream 193463 10802167 ~ 10816200 (+) True LOC113538283
XM_026932039.2 mRNA downstream 208138 10816842 ~ 10824656 (+) True LOC113537521
XM_026940617.2 mRNA downstream 216518 10825222 ~ 10844291 (+) True tm9sf3
TU52056 other upstream 36279 10552259 ~ 10558295 (+) True sprn
trnak-cuu other upstream 2124878 8469624 ~ 8469696 (+) False trnak-cuu
TU50445 other upstream 2128262 8465747 ~ 8466312 (+) True G42685
XR_003404394.2 other upstream 2928541 7649198 ~ 7666033 (+) False naa15b
TU49753 other upstream 3373551 7203950 ~ 7221023 (+) True G42075
XR_004577793.1 other downstream 490889 11099593 ~ 11171114 (+) False dntt
trnag-ccc other downstream 982631 11591335 ~ 11591405 (+) True trnag-ccc
XR_003404598.2 other downstream 1074160 11682864 ~ 11726772 (+) False LOC113545306
trnag-gcc other downstream 1098231 11706935 ~ 11707005 (+) True trnag-gcc
XR_004577785.1 other downstream 1137045 11745749 ~ 11766414 (+) False LOC113544122

Expression Profile