RNA id: XM_026942679.2


Basic Information

Item Value
RNA id XM_026942679.2
length 2705
RNA type mRNA
GC content 0.41
exon number 7
gene id st3gal7
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 16968321 ~ 16972471 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAAACATTCGCATAACCACTGTTAAGAGTCACAGAGTTGAACTGCCACCGATCTCTCTTCTACTCAAATCTGACTGCTCTTTTAGGCCAAGAATCACAAATAACATCTGAAAAGCAAAGAGGAATGCTCAGGAAGTGTTCATAGAAGCTTGGAATCCTGTGGCTAGATGGTGACTTTAAAGCACCTGAGCGTGAAGGAGCATGAGGAAAACAGTGTTCCACTGCTGGCTGAAGCAGAGACCGCAGAGAGCCCAGCCATTAAACACAGGAGGGAGTCCAGAGAATtcttcctcacacaGCGGACAAACCTTGGCCTGAGCATCGCTCTGCTCCTGAGCTGTTATTCAGCAATCCTTGTCCCTGCTTATCTACCTACTAAACAACCGACTCGGATTGAAAGCTCCACAGAAGAATATATGGCGATACTGAATCACTCAGCAGCTCTGCTGTCTCGGCCATGTATAAGCGGCTTGGCCAAGGCAAAGCTGCAGAAAGTGCTGAATTTCCACAGCCTAGTTCAGATTCCTGCGTTCCTGCAGAATGGAACCAGACACTGGGAACTGGCACCTCCACTTGGTCTGCTAGGCAGTGAGGACACGTTGGCACAGACACTTAGAGTTCTGCCCCACTCTGGACCTCCCTCATTCCCAGACAGGTGTAGAAGATGTATGGTGGTTGGGAGTGGTAGAATCTTACATGGCAAACATCTTGGAGcccatattaataaatatgacatcATTATAAGaATGAACAATGCACCAGTGTTTGGATTTGAGGAAGATGCAGGCTCAAGAACCACAATTCGACTGATATATCCTGAAGCAGCGTCCTTCTTGGCACAAGAATATCAGAACACAGACATAGTAGCTTTAGTAGTATTCAAGAGGCTGGATTTAGAGTGGTTGACCTCTGTTGTAACAAAAAAACCTTTGAGCTGGTGGTCTAAACTGTGGTTCTGGAGAGACGTTGTAAATGATATTCCACTTCGGCCAGGAAACTTTCGCATCTTGAACCCTGAAATAATCAGCCGGACATTGCATGTGCTGCAAACCTATGGAAAACATGAAAGCAAGACAGTGCCTACTCTAGGCTTCACAGGCGTGGTGCTGGCACTACAGCTGTGTGATGAAGTGAGCCTGGCAGGCTTTGGCTATGACTTCAAACATCCTGGATCACTGCTCCATTACTATGGGACTGTGCGCATGGACCACATGATGGCACAAGTAGTGCATGATGTCAGCGCAGAGCGCAGTTTACTGCGGGACCTTGTCAAGTCTGGTGTCGTGCATGATGTCACAGGTGCAGTGTAATtaacagtgggcctcatttatcaaactagTTATGAAagtatttattaacaaatggtTTGAAAGATGAAAATCCTGttattgttaaaatgtttgCATCCTATAAGAGCTTCCGAGTTTAtatacagtcgggtccataagtatttggacagctAATTTTGCCACTGTACACCATTACAATGGATTTGTAATGAAGCAATCATGAGTTTGAAGTGCAAGTAAagcatgcaatatttttgttaaatgccttgaattaaagctggaaGTCTATACTTCAATTAGATCAATTAGATGGCttgatttcaaatccattatggtgGCGAACAGAGGCAAAAATACGAAAATTtgccactgtccaaatatttatggacccgactgtataAAGAGACACTAATGTAAACGTCATGttcagcttcaaatcatataattggcaatgagttactgcaaatttatatatggattatgttgtcaagtttaaatagcatatttatttcacttgcacacatgaatttaataaaaaaatttgtgacttggttgtttcatattaatgacttgaaataAAGTGATCCAAAACAATCCATAAATGAGTCTAGCTATCCAGTTAGGGCAAAAAACAACCCCCTATAAAATGAGTTAAAGTTAGTCTGTGCCTGTGCCTGACACACtacaatggctgagctgcattacagGATGATTTTGCGCACACCACACTTGGATATGTTTAATTTAGTTGGCATTTTGGTGctttcagctctgtgagctttTTATATTCTTTGCCTTGTGCTGTGGGTGAACATGAACGTTAGTAATTTACGGGTGATCGGCATGTATCAACATCTACACGTGAATATGTAGAAAATCTGCAAGACTGAAACTTCTGCAAATCTGGCAAGAATGTTTTTTTACTTTGGTTTGTCTATGAAACCACTTAtacacaactttattaaaacagTAAGAAATGAGGCCCTATGTTGGTACATTGAACCTGACTTGCACTGAATATCGTTACTTCCAATCTGAACTGGGGCTATTATTTGAAACTAAGAACATATGTGAGATTAGATTTCAGTGAATAGGTTAAAACAGAGAGAACAAATGTGTCAACTAACACCCCATGTACAATGTCcaaaaaatcaagtaaaaaatTAACAAGACATGCTATGAGGATCCTGATTCACAGTGGTCTGCTAACACTAAACCCAACAGGTATCTCTTACATGTATAAGAGATGCAGAATTGTTCTGGTGATTGTTCTAACCCATGAAGCTGGCACAGGATGGCTGTGAATTATGAATGGCtgacatattttaataatatttaatgacaACTACAGTTTATAAActtgttccatttttttttaaaactgtacatCAGTGTTGATGGAGTGTATTTGTTTAAT

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0097503 sialylation biological_process
GO:0030173 integral component of Golgi membrane cellular_component
GO:0004308 exo-alpha-sialidase activity molecular_function
GO:0047291 lactosylceramide alpha-2,3-sialyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56451 lncRNA downstream 179592 16788519 ~ 16788729 (-) True G47735
TU56444 lncRNA downstream 200811 16765709 ~ 16767510 (-) True G47731
TU56286 lncRNA downstream 276722 16676050 ~ 16691599 (-) True G47599
TU56130 lncRNA downstream 522017 16444696 ~ 16446304 (-) False zdhhc16a
TU55985 lncRNA downstream 695790 16271270 ~ 16272531 (-) True G47359
TU56621 lncRNA upstream 36369 17008840 ~ 17009049 (-) True G47882
TU56682 lncRNA upstream 117911 17090382 ~ 17090583 (-) True G47940
XR_004577905.1 lncRNA upstream 144483 17116954 ~ 17129613 (-) True LOC117596916
XR_003404617.2 lncRNA upstream 398971 17371442 ~ 17419407 (-) True LOC113545496
TU56927 lncRNA upstream 528162 17500633 ~ 17503860 (-) True G48158
XM_026944408.2 mRNA downstream 75578 16877460 ~ 16892743 (-) False LOC113545189
XM_034303171.1 mRNA downstream 75585 16875201 ~ 16892736 (-) False LOC113545189
XM_034303170.1 mRNA downstream 75585 16875201 ~ 16892736 (-) True LOC113545189
XM_034303172.1 mRNA downstream 75586 16875201 ~ 16892735 (-) False LOC113545189
XM_034303173.1 mRNA downstream 75586 16875201 ~ 16892735 (-) False LOC113545189
XM_026933946.2 mRNA upstream 6660 16979131 ~ 16982729 (-) True morn4
XM_026933955.2 mRNA upstream 6660 16979131 ~ 16982012 (-) False morn4
XM_034303043.1 mRNA upstream 159661 17132132 ~ 17276658 (-) False pcdh15a
XM_034303042.1 mRNA upstream 159661 17132132 ~ 17276658 (-) True pcdh15a
XM_034303046.1 mRNA upstream 189599 17162070 ~ 17276658 (-) False pcdh15a
TU55523 other downstream 1551838 15413941 ~ 15416483 (-) False c3h10orf53
TU55100 other downstream 2183587 14779865 ~ 14784734 (-) False sdhaf4
XR_004577668.1 other downstream 2776078 14181891 ~ 14192243 (-) True ccdc85a
XR_004577863.1 other downstream 3937125 13005486 ~ 13031196 (-) False slka
trnal-cag other downstream 4234039 12734200 ~ 12734282 (-) True trnal-cag
XR_004577773.1 other upstream 6660 16979131 ~ 16982729 (-) False morn4
XR_004577771.1 other upstream 6660 16979131 ~ 16982729 (-) False morn4
XR_004577772.1 other upstream 6660 16979131 ~ 16982729 (-) False morn4
TU56907 other upstream 498716 17471187 ~ 17476061 (-) True cisd1
XR_004577786.1 other upstream 589861 17562332 ~ 17574422 (-) False LOC113538666

Expression Profile