RNA id: XM_034303009.1


Basic Information

Item Value
RNA id XM_034303009.1
length 4479
RNA type mRNA
GC content 0.47
exon number 6
gene id lzts2a
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 19065033 ~ 19114569 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACGGGGCTCCCGTTGTGCTGCTGCTCCGCCACTCCAGAGAAGAGGAGCGAGCTTTGACTGAAGCAGCTGCACTGAAAACACGCTCAGGTTGTGTTGTTCTGCGGTGTTGTCGAAGCGTCCCTGTAGCATGTGGTTTGCGTGAAGAGAAGACTGAGACTGTGGTGGTATTCCGGGGATGTGTAAACTGTCCTCCTGCCCTGAGTCTCATCAGCCTGTAAGAGCTGAAGTGCAACAAGagtgtgtgtattgggCGCACAGTCGCCATGGCTTTGGTTCAGGCACTGCCCGTGCCCTCTGATCACGCACAGTCCAGTGTTGATATTCAGCAGTGCCACCCGGTATCGCACTCCCCACCCACAGGCGCCATGGGCTCTGTCAGCAGCCTTATCTCTGGACGCACTTACCAGGAACGCCACTGCCGCGCTGTCAGTGACTTCAGTGCCAGGCTCCGCAAGCCTTTGCCTGCCACCAGCTGTTTTCGGCAGCAGGAGGGCACACTGCGCAGGGCAGGCTCTCAGGAGGAGCTCCTCGACAACCAGCCTCCTCTGCCTATCAAGAACAAACCCACTACCCTCATGACTGCCGGCAATGGCAACTATGGATACATGAGTGATGAAGTGGTGGGTGACTGGAATGATAACCATGTCAAAGTGGGCAGCCCATGCAGTGACACAGAAGAAACACAGGACAACCGAGGACCTGTGAACAGTACCAACATCGGAGGCCCTCCACCCAAACTCATCCCTGTCTCGGGCAAGCTGGAgaaaAATATGGAGAAAGTCGTAATCCGACCAACCGCCTTCAAGCCTGTCGTACCCAAGAACCGCAACTCAGTGCAGTACCTTTCCCCACGGCCAGGAGGCAGTCTTTCTGAGAGCCACGGAAGCCTCAACCTCTTACTTCCAGGAGGAGCGGGGATGCTGtgcacagagaaacacaatTCGTACAGTGGTGGCCGCAACGCTCGCAACAGTCAGACTTGCAGCATGTCAGACTCTGGCCGCAATTCACTCTCCAGCCTGCCCACATACAGCAGTACAGCCTGCAGCCTGGTGCAGAGCGAGGGACTGTCCACAAGCACAGATTCCACACGGCCCACTGGAGGACACGGCCACACTAACTCAGACAGTGGCCGCTCCTCATCCAGCAAGAGCACAGGCCAGCCACTCTCAGACAGTGGATCATGTGGGCGTTCCCCTGCGCCCCCAGAGGGTTATGAGAGCATTATTCGTGAGCTGGAGgaaaagctgagagagagagacttggaGCTGCAGCAGCTCCGAGACAACCTGGATGAGAATGAGGCAGCCATCTGCCAGGTGTACGAGGAGAAGCAAAAACGCTGTGAGCAGGAGATGGAGGAGCTTAGGCAAAGCTGTGCAACCAAGATGAAGCAGGTGCAGCAGAAAGCACAACGGGCCCAACAGGTGCTGCAGCTGCAGGTCTTCCAGCTCCAAcaggagaagaagaagctgCAAGAGGATTTCTCACAGCTGCTGCAGGAGCGAGAGACACTGGAGAAGAGATGTGCCTCCATTGAAAGGGAGCAGAACCAGCTAGGCCCCCGTCTGGAGGAGACCAAGTGGGAGGTGTGTCAAAAGTCTGGCGAGATCTCCCTGCTgaagcagcagctgaaggatGTGCAGGCTGACCTGGGCCAGAAGGCAGCTGAGATTGTGGCCCTGAAGGCCCAGCTGCGAGAGGCTCGCTCTGAGCTGCAGGCCAGCCAGGCGCGCTCACATGAGGCTCAGGCAGCAGCACGAACTCGCACGCTCGAACTGGAAGTATGTGAGAACGAGCTGCAGCGCCGCAAGAGCGAGGCTGAGCTACTACGTGAGAAACTGGGCCGACTTGAAATGGAGTCAACCCGACTCAGAGACGTGTTGGCATTGCCCAGCAGCAAGGGTCAGTGCATGAGCCTGCCTCTGCCTCAGAGCCGTGTTGGAGGTGGCCTCAATCAAGTCCACAGCCCTGCTTTCCGGGAGGTAGTGGAGCCGCTGCCATCATACGAAAGTGATGTGACCAGGGTGCAGCAGCAGAGTACAGATGCTCTGCATAGTCTGCACTTGCAAGTAGAGCAGCTGCGCACTGAGCTGGTGTTGGAGAGGAGGCATGGACAGGAGCAGCTGGACGCCTTCGATGAGGAGCGCCGTGTCTGGCAGGAGGAGAAAGACAAGGTGATCCGCTACCAGAAGCAGCTACAACAGAACTACATCCAGATGTACCGCCGCAACCGGGAGCTGGAGCGTGTGATGAGGGAGCTGAGCCTAGAGCTAGAGAACAGGGACATGGAGGAGTTTGACATGCGCCATGACATGCGATTTGAGGAAATCGCCGCCACCGAGATCTAACACACATTCAGATTGTTCTCAATTGCTCACTGATCACCAGAGCACTTCCTCAGAATCTAACCAGGGTGAATATGCAGCCTAGACAGTAGTACTTCCGAAACATCCTGTTGTGTGACAGTTGCAATTGTCCTTTCTACACAGACGTGTGAATCTGGGGAAAACATTTAGATGGAGAAAAGAGGGTTTTTGTGAAAGAGTTCCTGAATATAATGAATGTCTGCTTTGATGGATTTCAGTCGGAATATGGAGCTCCTGTTATGTGATGGACTGATATCATGTGCTGTGTTTAGACACAGTAAAGGCACTAATGGGTGAGGAGCACCTGCACTAATGGACTCTCCTCCACTTCTTACTAtcagcattaatattaatgtaactcTAATGCAGCATGGTCAGGTTCTGCAGAGTTTAAGTGCATTGTCATGTCACTCAATCTGCtttcagtgtgttcagtctTGGAGTTGTTCTTATCAGtaagtaagacaaaaaaaaaaaacagcttttgtaTAGTGGCTGTTTTCATGTCAGGGTGGAACACAAAGACAGAGAATAACATCTGTTCTATCTGTCCTCAGAGCTCACTTTGTGCTCAGCACCTCAATACTAATCACTTTATGTAGAAGTActatttttttatgatgatgAAATTTGATATATTGTCTTTTTTCATCTTCCTTCATAGATTGCACAATGCACAATATTGCGATGCACACAACAGAGTGTGAAAAGCATGTGTGCATGATACAGTAATATTCTGTCATCAGGCTGTCTGGTGATCAGATTTATAATGATCTCTGTGGAGCTCACACAAGTTAAATATGCTCTAGTCAGCAATGTCTCCACTCAAAGTGGGCGGAGCCAATGCTCTCATTAGCAGCATAGACAGTACAATGTATTCATAGATCTCAATTTAGATTTGCCTCCAGCTTCTGAAATCCTAATAAAGAAAATAGTCACATAGGCGGggatatacacagtatatacacaatatacactatTTTTTGTTATTACAGAACAAACTCTTTAAAATATGTAGGAatggaatatattttatatatttttatatgcatatatatagtGACTTAGCCTATTTTGTGGTAACGATTCAACAGTTTTCTATCTCATACACTTTAAGAGGTAACCCAGTGGAGTCAATTGCCATGAGCTTTTCATAAGGCACTTTAGAGTGACTGCTTATATTTCCACAGTGTTGCTATGTAGATTTCAGGACTAGTAGGAAATTACAGTCTGTTATGACTTTTGGAAATTTGGAAACATTGTTTTAAGAATCATCTACCAAGTGCCAGACACTGCCTGACAGTCATTACTAATTTAGCATTCTCCAACTTCTTGCAACGATGATTCGTATCACTTCCCTCCCCCATTTGTATTATTAGGCAAATCATTCTTACTGATTATAAGCTGAATCTTACTGCTCACTGCAACTGATTCTCCATCAGTCAACTGTAGCAAAGTTGCTTCACATGCATCACagttattatgtttatattatctCTGTTACAAACTATTTGAAGCCAAATAGCAGTATTAATCAAAAGGTCTGGACATTTTTTCTTCTGGTCAAATCATTTCCATAAAACCTTTCATTTACTGAATTCATGTGTTAGTCATCATATAAATCTAGTTCTACATCCCCTAGAGATCTGTTGCACCAGAGCAGCACAGCGATAACATGAGGAGTGATACAAGCCCTTTAATCAATAGCCTAGCATACTTCAATAGCCTAGCATTCTCTCCCTGATCAGACTGTTTGCTCTCTTATATGTCTGTTACATGGTTTGTGTATACAGTCAACGGTCTTCCTTTATTCCcagtgttttttgttcttcCATTGAATACTATTTCATACCATGACTGAAACACTTGTAAATATTCCTAGTATTGTATTCTAAGTTTTATGCATAATATCTCTGTCAAAGGTGTAGCCACTGGGAATAGACCAAAGCAAAGTAACATAAggtatttgttttattctgtcttttattcatgtttgtttcgcgtgtgttttttgtcatttcatgtTTGTTGTCACTTGTATATTATCATGCTGTACATTTCCTGCAAAAAGCAATACAatgtttttgattaaaaataagtCACAAGTCA

Function

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0051168 nuclear export biological_process
GO:0000910 cytokinesis biological_process
GO:0030513 positive regulation of BMP signaling pathway biological_process
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0051255 spindle midzone assembly biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0051013 microtubule severing biological_process
GO:0060026 convergent extension biological_process
GO:0005813 centrosome cellular_component
GO:0030496 midbody cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008013 beta-catenin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58001 lncRNA downstream 12282 19052527 ~ 19052751 (-) True G49053
TU57913 lncRNA downstream 95237 18969591 ~ 18969796 (-) True G48975
TU57908 lncRNA downstream 107574 18957157 ~ 18957459 (-) True G48970
TU57886 lncRNA downstream 135531 18928182 ~ 18929502 (-) True G48954
TU57878 lncRNA downstream 174221 18890563 ~ 18890812 (-) True G48947
TU58066 lncRNA upstream 75758 19190327 ~ 19190615 (-) True G49108
TU58155 lncRNA upstream 137024 19251593 ~ 19251863 (-) True G49184
TU58193 lncRNA upstream 286095 19400664 ~ 19400863 (-) True G49215
TU58214 lncRNA upstream 313177 19427746 ~ 19428725 (-) True G49232
TU58488 lncRNA upstream 574023 19688592 ~ 19688877 (-) True G49481
XM_026934553.2 mRNA downstream 20712 19036992 ~ 19044321 (-) True sfxn3
XM_026932754.2 mRNA downstream 46124 19011981 ~ 19018909 (-) True mat1a
XM_026937044.2 mRNA downstream 161513 18898163 ~ 18903520 (-) True si:dkey-228d14.5
XM_034302735.1 mRNA downstream 162030 18898163 ~ 18903003 (-) False si:dkey-228d14.5
XM_026932472.2 mRNA downstream 212926 18845152 ~ 18852107 (-) True slc25a16
XM_034302895.1 mRNA upstream 23926 19138495 ~ 19171153 (-) True sema4ga
XM_026941939.2 mRNA upstream 58671 19173240 ~ 19185983 (-) True slf2
XM_034303029.1 mRNA upstream 58671 19173240 ~ 19185975 (-) False slf2
XM_026940534.2 mRNA upstream 88543 19203112 ~ 19214161 (-) False wdr32
XM_026940524.2 mRNA upstream 88543 19203112 ~ 19214160 (-) True wdr32
TU57664 other downstream 451632 18330368 ~ 18613401 (-) True lrmda
TU56951 other downstream 1403649 17657581 ~ 17661384 (-) False col13a1
XR_004577786.1 other downstream 1490611 17562332 ~ 17574422 (-) False LOC113538666
XR_004577787.1 other downstream 1490611 17562332 ~ 17574422 (-) False LOC113538666
TU56907 other downstream 1588972 17471187 ~ 17476061 (-) True cisd1
TU58169 other upstream 201918 19316487 ~ 19319733 (-) True G49195
XR_004577815.1 other upstream 521269 19635838 ~ 19667661 (-) False atrn
TU58944 other upstream 1243365 20357934 ~ 20369097 (-) False gng2
TU58943 other upstream 1243419 20357988 ~ 20369097 (-) False gng2
TU58946 other upstream 1243419 20357988 ~ 20369429 (-) False gng2

Expression Profile