RNA id: XM_026942548.2


Basic Information

Item Value
RNA id XM_026942548.2
length 1457
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC113543984
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 20517508 ~ 20521274 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggaagaggaagagggacTGGGTTGCATTCAGGAAAGGCCATGGCAGAAGTGCAGATTCGTCGCTATGAGGACGATGATGAGGAAGACGTGAAGGAGATCTTCACACTTGGAATGAGCATCCATTGTAAGGCAGCACTGGCTCAGAATGGAGGAAAAGTGATCATGTGATGACATACAGGAAGTTTTGAATTTTCCACACATCTtcgtgagtttaaatcccagcaccaccaagctgccactcctaggcccttgagcaaagcccttaaccctcaactgctcagttgtataaatgaaagttgctctggataagggtgtctgctaaatgtaaaatgcatttGTTGTTTAATGGACACAGAGATTGACTGTCTGATCAGCAGAAGAAACTGTGTAAGGATGTGGTATCAGATCCGAGAGTATCAAGACGTGGACTACTCTTCTGTGCGGGAGTTGTACTCTGCAGGCTTCAGAGAGCATGAAGGAGCTGTGTGTGTCCTAACCCTGAAACAGCACTGGGTTCAGGCTGTGCTGCTAGGACTCTTaattctcttcctcttcctgtttgGCTCTTTTCTGGCCTCCATTCTGTGTCTCATTGGAGTTCTGCTGGCTGGCAGGTTTGCTGTATCCTGTCTTTTTGAACAGGGAATACAGCTCGGGCTCAGCGAAGACCTGCAGGACATTCGGGCATCCTACATGCACCGAGGTCAGGTTAGCTGCTTTTGGGTAGCCGAGTCTAAGGGCTCCTTAATAGGAACAGTGGCAATATTACCCTGTGTGACAGAGCCTGGAGCATGGGAGTTGAAACGCATCTCGGTGAGAAAAGAGTTTCGGCACCGCGGCCTTGCCAAAGCACTTTGTCGGACCGCCCTGGAGTTTGCTGCCAGGCATAAAGTAGAGAGGGTGGTGCTGTTCACCTCTCTGGTGCAGTCAGATGCCCTTAAACTCTACCACAGCCTGGGATTCCACAAGGAGGAGGAGTTTGTTTGGCCATCACTTTGTGCCAGGCTCATCAACTTCCTTGTGTTTAAATACGCATATAAGGCAGctataaaatgaacagaacatgTTGGTGGTGTTGAATTTTCAAAGAAATGATTACAGTAAACCTGGATTCTGGGGACATGTTTGTGAACAGTTACAACATTGTATGTAAGGTGTTCCTTTTTGCTGTATTAATCATATTTACTATGATCACTCGGTGAAGCATGCTTAATACCTTTATTTTGTTCCACCATTGCAACCTTAATAGTTAATCTTGTCATTGTTCATCTAAGAACATTCAATATATGTTTTAGTGGTTTCCCCATTTTTTATAAGTACAGTTGCTAAATTATTCATTGCACATATGTCAAATCAGTATTTCTTTAATATAACATTGTATTTCTAAGAAAACCATAATTTTCTTAGTGTAATGTCCTGAGCACTGATGCtagaaaatatatacatgttaaaagtta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58889 lncRNA upstream 124962 20392367 ~ 20392587 (+) False pprc1
TU58738 lncRNA upstream 326405 20155901 ~ 20191144 (+) True G49643
TU58721 lncRNA upstream 334356 20121048 ~ 20183193 (+) True G49630
TU58541 lncRNA upstream 517863 19972587 ~ 19999686 (+) True G49518
TU58539 lncRNA upstream 574474 19933042 ~ 19943075 (+) True G49517
TU59001 lncRNA downstream 2542 20523816 ~ 20524049 (+) True G49853
TU59014 lncRNA downstream 59527 20580801 ~ 20585500 (+) True G49863
TU59015 lncRNA downstream 64330 20585604 ~ 20589230 (+) True G49864
TU59007 lncRNA downstream 98664 20619938 ~ 20716297 (+) True G49857
TU59323 lncRNA downstream 429296 20950570 ~ 20950991 (+) True G50140
XM_026942537.2 mRNA upstream 1913 20507217 ~ 20515636 (+) True slc39a8
XM_034302977.1 mRNA upstream 1913 20507811 ~ 20515636 (+) False slc39a8
XM_026939396.2 mRNA upstream 11118 20497593 ~ 20506431 (+) True manba
XM_026939407.2 mRNA upstream 20834 20485922 ~ 20496715 (+) False ube2d3
XM_034302971.1 mRNA downstream 826 20522100 ~ 20552594 (+) False dctn1b
XM_026938361.2 mRNA downstream 4577 20525851 ~ 20552594 (+) False dctn1b
XM_026938352.2 mRNA downstream 4578 20525852 ~ 20552594 (+) True dctn1b
XM_026938378.2 mRNA downstream 4578 20525852 ~ 20552594 (+) False dctn1b
XM_026938370.2 mRNA downstream 4579 20525853 ~ 20552594 (+) False dctn1b
XR_003403773.2 other upstream 1161451 19341350 ~ 19356098 (+) True sfxn5a
TU59013 other downstream 53699 20574973 ~ 20575479 (+) True G49862
trnae-cuc_10 other downstream 484176 21005450 ~ 21005519 (+) True trnae-cuc_10
TU60121 other downstream 1500133 22021407 ~ 22023811 (+) True wu:fj16a03
TU60615 other downstream 2263054 22784328 ~ 22786505 (+) True G51271
XR_003404579.1 other downstream 2592911 23114185 ~ 23115039 (+) True LOC113545030

Expression Profile