RNA id: XM_034302977.1


Basic Information

Item Value
RNA id XM_034302977.1
length 2722
RNA type mRNA
GC content 0.41
exon number 8
gene id slc39a8
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 20507217 ~ 20515636 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACAGCGAGGCGAATCCGCTAAGGAATGCTGAGTTGTGCAGTGTTTGTCTGCTTCAGATCTCCTGGATGCCTTTGGGCTCTCTAATGCATCTGAACTGACTGTAGATCAGCTAGAGCTCATATGCCCAGCTGTTCTTACCCAGGTTCTTCTCCCTTCCTGCCCTTACATGACCCCCTCGACCATAACCATTGAGCCTCAAGttTGGGGTTATAGTTTCTTGGCTGTGACAATAATTAACTTGGCTTCTCTACTGGGGTTACTCTTGGTTCCCTTCACTAAGAAATCTTACTTCCCAAAAGTGTTGACCTACTTCATTGGGGTGGCCATAGGAACATTATTCTCCAATGCTGTAATGCAACTTATCCCAGAGGCTCTTGGATTTGACCCAAAAGTTGATAACTATGTGTCAAATGCGATTGGGATTTTTGGAGGGTTCTACCTCCTGTACTTTACGGAAAGAGTCTTAAAAATAGCACTGAAAGCAGATCCAGAGCATTGCCACAGCCACTTCCCTTCACTACAGACTAATGATGTAACCATCACCAGCTTCAGCAATGACATTATCATAAACAACATGACAAGTGACGTCATCACAAATAACGCCAACCATGAGGTCCTACCAAACAGCCCCAGTGAGAAACCAAGCCAGCCAACCATGAACCCAGCCAGTGAACAGGAGACATGCATGCTAGTGGGATGTCGCTGGCTGCGAGGGGAAAAAGTGTCAAACATAAAAACGGTGGCTTGGATGATCACTCTGAGTGATGGATTGCATAATTTTATAGATGGACTGGCCATTGGAGCCTCCTTCACTGTTTCTCTTCTCACCGGCTTCAGTACCTCTATAGCCATTGTCTGTGAGGAGTTTCCTCATGAGCTAGGTGACTTTGTGATTCTCTTGAGCTCTGGTATGAGTGTCCCTCAGGCAGTGTTTTTTAACCTGCTCTCTGCTGTGTGCTGTTATCTCGGCTTGGTGCTGGGTATCTTGCTGGGCAGCAGCTTCGCTCCAAATGCCATCTTTGCTATTGCTGGTGGAATGTTTCTTTACATCTCTCTGGCAGACATGTTTCCAGAgatgaatgaaataatgaacGCACATGCCAGAGGCCGCAGAGGGAAGATCTTATTCTTTCTGTTCCAAAATGGTGGCCTGCTAACCGGCTTTTCCATTATCCTCCTCATCACCATGTTTGCTGGAGACATCAATCTGGGATAAAGGGAACAATGAATATGAGATTAGTCCACACAACCAGAGACCAAATGGTCGATACCACAAGCGAAAATGAGACAATGTAAAGATCTATCATTTTAAAACTCTTGACTTGGACTCTATTCCTACTGTTTAACACAATAATGTATATCATGTAACATTGTAGTAatagaaaaaaaggaattataaattattttttgtaattaatctgTGTATAGGGGCATTGGACACAAAGACGCTCCAATTTACTGTTTGTCTCCAAGCCTCTAGAAGGTTTCCTTCGCTAGGTTTTCAGACTTGACTTGTGGGcacataaacaatataaactACTTTGGCAACTCTCTCAGGCAGTTATTTCCAGTGATACAAGAGAGTAGGCCAGAGAGTACAGACAGGACACTGCTTTTAAATGAATGGGGCAGTATATACATTTCAACATGGCAACTGTATTCAGTCCTTATTGGTTTGGTAAAGATGTTAGCAAAAAATCATATTCTTACTCTGATACATGTCCAGTtatacagtgctgtgaaaaaagtatttgccccccgATTTCCTCTATTCCtctattttatttgctttttttccctacaCTAAAAGGTTTTAGATCCTCATACAAAATaaggaaacacaaaacataatttttaattgatcattttatttactggaGGAAAAAGGTTATGGAAGACCTATATCACCCATGTGAAACAAATTGTCCCCCTGAACTTAATAACTGGTTGTGTCACCTTTGACAGCAACATCTCTAACCATATGCTTCTCATAATTGGAGATCAGTCTCTGACATCGCTGtggaggaattttggcccactcttctttgcagaattgctttaattcaGTCCTGTTGTTGGGCTTTCTAGCATTAACTGCCTGTTTAAGGTCCTGCTACAGCATTTCAATGGGGTTGAAGTCAGTACTTTGACTAggtcactccaaaatcttgttTCTTTTGGACCATTCAGGGTTGGACTTGTGCTTTGGActgttgtcttgctgcataatgCAATTGTGCTTAAGCTTCAGGACTGATGATGAACGGACATTGTCCTTAAAGATTTTCTTCCGGCCACTTTTGGGAAGATTAACCACTGTTCAGAATTTCTCCTTTTGGAGATAATGGCACTCACTGTGGTTTACTGGAGTCCCAGAGCCTTAGAAATGTCTTTTTGTAACTCTTTCCAGACTgatatatttcaataaatttCTTTCTCAGCTCTTCTAGAATTTCTTTTGATTGCAACATAGTGGGCTGCTTGTTGAGAGCTTGTAGTCTGCTTCACATTGCTGGGAAGGTTCTGTTTAAGGGATGCTTAGACTCAACAGGGCTGGCAGTAATCTAGCTTGAGTGAGTCTAATCTAATTCAACCCAATTATCAATCAAATATTGTTAATCGTTTGATTGAGTAACTAATGGGGCaattacattttcacacaaGGCCATTTGGTGTTGGGTAACTGTatttttccttcaataaatgatcatttaaagactg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58889 lncRNA upstream 115224 20392367 ~ 20392587 (+) False pprc1
TU58738 lncRNA upstream 316667 20155901 ~ 20191144 (+) True G49643
TU58721 lncRNA upstream 324618 20121048 ~ 20183193 (+) True G49630
TU58541 lncRNA upstream 508125 19972587 ~ 19999686 (+) True G49518
TU58539 lncRNA upstream 564736 19933042 ~ 19943075 (+) True G49517
TU59001 lncRNA downstream 8180 20523816 ~ 20524049 (+) True G49853
TU59014 lncRNA downstream 65165 20580801 ~ 20585500 (+) True G49863
TU59015 lncRNA downstream 69968 20585604 ~ 20589230 (+) True G49864
TU59007 lncRNA downstream 104302 20619938 ~ 20716297 (+) True G49857
TU59323 lncRNA downstream 434934 20950570 ~ 20950991 (+) True G50140
XM_026939396.2 mRNA upstream 1380 20497593 ~ 20506431 (+) True manba
XM_026939417.2 mRNA upstream 11096 20485920 ~ 20496715 (+) True ube2d3
XM_026939407.2 mRNA upstream 11096 20485922 ~ 20496715 (+) False ube2d3
XM_026939425.2 mRNA upstream 11096 20485926 ~ 20496715 (+) False ube2d3
XM_026942449.2 mRNA upstream 29065 20468623 ~ 20478746 (+) True zmp:0000000662
XM_026942556.2 mRNA downstream 1872 20517508 ~ 20521274 (+) False LOC113543984
XM_026942568.2 mRNA downstream 1900 20517536 ~ 20519608 (+) False LOC113543984
XM_026942548.2 mRNA downstream 1913 20517549 ~ 20521274 (+) False LOC113543984
XM_034302980.1 mRNA downstream 1913 20517549 ~ 20521274 (+) False LOC113543984
XM_034302981.1 mRNA downstream 1913 20517549 ~ 20521274 (+) False LOC113543984
XR_003403773.2 other upstream 1151713 19341350 ~ 19356098 (+) True sfxn5a
TU59013 other downstream 59337 20574973 ~ 20575479 (+) True G49862
trnae-cuc_10 other downstream 489814 21005450 ~ 21005519 (+) True trnae-cuc_10
TU60121 other downstream 1505771 22021407 ~ 22023811 (+) True wu:fj16a03
TU60615 other downstream 2268692 22784328 ~ 22786505 (+) True G51271
XR_003404579.1 other downstream 2598549 23114185 ~ 23115039 (+) True LOC113545030

Expression Profile