RNA id: XM_034302584.1


Basic Information

Item Value
RNA id XM_034302584.1
length 1947
RNA type mRNA
GC content 0.47
exon number 6
gene id ccnj
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 11037969 ~ 11041301 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGAGGGGTTCATGTCGCCTTCCCTGCCCTAGTACACCAGATTCTATCCCCTTCCTACCACAGCTCAGGTTTCAGGTTAGCATGTGGTCGTAGAGCTTGTGAACATGTTCACATGGAAGAGTTCAGCAGAGTAATCAAGGGCCTCTACTAGAGCTCCAGCACACTGtcgacatgttttttttttttttcatttcctatACAGTAAATATGAGTTGGTAATAAACCTAAGCGAAATATGCAGGATATTAACTTTTGTATAAGGTATTATTACATACAGCACGCAGGCTTTGCTAACATTTCATCAAGCCTCGACTGGATTACAAGTCTGGCTCCTCGGTTGCTGACTCCGTGACGTCAGTGCAAGCCTGCTCCTGATTGGTTGAGCACTGAAGTTTGGCGATTCATCCTGACACTTTTCACCCAATGGAGCTGGAGGGCCAGTGGTGGAAAGGCCAACTGGCTGGAGATATTTACCATGCTCTGCGCTACAAGGAGCTGAGGTTGCCTGTTTACAAAGGTCAGTCCCCACAACTGAACCTTAGGCGCTACTTTGCAGACCTCATAGCCATAGTGAGCAACCGGTTCAGGCTGTGTCCTGCAGCTAGACACCTGGCTGTGTATCTGCTGGACCTCTTCATGGACCACTATGACATCTCTGTGCAGCAGCTCCACATGGTGGCTCTTTCGTGCCTACTTTTGGCTAGTAAatttgaagagagagaggacagagtaCCTAAGCTGGAAACCCTCAACAGCCTCACTTGTATGAGCTCCATGAACCTGGTGTTGACCAAACAGGGCCTATTGCACATGGAGCTGCTGCTCCTTGAGACCTTCCACTGGAACCTCTACTTACCCACAGCTGCCCACTTTATCGAGTATTACCTGTCAATTGCTGTCAGTGAAACAGATCTACATGATGGCTGGCCAATGGCTTGCTTAGAGAAGACAATGTTGTATATGAACAAGTATGCAGATTACTTTCTGGAAGTCTCTTTGCAAGACCATGCATTTCTGCGATTTGCGCCGTCATTAGTAGCTGCTGCCTGTGTGGCTTCATCTCGAGTAATCCTGCATTTGGCTCCGACCTGGCCGCCTCGTCTACAGCGCCTGTCCGCCTACGCCTGGGAGCAGTTACTGCCCTGCGTGGAGAGACTGCTTCTTGCTCATGATAGTGATGTAAAGGAAGCCAACAAGCAGAAGTGCCAGCTACAGCAGCCTGGTGCACAGCCAGGGCAGGCTGTGTTCCCAGCACAAAGCCAGAGTGCCACAGTAGCCCAGTACGTCCACAGACCGGCCTTGCAATATGGCCAGCAGAGCTGCCCACCTGTGCTGGTCTCGGCCCACGCCTCAAGTGCCTACCTGTGCCATAGTAGTTCACTGCAGGTGTCTAGTGGCCCGTCACATGGGCAAGCACAGCCACAGACTATCTCTCTACCTCTGGATGCTAAGATGAAGATGCCGAACAGGTCGTACCAGGTGAACTCCATTTACTCATGCACAGCACCGTGCTTCAACAGGTGATGGCAGCTGGACACCGGCTACAAACTGAGCGGTTAATTATATAAAAGACATTTACTTGAGTATAAAGCAATCTATGAAAATGATGGTAATGCCAACCTTCGCATCTCAAGCTGGATAATTCAAGCTCCTGAATcctgttttaataattaaaaaaaaaaaaaaaacactgaagtaaTGGACATTgtgttaaatactgtaataactGAACAACGAAGTGCAAAGTGAGCAAGATGTGCAATCCTGTGAGACTTATTTCATTCAAATTCCTTCCATGTGaagtgtttgttttcatttgtttgtggttttttttttttttttttttttttttgcactgagaacagtattttttatattcttgcTGCTTGAGAAGATGGTGTGATTTTTATCAGCACCAGCAAGCTTATGCCAGTGATAACCAGGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52327 lncRNA downstream 57674 10978646 ~ 10980295 (-) True G44275
TU52326 lncRNA downstream 59546 10974819 ~ 10978423 (-) True G44274
TU52323 lncRNA downstream 81477 10953505 ~ 10956492 (-) True G44271
TU52312 lncRNA downstream 112711 10922309 ~ 10925258 (-) True G44262
TU52216 lncRNA downstream 220677 10816672 ~ 10817292 (-) True G44173
TU52647 lncRNA upstream 345905 11387206 ~ 11387946 (-) True G44582
TU52906 lncRNA upstream 798151 11839452 ~ 11839822 (-) True G44818
TU52909 lncRNA upstream 870909 11912210 ~ 11914029 (-) True G44820
TU52938 lncRNA upstream 966525 12007826 ~ 12008029 (-) True G44848
TU52939 lncRNA upstream 969630 12010931 ~ 12021468 (-) False pwwp2b
XM_026939537.2 mRNA downstream 27603 10982594 ~ 11010366 (-) True btaf1
XM_026932931.2 mRNA downstream 110741 10894351 ~ 10927228 (-) True march5
XM_034302753.1 mRNA downstream 175859 10856138 ~ 10862110 (-) True dennd10
XM_034302754.1 mRNA downstream 176555 10856138 ~ 10861414 (-) False dennd10
XM_026945155.2 mRNA downstream 188256 10845031 ~ 10849713 (-) True prdx3
XM_026943244.2 mRNA upstream 13467 11054768 ~ 11094954 (-) False blnk
XM_026943236.2 mRNA upstream 13467 11054768 ~ 11094954 (-) False blnk
XM_026943228.2 mRNA upstream 13467 11054768 ~ 11094954 (-) True blnk
XM_026943258.2 mRNA upstream 13467 11054768 ~ 11075267 (-) False blnk
XM_026943251.2 mRNA upstream 13467 11054768 ~ 11075266 (-) False blnk
TU51003 other downstream 1809085 9224881 ~ 9228884 (-) True sf3b5
TU50809 other downstream 2184175 8801243 ~ 8853794 (-) True G42967
TU50810 other downstream 2184175 8849109 ~ 8853794 (-) False G42967
XR_003403913.2 other downstream 2254171 8755869 ~ 8783798 (-) False zdhhc5a
trnae-cuc_7 other downstream 2567540 8470358 ~ 8470429 (-) True trnae-cuc_7
trnag-gcc_1 other upstream 667313 11708614 ~ 11708684 (-) True trnag-gcc_1
TU53378 other upstream 1103594 12144895 ~ 12152506 (-) False tmem254
TU53492 other upstream 1483335 12524636 ~ 12534075 (-) False LOC113537616
TU53486 other upstream 1490142 12531443 ~ 12534075 (-) False LOC113537616
TU53537 other upstream 1590512 12631813 ~ 12633015 (-) False LOC113539135

Expression Profile