RNA id: XM_026942643.2


Basic Information

Item Value
RNA id XM_026942643.2
length 4960
RNA type mRNA
GC content 0.44
exon number 9
gene id cnnm2a
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 14977725 ~ 14994070 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGCGGCGCTCAGCCCGGTTAGATCGCTgactgctatttttttatttgtcaccgGCGGTCTGATAAGCCGCTCGGACGGCAGAGAAGCGGCGGAGGAGACCGTCATAATCGGCCTGCGTCTCGAAGACACCGACGACGTGTCATTCATGGACAAAGGCTTCTTGCGCGTTAGCGAGAGATCGCGCGTGAAGTTGCGGGTCTACGGGCAGAACATTAACAACGAGACGTGGTCCAAAATCGCGTTCACGGAGCAGGAGCGCAGCAGCGTGTCCGGAGTCGCAGACGGTCCACCCGGTTACAGCCAAGCGGACGCTGCTGCCTACCAGCCTTGTGGCATCCGATCGTCCGATATCATCATTCTCCCCAACGTGGATGTGAGCCGATCGACGTCCGGCGTCATCGAGATAGAAGTAAAACCCCTGcgcaaaacagagaagagcaaaGTGTACCACATGTGCGTTGCCGCACCAGCACCTGCTGCCGGCGGTGTGAACGACGCGTGGTCTGAAAACACCTGGATCTACCACGAGGGGCATGACACCAAAATGCTCGTTGTGGAGGAGAAGAAGTTCTTGCTGCCTTTTTGGCTGCAGGTAATATTTATTGCaatgctgttgtgtttgtcCGGCATGTTCAGTGGACTGAATTTAGGTCTCATGGCACTCGACCCCATGGAGCTCAGGATAGTGCAGAACTGTGGcacagagaaggaaaaaaattatgcaaaCAAGATTGAACCAGTGAGGAGTCAAGGAAATTATCTTCTCTGCTCACTGCTTTTGGGCAACGTACTCGTGAACACCACCTTGACTATTCTGCTGGATGATATTGCAGGCTCTGGTCTGATCGCAGTGATTGTATCAACCATTGGTATTGTAATATTTGGAGAAATTGTGCCACAGGCGATATGCTCAAGGCACGGGCTTGCTGTTGGTGCAAACACCCTGATTTTAACCAAGTTCTTCATGATCCTTACTTTTCCTGCATCATATCCTGTCAGTAAACTTTTAGACCACGTGCTGGGACAGGAGATCGGCACGGTGTACAATCGAGAGAAGCTCCTTGAGATGCTCAGGGTTACTGACCCATACAACGATTTGGTCAAAGAGGAGCTGAACATCATCCAGGGTGCTCTGGAGCTCAGGACTAAGACCGTGGAGGATGTCATGACACCTCTGCGTGACTGCTTTATGATCGCAGCTGATGCTGTCCTTGACTTTAACACCATGTCCGAGATCATGGAGAGTGGGTACACGCGCATCCCTGTGTTTGAGGGGGACAGGTGCAACATTGTGGACCTCCTCTTTGTCAAAGACCTGGCCTTCGTGGACCCAGATGACTGCACTCCTCTGAAAACTATCACAAAATTCTACAGCCATCCCCTGCACTTTGTCTTCAATGACACCAAGCTGGACGCAATGCTAGAAGAGTTCAAGAAAGGTAAATCCCACCTGGCCATTGTGCAGAGAGTGAATAATGAAGGCGAAGGAGACCCTTTTTATGAGGTTTTGGGTATTGTTACATTAGAGGACGTCATTGAGGAGATCATTAAGTCTGAGATTCTAGATGAGACAGATCTGTACACTGAcaacaagacaaaaaagaagATAACTCATCGTGAGAGGAAGCAGGATTTCTCAGCTTTTAAGCCAACGGACAACGAGCTTGGGGTCAAGATATCACCACAGCTTCTACTGGCTACCCTGCGTTTCCTAGCAACTGAAGTAGAGCCATTTGGCCCAGCTCAAATGTCAGAGAAAATCCTTCTGCGTTTGCTGAAGCATCCCAACGTGATCCAGGAGCTCAAGTATGATGACAAGAACAAGAAAATGTTAGAGCACTATCTCTTTCAGAGAAACAAACCTGTTGATTACTTCATCCTCATCCTGCAGGGGAAGGTAGAGGTTGAGGCTGGCAAGGAGGGAATGAAGTTTAAAGCTGGGCCCTTTTCCTACTATGGAATGATGGCCTTAACGTCATCACCAGTTCCACTCTCCTTGTCTCGAACCTTCGTTGTCAGCAGGGCAGAGTCTCTTGCAGGATCTCCAGAGAATAAGTCACCTCCCCGACCTTTTGGACTGAACCACTCAGACTCTGTGAACCGGAACGAGCGCATGGAAGCCCTCACTCCCACCCTGGCCAGCAGCAACAACCAGCTCAACGCCTTCCTGCAGATCTATGTGCCAGACTACTCTGTCCGAGCGGCCTCCGACTTGCTCTACATTAAGGTGTCCCGGCAGCAGTATCAGAACGCCGTCATGGCGTCCCGCATGGACAAGACACCTCAGTCTTCGGACAGTGAGTTCACCAAGATAGAGCTGACTCTGACTGAACACCAGGACGGACCAGGAGTCGAATCGACCTCACTGCTCATCCAACAGCATAACtcaactaacacacacaaacccaaccacatcacacacattgaTGGAAATATCTAAAGGAGACAGGAAATGAGACTTTACAGGGGATAAGAGGGCATGGTGAAATACCACAATCCACAGGATGGGATGTGCTCAAACGGTAGAGCAGTGAATGACCTAGGAACCAGCAGATGTCACTTCCTCACTCACTCAGCCACGCTCTATTCAGAATGCACTCACATCCAACAGCAGAGAGACACTCGGAAGGCTGTAGCACTGTCCGCTGTCCATCATCACTCCGACCCGTATTTTAACAGAGAGAACGACAGTACCTGccacatcacttcctgtcatcAAGGATTTATCACAGTCTTCTACCAGAGGTGGCAAtgcaaagcaaaagcaaaaagcaGTGTTAATGTACAAGTCAACTTTGTAACTGGTAGATATCATTCAGGGACATGCACATGCAAGTGCAAATTAACAGGAGATTCCTGCAGTGGACTTTATTCAGCATTGGTGTATTTGAGAGGGTGTTGTTAAGAGGAGCAGCGAGAACAATTTTAAGTCTAGTTTGGCATTAATTCCAGTTTTTCTTACCTCAGATTCAGCACGAAAGCTATGAGCGCTCTGGATTGTGTGTAAGCAGAGGAGAGTCTAGACTCCTTAgtaattttgcattatttacaaAGAAGGATAACCTTATAGGAAGTTAATTGGTTGCTTAACCTTTTTTATATGAAAGAATGTACATTTGTAGGCTGACCTGATTTTTGAGTGATCATTCACTGAAATCAGGGAGATCGATCACAGTATCTAAAAACCAATGCTGCTGCATTTCAGTCTAAATTTCCCTGACAAACTGACCTACTTAGTGATGCTTTCAGCAGTTTGAGAAACAAAGCCTGAAGGGAGAGTGccattttgtgattttaatcTATACAAGGAGCTTTTCAGAGTTTTTAGTCGTGCTAGATAGAGCGAATGTACATGTGACAGATTAACAATTGTCAGTCATGATTAGAGAAAGGTTAATACCCACAGAATCAAGTGTTTTCGTTTCTATGGCAAAGCCCTAACGATTTTCCACAGAAATAGAGAGCACTTACCAAAGCACCGAGTCTCTGATAATCAACCATGAAGATAAACTGCTACACCGTTTTGTGCTTGAGTAACAGCAAAAGAAGGGATGGAGCATTAAATCATGATTAACTCTCCAGTGATGAGGATGTAGGTGTTCTATTTCACTGAGCTCATAGCACTGAAACATTCAGCTCCTTGTATCACATTTATGACAGAAGTAACATTCTGTCTGGGTATTAGACTGTGTGCATGTAACACGTATTCAGATGTGCCATGTAAAGTATTTGCAGTACAAAGACATTCAGTATGTTTACATGTGAGGGATTTTTCCATGTACCTTACAGTGTCACATTTTACAGTGAATAGAGCAAGAGTGTATGTATCTCACATCGTAACTTCagtttttatatgaaaaaatgtTGGACCATTTTGTTATCAGTAACCTTTTGGTTTCTAGTGTCTTTAATCGTGTaaaactgtgtttaaaatgtgaatttctttttttccccagcttaAACAGTTCTAGTATTTCTATGCTGGTTTTTATGATTTCACAATTTCCATGTACCATGTGACGTCATGTTAACAAAGTAACATGCTAAAATCTAATTATGCTGAGTTCAGCAGTGGGCATAAGGTACCTTTCCACAGCttgtgaaacaaaaacaatcacacgtgttccttttatttgtttgcacCTCAGTCtggaatatattttaaaggtatATTACTTTCCTTGATATTAAGTTCAGTACTTCAGTTCATACACTGTAAGTGATGATTCAGTGTGGAGTGCTCTTTTTGAATTATCAGTGGTTAGAACCGGGGTCTCAGTCTTAAGTATTTATGTAGCGATCTGTCAGTGCAATAGTGTATCCGTTATGCAGGGACAATCAGCAGCATAACAccccacaaaacacacacactgtcaagTGCCCTTGTgaacaggaaacagaaaatCAGCTGCTAGATGGTTGAGGACAGGGACCGATGTGTTATCAATGAGACCCAGAACAAAATATGATGATGTTTCTGAGTTCACtgggacaattttttttttctgaatgataAATTGTTAACACTGAACCATGTCATCTGCATATTGTATAAGCGTTAACAATGCCATGCACTTGAAACTACGTAATCTATTCCAGAATATAGGAAGGAATGTTCTCCTTTTTCTCAGAGGACAACGTTGTGTCTTAAAGACTGTAAAATTATCATGGCCCACCTTAGACAGAACAGAAATTTTCTTCAGAAATGTGGTGCTCAGGCATATTGTTCGAATCCACCGTATATTGCTGCTATTCAGAGTTTTGAATGTCTAAAGAGATGCTGCAAAGGCATTGAGAATAGAAAGTTCTATTATATACTTACATACTATCAACAAGAAAATACTATATCTCTATATAAAGAAGTTGAATGTTGCTATTATAAAAGAATTGTTTTGACAAGAATTTTGCTTgattggtgcatttttttttctcaaatacCTCTTTGATTTAACAAATAC

Function

GO:

id name namespace
GO:0030554 adenyl nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55130 lncRNA upstream 3837 14972590 ~ 14973888 (+) False borcs7
TU55126 lncRNA upstream 10610 14965906 ~ 14967115 (+) True G46638
TU54849 lncRNA upstream 351252 14624473 ~ 14626473 (+) False LOC113541837
TU54851 lncRNA upstream 351353 14617654 ~ 14626372 (+) False LOC113541837
TU55220 lncRNA downstream 20054 15014123 ~ 15015181 (+) True G46713
TU55286 lncRNA downstream 85744 15079813 ~ 15084310 (+) True G46765
TU55287 lncRNA downstream 87584 15081653 ~ 15084310 (+) False G46765
TU55373 lncRNA downstream 424960 15419029 ~ 15419642 (+) True G46833
TU55393 lncRNA downstream 479132 15473201 ~ 15473870 (+) True G46849
XM_026943016.2 mRNA upstream 3657 14972568 ~ 14974068 (+) True borcs7
XM_026939277.2 mRNA upstream 16532 14946833 ~ 14961193 (+) True wbp1la
XM_026945446.2 mRNA upstream 41521 14910899 ~ 14936204 (+) True fbxw4
XM_034301900.1 mRNA upstream 73012 14898822 ~ 14904713 (+) False fgf8a
XM_026945712.2 mRNA downstream 30855 15024924 ~ 15029815 (+) True polr1c
XM_026941657.2 mRNA downstream 39994 15034063 ~ 15058779 (+) False ldb1a
XM_026941697.2 mRNA downstream 39995 15034064 ~ 15058779 (+) False ldb1a
XM_026941635.2 mRNA downstream 39995 15034064 ~ 15058779 (+) False ldb1a
XM_026941626.2 mRNA downstream 39997 15034066 ~ 15058779 (+) False ldb1a
XR_004577898.1 other upstream 610279 14361367 ~ 14367446 (+) False cgas
XR_003404567.2 other upstream 694557 14213402 ~ 14283168 (+) False slc24a3
TU54033 other upstream 1476679 13498092 ~ 13501046 (+) False pcbd1
TU53738 other upstream 1944477 13032279 ~ 13033248 (+) False si:ch211-223p8.8
XR_003404144.2 other upstream 1977763 12982406 ~ 12999962 (+) False col17a1b
TU55629 other downstream 799359 15793428 ~ 15797204 (+) False eif4ebp2
XR_003404341.2 other downstream 1076645 16070714 ~ 16073067 (+) True cxcl18a.1
TU55689 other downstream 1076690 16070759 ~ 16071920 (+) False cxcl18a.1
TU55884 other downstream 1240466 16234535 ~ 16236648 (+) False lrrc18a
XR_003403773.2 other downstream 4347281 19341350 ~ 19356098 (+) True sfxn5a

Expression Profile