RNA id: XM_026942516.2


Basic Information

Item Value
RNA id XM_026942516.2
length 3345
RNA type mRNA
GC content 0.43
exon number 7
gene id ogfrl1
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 14630895 ~ 14642737 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTAAGTGTTTAATACGTTATGATTTTCCTAAAGGAATCAGAAAACCAGTTAATCAGTAGTATAGGTAACTGTCctacatggattttttttcctataacaacaggATATGACTGGTTTTACATGAAGTGCTTGTGACAGTCGAGGTTTCCAGGGATCGACAGGGTTCAGTGAAAGTTTAATGAGGAACTAACACATCGATGGGCGGTGATCTTCTCTAACGGCACAGTGATGCTGCTCACCGCCACCATTGCGCTTGTGTGCACGTCGCTTGGGAAGTCCTGCGTCCTGTCCAATAGAAATAATGCGTGAGTATCGCACGGCTTGTTTATAAAGCGCAGTCTGCTAGCAGCGGGAGGAATGTAGGTAGAGGCGCGGGAGGCAGACTGAAGGCGGAGGTGGCGGAGGAGGACAGAAGCGCGGAGAGGTGGCGTCAATGGGAAATCTGATGGGCGCTCTGAGGTACAAGGAGCCGAGCACCGTGGAGGAATGCGACTCGACGTGGGAGACGGACTCGGAGAGCGATCAGTATCCGGGAGGAGAGCAGGACAGCGGGCTGTCCGAGTCCATCGCGGCTCCAGAGTCAGGGCAGTGTGGAGAGGACCGAGACGGCTTTCCTCAGTTTAATGACATGGCTGAGTCATCCACTAAGATGAAAAGAAGCTTTTATGCTGCCAAGGACCTGTACAAGTACCGCCATAGTTATCCGAATTACAAGGAGCCTCGGCTGAGAAATGAGTACCGCAATCTGAGATTCTACCTGAATAAGATTCCTCTGGTCCCAGAtgGAATCTATGTTGAAGAGATCCTCACCAAATGGAAGGGTGACTACGACAAACTTGAGCACaatcacacatatatacaatgGCTTTTCCCTCTCAGGGAACAAGGCCTCAATTTCTATGCCCATGAACTCACTCAGGATGAGATTAAGGAATTCCAGAACACTCAAGAAGCCAAGCGGCGCTTCGTGCTGGCGTACGCTATCATGTTGGACTTCTTTGGGATCAAGCTCCTAGATAAGAATGGAAACGTAGCCCGTGCTGAAAACTGGAAAGATCGTTTCCAGCACCTGAATGAgtCTCAGCACAACTATCTGCGGATCACACGCATCCTGAAGAGCCTGGGCGAGCTGGGCTTCGAGAGCTACAAGCTGCCTCTGGTGCACCTGCTGCTGGAGGAGGCTCTGGTGCAGGGCACACTGGCTAACATGCGCCACAGTGCGCTCGAGTACTTTGTCTACACACTGCGAAAGCACAGTGAGAGACGTGCACTGCTGCGCTTCGCCCAGCGCCACTACCAACCTCCTGAGAACTTCATCTGGGGGCCTCCAAAGAGGAGAGGCTCCCCTGGAACAAGGGCGAGCAGAATGGAGTCCCCCCTGGACAGGAGTGTAAGAATAACTAGAGCTCTAAAGCAGGGGAGTACAAACAGCCCTGATGAAGAGATAGAAGGGGTGGACAGGAGGGAAGTAGGGGAGTGGAAAACAACAAAGTTATCTAGGAGCCATCAGCAGGGTAGGGGAGACACAGAGGAATACATTGAAACTGTACCTCTTTGAGAATTTTGGAATGGGGGATTGAGAAAATGAGCCTGATATTAGGACTGACAGTGTTGGGGATTAGTAATGGGTGTGGCTCAAAGCAATATTATTCCTTGTCTTGGCCTTCAGTGAATAGCAATGAGATATTTGTTACTCTTTGGCttttttgtaaatctgtaaCTAAATAccaattttcattttgtttactttgAGGCTTAAAATATCAGCTGATGATTTTCTACTCTACTGCTAACCCTGCCTCAATCTGTTACACTTCTTGAACAATCTTTAGCACACAGAAGTGTAGATGTGAATTATTACCTAACTTGATTGTGAGTGTGTTGCACCTTTGCCTATCCAGTCTTCCTCTGTGAAATATTGTGGAGCTTAGATAGACTCCAGGCTTTAACTGAGCCTTTTGAGCCTTAGTCTTAGAGCTGAGTGAGGTTTATTTGTATAGAAACATAACTATGACTATCAAAGTTAAAATGGCTAGAATGTGTTAACACAATGCATTTTATAACATCacccttttaaaaaaatgcttttaatgcATTTTCCTAGTGTTATCATTTGCCTTGTTATAATTGAATACTGATGtacaccattaaaaaaaaatagaaatagagaCTACTGGACGTCagtgtataattataattaccTTGGGAGAAAATTGAGGTAAATTGAGGAAAATTGGAAAATtcaaaaagataaataataaaaagagaaagagcacTGTGCAGAAGTGTGTGAGGAAAGCCGGAGATCATTAAAGAGAAACTTAACACACTTAGTACAGATTGTGCCAGCTGCATTTTGAACACCTACCCTGCACTCAGTGTCTGTGACACACAGAACAGTGCGTTTTGGTTCCAGCCAATTGTTGAAAGATTCTTTAAACACAGTCTTCTAGTTGCTGATCTAGAAAAGCATGACGTTGAAATGTGgaaattatgaaataattacAACCAGCTACAAAAATGTGTCtaattgtgattatttttttttattcatttgacagCCCTAGTAGGAACATATCACTTTAATGAGtagcatattttaaatatcactATTTGTTAGCACTATTATGTGAGTGTAATCCAGAGTTTGTGCAGTGTCTTATATCAAGTGCCTCAATTTTTAGTCAGTGTGTGGCTGAGTTAGCCCACATCAGTAAGGACAATCAGAAATGAGGTCACTGACCTCTGAGAGAGAAATAATTGTGCTTTGATATGTGAAATGTTGAATATATGAATTCTCTTATCTAACTACACATACAAAAACTGTGTTGTGCTCCAGTGTATACTCACCAGATTATGGGCTAACATGaaagtatgtgcatgtgtgtatgtttgaatTTCTGCCTGCACTTTCTATTTCTATGTTTCTATGACAAGCACACAGAGGAGTAAGGAAGGATTACAGTTTGTACACCCCTTTCTTTCTCACCCtcttctctctttgtgtgtgtatgcacgtcTTGTTGGTACATACTTCCTAGTGCATCCTCTCACACAGGTAGCGGCGAGAACATAGCCATCTGTTTCCTGGACTCCCTCTGCAGTAACTCAAATTCAAAAGGACTGCAGCATGGGCAGAGCAAATACTTCTCAACGCAACCCTAGgattcttatttttaatgttttctgtaaagttACTTATGTGGATTCAGTACTGACATATCTCTCTTTATGTGAGGcactataaatgtgttttataatgttttgtacaagaaaatgtgacattttggAGGGCTCTTCTTGTGAACTATTGTATTAAACTTGCAGCTATTTCTGGAAATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55026 lncRNA downstream 4925 14617653 ~ 14625970 (-) True G46576
TU55042 lncRNA downstream 16131 14614516 ~ 14614764 (-) True G46591
TU55041 lncRNA downstream 17077 14613541 ~ 14613818 (-) True G46590
TU54707 lncRNA downstream 339262 14289556 ~ 14291633 (-) True G46304
TU54560 lncRNA downstream 446809 14183768 ~ 14184086 (-) True G46183
TU55183 lncRNA upstream 294361 14937096 ~ 14937309 (-) True G46680
TU55218 lncRNA upstream 369512 15012247 ~ 15012450 (-) True G46711
TU55261 lncRNA upstream 418121 15060856 ~ 15061173 (-) True G46750
TU55267 lncRNA upstream 421783 15064518 ~ 15065307 (-) False G46754
TU55265 lncRNA upstream 422299 15065034 ~ 15065999 (-) True G46754
XM_026932173.2 mRNA downstream 35809 14520938 ~ 14595086 (-) True LOC113537600
XM_034302938.1 mRNA downstream 116012 14388987 ~ 14514883 (-) False kcnq5a
XM_026936856.2 mRNA upstream 30346 14673081 ~ 14778488 (-) False smap1
XM_026936847.2 mRNA upstream 30346 14673081 ~ 14778488 (-) False smap1
XM_026936837.2 mRNA upstream 30346 14673081 ~ 14778488 (-) False smap1
XM_026936828.2 mRNA upstream 30346 14673081 ~ 14778488 (-) True smap1
XM_026934198.2 mRNA upstream 137121 14779856 ~ 14784753 (-) True sdhaf4
XR_004577668.1 other downstream 438652 14181891 ~ 14192243 (-) True ccdc85a
XR_004577863.1 other downstream 1599699 13005486 ~ 13031196 (-) False slka
trnal-cag other downstream 1896613 12734200 ~ 12734282 (-) True trnal-cag
trnae-cuc_9 other downstream 1962004 12668820 ~ 12668891 (-) True trnae-cuc_9
trnak-cuu_2 other downstream 1962330 12668493 ~ 12668565 (-) True trnak-cuu_2
TU55100 other upstream 137130 14779865 ~ 14784734 (-) False sdhaf4
TU55523 other upstream 771206 15413941 ~ 15416483 (-) False c3h10orf53
XR_004577773.1 other upstream 2336396 16979131 ~ 16982729 (-) False morn4
XR_004577771.1 other upstream 2336396 16979131 ~ 16982729 (-) False morn4
XR_004577772.1 other upstream 2336396 16979131 ~ 16982729 (-) False morn4

Expression Profile