RNA id: XM_026942835.2


Basic Information

Item Value
RNA id XM_026942835.2
length 6811
RNA type mRNA
GC content 0.48
exon number 12
gene id map3k21
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 9382638 ~ 9408518 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gcctctgagtgtgtgtggctggcGTGTCGGTAGGGTGAGTGGCGGAGGCAGGCTGACGCCATGGCGCTGTTCCGCCGAGTTTCTCCGCCAAGTTACTGGACTTCTGGGACTCTCTGCACTTAAACTACTCGCTTTTACTCGAATTTTGGAGCTTCGGATTTTCACTTGAGCCCCGGTGTTTTTATTGTGAGACGGAACACAAAGTTTGTGCTGTGTtttcagacgtgtgtgtgtgtatgtgtgtgtgaagtggagTCAGGTGAACTCAGCGGCTGTATTAGTAAACTTGGTAAAGAGCTACGTTTAGCTTACTCTGCTAGCTTACTCTGTCGAACAGACGACACGATGCGTAAAAGTGGGAAACTCAGAGGTAGTAAAGACGTgttgtctttttaatttgtgttaaacacatgtgtatgtgtgtgtgtgtgtgctcggtTTGTGTGGTTTATTCCGCTGGAGTGGGCAGGTAGGAGATACTTTGCACCTGTTAAGTTAAGCTCGTTGCTAACGTTAGCAAGCTAATAACTCAGCAGTGGCCTTTACAGACCGGGTCTTCTGTCTGTTCAGCTTTAGAGAAAGTTAACTAAACTTAAAGAAAGTTTAGTTTAGGTTTAATAAATGACTGAGTTGTGTGTTTAACAGCGGAAGTTGAGTGTGTAACATTATCTCGGCTGAGGTTTGGGACGCTACAGTGTCAGGTTGGTGTAGCTGGTTTATGTGGACAGCAGGCAGCTCACACTGAAGCCCTGAACGGATCAGACGCAGACTCGCGCACTGAGTAATGAGGCGCGCGCCGGCTGTCCCGGTGCTTATTGCATGTCTGGAGACGTAACGCAACCCCGGTTTACGTTCATTTTCCGCTCGGACATCAGCGCACCTTATGGTGCCGCCGCAGGCGCCGAGTCATGGATGTTCCCCGGGCCGTTTTCCCGAACGGTGAGGGGCGACTAACGGAGCATGGCTGGCCGGAGAGctccacttcctcctcctcctccgcagcagcagcagcagccaccGCCGCCGCCGGGACATGTCGCGCGCACTCGGCGCCGGCGCGCACGCGCTCGCTGTGGACTGCGGCGTACGACTACGAGGCGAGCGGCGAGGACGAGCTCAGCCTGCGGCGCGGTGACGTGGTCGAGGTGCTGTCCAAAGACGCCGCCGTGTCGGGCGATGAAGGCTGGTGGACCGGCAAGCTCAACCACCGCGTGGGCATTTTCCCGTCCAACTACGTCACCTACAGACCAGCGGCGGTGtcctcaccatcaccatcagcaGCGGCATCGCCAGATCCCTTGAACATCCCGTTCAGCGCGCTCGTGCTCGAGGAGATCATCGGCGTCGGCGGCTTCGGCAAAGTGTACCGCGGCACATGGCGCGAGCAGGAGGTGGCCGTGAAGGCGGCGCGCCAGGACCCGGACGAGGACATCACCGCCACCGCGGAGAGCGTCAAGCAGGAGGCCAAGCTGTTCGCCATGCTGCGCCACCCCAACATCATCCGGCTCGAGGGCGTGTGTCTGGAGGAGCCCAACCTGTGCCTGGTGATGGAGTACGCGCAAGGAGGCACGCTGAACCGCGCGCTCACCGGCAGACGCATCCCGCCACACATCCTGGTCAACTGGGCCGTGCAGATAGCCAAGGGCATGCAGTACCTGCACGAGGAGGCCGCCGTTCCCATCATCCACCGCGATCTGAAGTCCAGCAACAtTTTAATACTTGAAAGAATTGAGAACAATGACATTGGTAGGAAGACACTGAAGATCACTGACTTTGGCCTGGCTAGAGAGTGGCACAAGACTACTAAAATGAGTGCTGCTGGCACGTACTCGTGGATGGCTCCTGAGGTCATTAAATCCTCCCTCTTCTCCAAAGGCAGTGACGTATGGAGTTATGGGGTGCTTCTCTGGGAGCTGCTGACAGGAGAGGTACCTTACCGTGGTATCGATGGGTTGGCAGTTGCCTATGGAGTGGCTGTCAACAAGTTAACCCTCCCCATTCCATCCACCTGCCCTGAGCCTTTTGCCAAGCTCATGGAAGAATGCTGGGAGCAGGATCCCCACATCCGACCGATGTTCGCCACCATCCTGGAGCAGTTGACAGCTATAGAGGAGGCTGTGATGGCCACCATGCCGCAGGACTCCTTCCACTCCATGCAGGAGGACTGGAGGGTGGAGATCCAGGAGATGTTTGATGAGCTGCGAACAAAAGAGAAGGAGCTGCGCTCTCGTGAGGAGGAGCTGATGCGGGCGACCCTGCAACAGAAATCGCATGAGGAACTACTGAAGAGGAGAGAGCAACAGCTggctgagagagagatcaaTGTGCTGGAGCGTGAGCTCAACATCCTCATCTTCCAGCTGAACAAGGACAAGCCCAACGTCAAGAAGAGGAAGGGCAAGTTTAAGCGCAGTCGCCTCAAGCTGAAGGATGGCAACCGCATCAGCTTGCCCTCAGaTTTTCAGCATAAGATCACAGTGCAGGCCTCGCCATCgatggagaagaggaggagCCTGAACAGCACCAGTTCCAGCCCTCCCAGCAGCCCCACTCTCATCCCCCGTCTCCGGGCCATCCAGCTGAGCTGTTCCAGTGACTCTACACAAAGGaacagtatatatgtgtatcACCAAGATGTGGATATCACGAACGAGTGTAAACCTCGTACAGGGAGGAAAGTAACTCTGGACGAGAGCAACAGGACGTGGGGCAGGAGCACCATCTATAAGCCTGAGGAGTTTGAGGATGCGAAGAAGGGCATAAAGAAGAAGGTTCGCACATGGGGTCCGAGCTCCATTCAGACCAAGGAGAGAGGAAACAGTGCTGAAAGGGTTCGGCCGCTCTCGGATGGAAACAATCCTTGGTCTACAACTCTGCTGAAATCCCAGAAATCTGTTCCACTGGCTGCATTATTTGCCGAGCAGGGGACGGCTAAAGATGAAACAAGCTCTCTCGAAGGTTCAGACAGCAAACCAAAGCAACTCAAGTTCCCCAATCAGGTCTATATTGATCTACCTCTGTGGAAGGACGAGCAGAGCGAGGGGCCTGGGGTCGGTGTAGGGGGCGGGACAGAGAGCCAGGAGGAGCCAGCCACATCCACCAGCTCAACAAGCACAACGCCGCAGCACACACCCACCAACAGTCTGAAGCGCAGCGGTGGGCGGCGGCGCACAGACACTGTGCTGTACGGCTGCGCCTCGCTCCTAGCTGCTGTGGCTCTGGGCCTGGACCTGCGTGATGCCCACAAGGCCACACCCACTGATGAGATGGAGCCTCGAGAAGACAGGAAGAAGCGAGAAGGCCTGTTTCAGCGCGCCACACGTTTCCGGCGCAGTTCCAGCCCACGCAGGGACGACAACCTGCTGGCCATGTCTTCTATCTCAGAGTGCAACTCCACCAAGTGTCTCCTCCATTCGGACTCTGAGGGTCTTGAGCACAGCCCTGTAACTGAGGCACCACTTAATGGCTCTGGATTCTGCAATATCAGCCAGTGCGGCAGAAATGTGGGCAGGACTGATCATCTGTGCCCACCGTTGGTACCAGAGCATGGCACCACCTCTGGGTCCCGGCTCAGGAGGAAGAAATCCAGTCCTGCTGTCTGTCAGAATGcaGCTGGCACCAACTGTTCTGTGTCTAGAGCTGCTGCAGATGTCCCTGTAGTCTCGTCCTCCCAGAAAAAGAAACCGGACAGAGAAAGCAGCCAGGAAAAGCAGACTGCTTCAGACTCTGTCTCCAGGCCCAGGCCGTTGTCTCTGAGAGCCAAACCTCACTGCTGGGGTCTTCTGAGGAGCCGAAACAAGAGCTACTCTCTAGGTCACTGCTCTGGAGAGAAGAGTGCACAGAGCCTGGGCATAGTGCTGTCCTCCGAGGTCAAAATGGGCTGCTCTCTCTTAGACGTGGACACCGAGGGACAGAAACGCGATTGCACCGTTCCCCTTTGCCGAATCCAGAGCACACCAAGTCGCCTGTCTGTCTTTGAACTGGAAAAAGAGTTCTTTTCCTGAAATGAGCtgcctctcctctcctctcctctcctcttagAGCACAACCCAACCTTCTGACTTCAATCCAGTTACAGTTATATGACGAAAGATTCTTCTGTGTTCAGGACTCACAAAACATTGTGGCGTTTGTGCCCAATTTTAAGATTTTGCTGCTGGAGTTgtcatgttgtactttttttatttatattcacttTATTTTGATAAGTAATTTAATATGAAAGGACATATGAGCAAAATGATCAGCATTCCGTTTTACTGAAGAATGGCCAGTGCGTAGCGCATtccatatatgtgtatatatacatatacatacatacataaaagaTGTCGGTATACTACTGTACTTCAAGATTTTGtagatttatatttgtattagaAACAAAGTTGTTTATTCAACCTGGATAATCCTGGATATTAGAGGTTATTCTGAACTTATAGTGAATGAAAatgggttgtttttttgtttttttttttttttttttttttttttttttatatgctacTGCAGGTTTTTGCCCCCTGGTTGATCAGAATGTAGAGGGATTCTGCTGTATGGTGCAGACGTGAACTTACAGCAAATCAGACGTATTTATGGAAAATACGTTAGTTCCCTGAGGAAGTTAGATGGGTCATGTGACGTAGTGACTTCCCCTGTATTGCTTGCTCAGTATCTGCTTTTCTTTAAtgaatttgccaacaataagATTTTCCGTGCTCTCTGTAATATTTACTCGTTTTAACCCCGAGTAAAATGGTGCAGTCAGTATTACATTCTCAGTGAGACAGTGGTCTCACTGTCTTTGGGTTCCCACGCCACGGAGTTGGCTGTTGTTTGCTTGTTGCTATTGTTCCCAGGTGACCTTTCCTTTTTCACCACACCTGTGAAACGGGTACAGAGTATTGTCTGTCATATTGAGATTGTGTGTCTCCCCTGCTTGCTATAGAGCTCTTTGTGCTTTTAATGTGTCTGGTTAAACTGATTTCTCGAAGTTTACAAGCTATAGCTGCACTGTGGTTTCAGACTTTTCATATGATGAACACAGAAAGCCCTCGTTATTCAGTTAAATATCCAACATGAGGAAGGGATTAATCAGCTTATAAAATACAGACTGACATTCCTCTGAAGATAGTCTGTGAGGTTAGAAtgtatttgttttgcttttgcttttgcttttgctttatCTGAACAACTCAATTGGGAATGCCAAACAGAGGTGATGAAGTATGTGCAATGCATTTTCCATTCAAACACATTAGTTTTCACTGAAAGTGTGAAAATCTGTTTTACTGTATTACCTGAAAAGCAGGTAATGAATTCAGTAACAGAATGGCAGTGATTACCTGCCCTGTGCCAACAGTTCTTGGTTTTTAAATTAAGCATCTTGATTACAGCTCTGATGTTGTTTTATGTATCATGTTAGTGGACCAAAATATAATCTGAATTTGATTAGCTTATTCCTTGACTTAAAATGGACTGTTTTGATGCATTCCTTCAACatagtttaatattaaatgttcttttttcttttcttattccTTACAACTATTAGCTTCTCTCATTTGTCTCACCTGGCTATTAAATTGAAAGGTTTTTTTGAATTGCAATCTAAGCATCTATTCGCTAGTAAAGAGCTCCATTTTAGCTCATTAAGTGTACTCAGAGCTGGCACACACTGATCCGCTCTTAAGTAGGTTCTAGCTCAAAGCTCAGTGAAACTAAGCAACAGGGTATAATCTGAATCCTTTCCACAATGTTTGTTTCCTTgtaatactgtgcaaaagtgttACCACGGTCATCAGACCTTAAGCTTGTTTAGAAAAGgagttaaatgtttttgtttttttgtaaacttcCTTTATGTGTATTAGAGAATATTAAACAACTGGCTCTGCTGAGAGGAAGCAGTTTTGTAATGACTCCCAAAACATTCAGGTAAAAACAAGCAAATTGATTTTATAGATTTTGTACCATCTGCTTAAACTGTGTATGTACATTCATAAGCAACATTCAGTCAAAAGTGTAGGTGTAATTGAGCTTTGGGTTAAAACGAGGtgttttaacttttaataaGTGGGAATAAATTTCATTCTGTGAAATCACCTCACACGTTTGCAAGGGTTTATTATCCATGAAGGCAACTGTCCCTTGTGATTTGGAGCATCTGTTATAACATGCCCTGTGATCATCTCATAAGAGCTTCTTATGTAGCACTGCAATTTTGAAATAGTGATTGTTGATCCTGAACTGCTGATttacaagatttttttaaaatgtgaaattaatgtGGTGATGTCTCTTACAGGACACCAGTGAGGCTGGAACTGCAGTTGCACGTTTTGATTGCATGAgaacaaaacactgaaatgtgtgaTTCGGgatactgtaattatttttactaaAATGAAGTAGTAGCGTGTCTGTTGGAAAAGTAccagatatatatttttttcaagcaGTCATGACTACAGATTTGAATAAAAACTGCACATGGACACTAAAAGACACTAAATGATATTTTCTACTGGATGAACTTCTCACCAAAGTTGCCCTTTCTTTCCAGCAGTTTGGTTTctgaaagtattttttaaaaagcaatattTGTTACATGGatcacatgtactgtatatacataatgATTATGATGACTTCCGCAATTATTTTAGTGTCTGTTTGAGCCACATGACCAAATCAACGTTGAGGTGGTTTGCTGGTGCTGTTTTAGATCACAGTGCCAGTGagtgttggaaagggttcatcCTGGAATCACTGCTGTACTCAAGTGACCAATAAATCCTTTATTCCTCAA

Function

GO: NA

KEGG:

id description
K17534 MLK4, KIAA1804; mitogen-activated protein kinase kinase kinase MLK4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51055 lncRNA upstream 35402 9345430 ~ 9347236 (+) True G43186
TU51058 lncRNA upstream 37457 9344055 ~ 9345181 (+) False G43186
TU50999 lncRNA upstream 158045 9224363 ~ 9224593 (+) True G43137
TU50649 lncRNA upstream 367597 9012486 ~ 9015041 (+) True G42848
TU50628 lncRNA upstream 428612 8953522 ~ 8954026 (+) True G42833
TU51239 lncRNA downstream 80241 9488759 ~ 9488959 (+) True G43330
TU51246 lncRNA downstream 86459 9494977 ~ 9495210 (+) True G43337
TU51269 lncRNA downstream 118343 9526861 ~ 9527159 (+) True G43360
TU51332 lncRNA downstream 260093 9668611 ~ 9671740 (+) True G43422
TU51561 lncRNA downstream 463028 9871546 ~ 9871819 (+) True G43615
XM_026933348.2 mRNA upstream 44022 9316791 ~ 9338616 (+) True rgs17
XM_026938999.2 mRNA upstream 171345 9152330 ~ 9211293 (+) False phactr2
XM_026945162.2 mRNA downstream 12548 9421066 ~ 9487539 (+) True prim2
XM_026938626.2 mRNA downstream 235291 9643809 ~ 9666593 (+) True si:dkey-103j14.5
XM_026944483.2 mRNA downstream 331272 9739790 ~ 9745528 (+) True kifbp
XM_034302989.1 mRNA downstream 355115 9763633 ~ 9772357 (+) True vps26a
XM_034302919.1 mRNA downstream 365414 9773932 ~ 9783035 (+) False supv3l1
trnak-cuu other upstream 912942 8469624 ~ 8469696 (+) False trnak-cuu
TU50445 other upstream 916326 8465747 ~ 8466312 (+) True G42685
XR_003404394.2 other upstream 1716605 7649198 ~ 7666033 (+) False naa15b
TU49753 other upstream 2161615 7203950 ~ 7221023 (+) True G42075
TU48562 other upstream 4040888 5318534 ~ 5341750 (+) True G41047
TU52056 other downstream 1143741 10552259 ~ 10558295 (+) True sprn
XR_004577889.1 other downstream 1186056 10594574 ~ 10608704 (+) False LOC113543929
XR_004577793.1 other downstream 1691075 11099593 ~ 11171114 (+) False dntt
trnag-ccc other downstream 2182817 11591335 ~ 11591405 (+) True trnag-ccc
XR_003404598.2 other downstream 2274346 11682864 ~ 11726772 (+) False LOC113545306

Expression Profile