RNA id: XM_026942772.2


Basic Information

Item Value
RNA id XM_026942772.2
length 3375
RNA type mRNA
GC content 0.42
exon number 15
gene id LOC113544122
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 11745748 ~ 11766414 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCTTTTGACATAGACATATTTAGAGGTTAAGAGCCATCTCTCACAGAAGGGAAGAAAGCAAGCACAGCACACAGGACAGTGTATGACTCATGAATTAGTGTGAAACGAGGATGGAGAGCACTTCATCAACAGCAGGTTGTTACAGAAAGTGCAGTCATGTAAAAAGCAGGAGAAACAAGAAGGAGGCACTCAGCAGTAATGAGGAAAAGAGGGAGCTACTTTCTCTACAGCAGATGGTTCATCAACTGATCAAGGAAAAGAATACCCAAAAGAAAAAGGCACACAAAACAATTCACAAACAGAGCCAGCTGATTGGTTCTCTGGAAGCAGAGAGACGGGGCCTACAGGCAGAGCTTGAGGGGATCAGATGTGTGCTAGGAAGGGAAGAGCTTTTAAGCCATTCCATTAATCATCTGCGTCATCACAGTAAGATTGTGgatgaaaacatcattcaagaAAAACAGACCATTGATGGATTACAGAGAGAGATACAGGAGATGCACAGGAAGATTGGGAAAGAACGGAAAGCCTCAGCTTTTGAAGCAGATCCAACCAGGAAAATACAACGCCTTACAGGTCAACTTGCGCAGGTTAACAAAAAGTTCAGCACCTTTGTATCAACCAACACCCAGCTCCGGCAGGACAttgaaaccttgagaggagaAAAAATTAAGTTCCTTCAAATGCGCAACAAGCTAGAGAAGGTACTGCAGGAGACCCATCAAGAGAAAACGACAGTGTTGAAGCAAGCCAGGAAAAATATTGAAGTCAGAGAGGATGCTAAGACACGGATGCTCCATGTGTTGGAGCAGACGTGCTCAGAGGGCGACAGTCATGCAGTGGATGTGCAGGAGCTCCAGAGAAGAGTGAGCCATATGGAGAAAACAGAGCATTTTCTACAAGAGAAGAACAAAGTCAGACAACCTGACCTGTATTACCAGGTTACTACCAAGAAAAGAGAAGCACATGAACAAGAACCGAAGGTAGACCATGAGGTGAAGCTAAATGAATATGAGGTTGCCATGGAGAAGATCAGCGACATCATTGAGAGGCGGGGCAAAGGGAGTCAAAGCGCAAGGCAGAGAAGAAGGCGGAGCTCAGACTGTCAAACTAGCAGAGTGGTGGAACCACCTCAGAGTGCATTTTGGAAATCAGCTAACAGGAGGCGCTGCACATTAGGGAGTGTGATGTTCCGCGAAGCAGCAGCTGGGATTTTGGGGGATCTGGAGGGGTCCAGTAGAGGCAGGAGGTTCAGAGAGCACAGGAGGCGCTCCACACTACTGCAGGGCCTCAGAGCTGATGAAcaggagagactgagagagctGGTGCAGCAATCCCAGCAGCCCCCTGCAGGCCTTAACCCACAGCTCCTCTACGACTCCTACGTGGAGGGAGAGAATCTGAACTTGGCTCTCTTCCAATATGCATTGGAGCAGAACAGGCAGATACAGGAGATGACCAAAGATGTGCATGAGCTCAGGATAAGTGTGAAGCAagaagaggagagggagagtgCAGAGGAGCGTCGTCTCCAAGACCGAGTGAGAGAGCTGAAGCTGAGCTGCCAGCAGGTTACCCAAGACACAGAAACACTGCTAACAAATATAGGAATGAAAGAACGGGAATTCATCCAAGTCAGAGCAGGTATAGAGAGTTTGGCTGTTCAGGCTGGAGTGGATGCCTCTGCTTTTGAATTGTGCAGACACTGGACTGAGGATGGTGGAACTGCATCTATTCTTACTCTGCTGGCACAAATAGAGCAGAGAGTTACCCAGTTACTGACTCTTCATTCTTACACACAGTATAGGGATGACGAAAAGTATTTCAAGCATGCTGTATTTGAGTTCAATCCACGAAAGCTGTCATATACAGATATTCAACCTCCTGCACTCAGtttctttCCTGAAAGTGAGGAAGAATATGATGAGGAACTGAAGCTTCTGTCCAGGGAAGAGCTTAAGAAGAATGTTCTGGAGACAGACAGGTTTTGCCCAGCATAGATATTCTCTGAagtcaaaacatgatttgtaagaCTGAGGTGGTTGCAACACACAATTGTAGTGTTTGTAGTGTACTACATCATGAACAGTAGATTTATTTAGACTTGTTAGACTGCTGACTATAATTAAGATTTAGAACTTGACAGTAAGAAATTCAGATGACTGGGTGTGATCTAAAGGTACAATACATCTCAGAGCTTGTCAGCCATCATGTTCACTATTTAGCAATAGATATAATGTTGACTCAGTCCACCAGTTTTGATTTTATAGCAGTACAACTGTAAGACCTAATTTAAAACACCCCAAAATTTCCTATCATTTAtctaaagcagcagtcagactttaatacaatttattattaattttttatcaaTGTATTgtttatcaatttattttttcaatggGAGAAGCCTGAGGACACAAAAAAGTAATTTTCTTTTAGTAGGGGTTAacttttcacactcacactaagtTCATCTAGTTAAACAAACCTAGAAAACAAGAACATAGCCTtgtgtatcttttttttctcaaaaataaataaacttctaaTTATTAAGGAAGGTGTTATCAGACCTATGCCTTTATATTTTGtcattattgtttattgtaGGAAATGATAGGGGGAAGAAAATGGATATCTCACTTCAAAATGACAGTGCCCCAACAAGCCAATAGTCTTCTGATTTTTACACCAGAAGAAAATAGCTCTGAGGAAATCCAGTGTGACTTCTGCTTAAATTGTTAGCAGACAGATGCTCAGGGATCACATGCTCAGGGATTCTCCTAATAAGGTGAACTTTATTGCCCCTTGATCAGAATGACCTAGACATAATCTCTGGAATATActtattatttgtaaatgagATTGCTCATGTTCATGAAAAAACTGAGTGACGCATATAAAGTTTTATGTTGGAAAAATCATTGCAGTGTTGTTTCATGTGTAAAATTTGGATCTGTTTGAAAAAgaactttaaaatgatttgcttAACAATATGTGACctccaaaatatttattttatgtcatcAACAAGTTGGTCTATTTTCTAcataatggtttcctacattacattacaatgtTGTTTGACTACCTGCAGACTGGCACCAGTGAGAATTCATCTCTAGCTAAAGATATTGACTCAGTAGCACTCTAGtccttttgtcttttgtccatcctctctcacctcctcatctgtatacTCTGCTCAGATcaacttccaaagcttcaagtttcatgctaataccaccatcagtGCCATTATTCTCGTCATCtggtagatcgctaactagatGAGCCGAGTCTCTGTCATAACTCGGAGTAACTATATTGTATAACtacattgcattctggaactcaAGGTCCAACGTTTA

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process

KEGG:

id description
ko03020 RNA polymerase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52526 lncRNA upstream 360586 11384792 ~ 11385164 (+) True G44463
XR_003404586.2 lncRNA upstream 426875 11317785 ~ 11318875 (+) True LOC113545104
TU52456 lncRNA upstream 448036 11297492 ~ 11297714 (+) True G44398
TU52268 lncRNA upstream 689896 11054078 ~ 11055854 (+) True G44221
TU52269 lncRNA upstream 691897 11053575 ~ 11053853 (+) True G44222
TU52776 lncRNA downstream 51314 11817728 ~ 11819947 (+) True G44704
TU52856 lncRNA downstream 188575 11954989 ~ 11995143 (+) True G44777
TU52847 lncRNA downstream 192126 11958540 ~ 11962186 (+) True G44768
TU52933 lncRNA downstream 260410 12026824 ~ 12027030 (+) True G44843
TU52936 lncRNA downstream 263220 12029634 ~ 12030106 (+) True G44846
XM_026944599.2 mRNA upstream 526 11682868 ~ 11745224 (+) True LOC113545306
XM_026944607.2 mRNA upstream 527 11690676 ~ 11745223 (+) False LOC113545306
XM_026944625.2 mRNA upstream 528 11688895 ~ 11745222 (+) False LOC113545306
XM_026941962.2 mRNA upstream 450770 11254621 ~ 11294980 (+) True hs3st1l1
XM_026934595.2 mRNA upstream 537888 11099593 ~ 11207862 (+) False dntt
XM_026936532.2 mRNA downstream 46371 11812785 ~ 11815652 (+) True nkx6.2
XM_026939817.2 mRNA downstream 271087 12037501 ~ 12120513 (+) True LOC113542347
XM_026942972.2 mRNA downstream 367685 12134099 ~ 12143029 (+) True LOC113544275
XM_026936991.2 mRNA downstream 563636 12330050 ~ 12340992 (+) True dmac2l
XM_026937000.2 mRNA downstream 566586 12333000 ~ 12340992 (+) False dmac2l
XR_003404598.2 other upstream 18978 11682864 ~ 11726772 (+) False LOC113545306
trnag-gcc other upstream 38745 11706935 ~ 11707005 (+) True trnag-gcc
trnag-ccc other upstream 154345 11591335 ~ 11591405 (+) True trnag-ccc
XR_004577793.1 other upstream 574636 11099593 ~ 11171114 (+) False dntt
XR_004577889.1 other upstream 1137046 10594574 ~ 10608704 (+) False LOC113543929
trnay-gua other downstream 869906 12636320 ~ 12636406 (+) True trnay-gua
TU53286 other downstream 873422 12639836 ~ 12643195 (+) False LOC117596823
trnat-ugu other downstream 901400 12667814 ~ 12667886 (+) True trnat-ugu
XR_004577802.1 other downstream 1163145 12929559 ~ 12936802 (+) False spef1
XR_004577803.1 other downstream 1163145 12929559 ~ 12936802 (+) False spef1

Expression Profile