RNA id: XM_026943082.2


Basic Information

Item Value
RNA id XM_026943082.2
length 2890
RNA type mRNA
GC content 0.47
exon number 20
gene id pald1b
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 15799228 ~ 15812772 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTGTGTGAGTTGAAGAGGTGGTGAGGATAAGTACTTGCCCACCTCCCTTCTCTCTGTGTAAACTAGCCTCTGCCTTGCTGCTGTAGTCCTGCATTCAGGCCAGACCACAtgactgaggacaactgagaaAGGATCCTTACAGAGGGGTTAGTTCTGAGGGGATTCAAGATGCAAGACAACTTAGACAGGATTTTTTTCTATGCTTCATTCTCCTCTATACATGAACACTGAAAATCTCATGGTCATATAAGTGAAGAAGTAATTAGCTCTGTGTGGATTATGGGCACTACTGCTAGTGCAGGGTCCCAGCCTGCATCAGTGACTCCTACACACCACATCGATCACCAAGCTGGTGATATAGCTGAAGACAAGCGCTCcatgagcagcagctcttcACAGGCACTGAATATTCCCAACAGCAAACCCAAGTCCATTATCACAAACAAGGTGGCCCCCGTTGTCATCACGTATAACTGCAGGGAAGAGTTTCAAATTCATGATAGTATCCTCTCAGCTAACTACTCTGTGGGAAAAATATCTGACACACTACCTGAGCATTACCTAGTGCTGGGGGAGTTTTTTATGGTGCAGGATGTGAATAGTAGAGCAGATGTCTTAAACACTACAGGAAGCTACGGGGCCCCTAACTTCCGGAAAGCCAAGGAAAACTACCCTCTCTTTGGAATGGGCCAGGCCAGCCTGAATGGCTTCAAACAGGTCCTCCAGAGGTTAGAGAGTGAAGCTTATGAGGAAGTGATATTCTTCTGTGTGCGGGAAGAGCCTATTGTCTTCCTGCGTCTGGATAAAGACTTTATTCCATACACTCCCAGGAGGAAAGAGAACCTCCATGAGAACCTACATGACCTGAGAAGTGTGGTCAGAGCAGAGCAGCTGGAGCTGTCCATCAGAAAAGAGCTGTGTGACTTTGCTAAACTCTGTGAGAACATCATCTATGTTTATAATGACATTGAGAACTTCAAAGATGAGCCGCAGCATGTTAGGATTGTGTCTGAGGAGGACATACTTGTAACCGAGGAGGTTTACAAAAGACCACAGTTCAATTTGCCTTCATACAGATATTACAGACTCCCGCTTCCTAAGGAGGGGGCACCAGTGGAGGAGGATTTTGATGAATTTGTAAATGTGCTTAGGAAAAGCCCTAGCTTGTCAGTATTGCGTGATAGCTCCAGGCCTCTGCCTGCACTGCTGTTCAGCTGCCAGGTGGGGGTGGGACGAACCAACCTCGGCCTTATCCTTGGTGCACTAGTCTTTCACCATCTACATGGGGCACCGTATAACACCAGGGAAGAGGACACATCAGTCAAGCAGCAGCCAGAATTTCAAGCCATTCAGAATCTGATCAGTCGCCTCCCCAAAGGTCAACAAGTACTTGATGAGGTCAATAGAGCTATTGAAATGTGTTCAGAAATGCACAACATCAAAGATgcaatatatgaaaataaaagaaaaatggaagcAATTTGTGAGGATTATCAGATACAAGGAAGCAGTACAAAGACTTATTTCTTGCAAAAGACCCTGCAGAATCTTGAGTCTTATTTCTACTTAATAGTGTTCAATGCTTATCTTCATGATCAGTATCCTCAGATGTTTGCCCAGAGTTTCAGTCAGTGgctgtgtgtgaatgcatggaTCTACAGGCTGCTTGGCAGTATGAACCGTTCTGAGCTCTTAGCACCAGCCAGCCTTGTCACTGATGGCACCAGGATACTGGTGGCCAGTGAGTTTTTGGCACCAGACGTACTTGGTACAGCCAAGGAAATGAGGGTGGCCAACTTCAGACGAGTTCTTAAGACAGTTGTGTATGGCATGGCCCAGCCAAGCTCTGAGGCTGTTTCTGTTGTGTTATCTTACCTCACGGATGAGCGACGGAGGCATTCCAGCATTGTATGGGTGAATCTGCAAGAGGAACTGATTCTGGAAGGTAATGGGCAGATGTTCACATCTCGAGAACCAGGCTGTCTGGAGCAACCAATCCAAGTGTATGTGCAGAACCCACAACAGCATGAGACACTGGAGCTGGCACTAAAAGAGGACATTCTCAGGTGTGAGAAGTGGCTTGAGGTAGTTCTTGAACAGGAGAAGCAGATGAGAATGCTGAAAAGCTGTCATACTGTCCAGGAAATCTTTGCCAAGCAAAAGAACATTTACGCAGGCCTCACATATCAGCGTATCCCTCTTACTGAATGCTGTGCTCCAAAGGAGGAGTTTTTTGACCAGCTGTTAGAGGCCATGAAGTGCAGTCTTGGGGAGGATCCCAGCTCAGCTTTTATCTTCAACTGCAGTGATGGGAAAGACCGAACCACTACTGCCATGGTCATCGCCACACTTACTCTCTGGCACTTCAACGGCTTTCCTGACTGTGTGGATGAAGAAATTGTAAGTGTCCCAGATGCAAAGTACACAAAAGGAGAGTTTGAGGTGGTGATGCAGGTGGTCAGACTGCTACCTGATGGTCACCGTATGAAAAGAGAGGTGGACATGGCCCTAGACGTTGTCAGTGAGACGATGACTCCCATGCATTACCACTTACGGGAGATCATTATATGCTCGTATAAACAGATCAAAAGAGCAAAATCAGAGGCTGAACTGCAGCAGTTACGTCTGAGAAGCCTGCAGTACCTGGAGCGCTATATTTACCTCATCCTATTCAACAGCTACCTTCACCTGGAGAAGAAAGACTCCTGGAGACGACCGTTCAGCCTGTGGATGCACCAGGTGGCAGCACGAGCCGGTATCTACGGCATCCTCAACCAGCTGGGCTTCCCTGAGTTTGAGGCACCTACGAGTTGTCCACTGGCCAGACTACGCTACCGCTGGAGACAGCATAGTGCTTATTCACTGCCCATCCGTGGAGAGCTCATCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55615 lncRNA upstream 83705 15711137 ~ 15715524 (+) True G47043
TU55393 lncRNA upstream 325359 15473201 ~ 15473870 (+) True G46849
TU55373 lncRNA upstream 379587 15419029 ~ 15419642 (+) True G46833
TU55286 lncRNA upstream 714919 15079813 ~ 15084310 (+) True G46765
TU55651 lncRNA downstream 81101 15893581 ~ 15896079 (+) True G47071
TU55664 lncRNA downstream 220824 16033304 ~ 16035339 (+) True G47084
TU55821 lncRNA downstream 291356 16103836 ~ 16104050 (+) True G47224
TU55827 lncRNA downstream 312186 16124666 ~ 16134002 (+) True cxcl12a
TU55863 lncRNA downstream 380215 16192695 ~ 16203524 (+) True G47265
XM_026940901.2 mRNA upstream 2038 15793406 ~ 15797191 (+) True eif4ebp2
XM_026943827.2 mRNA upstream 25526 15746453 ~ 15773703 (+) True spock2
XM_026943836.2 mRNA upstream 25526 15746453 ~ 15773703 (+) False spock2
XM_026943305.2 mRNA upstream 68528 15722881 ~ 15730701 (+) True dnajb12a
XM_026933724.2 mRNA upstream 121780 15673435 ~ 15677449 (+) True cuedc2
XM_026945125.2 mRNA downstream 8613 15821093 ~ 15827467 (+) True rps24
XM_034302830.1 mRNA downstream 8613 15821093 ~ 15827467 (+) False rps24
XM_034302829.1 mRNA downstream 8613 15821093 ~ 15827408 (+) False rps24
XM_026935835.2 mRNA downstream 60837 15873317 ~ 15986353 (+) False zmiz1a
XM_026935804.2 mRNA downstream 60838 15873318 ~ 15986353 (+) True zmiz1a
TU55629 other upstream 2025 15793428 ~ 15797204 (+) False eif4ebp2
XR_004577898.1 other upstream 1431783 14361367 ~ 14367446 (+) False cgas
XR_003404567.2 other upstream 1516061 14213402 ~ 14283168 (+) False slc24a3
TU54033 other upstream 2298183 13498092 ~ 13501046 (+) False pcbd1
TU53738 other upstream 2765981 13032279 ~ 13033248 (+) False si:ch211-223p8.8
XR_003404341.2 other downstream 258234 16070714 ~ 16073067 (+) True cxcl18a.1
TU55689 other downstream 258279 16070759 ~ 16071920 (+) False cxcl18a.1
TU55884 other downstream 422055 16234535 ~ 16236648 (+) False lrrc18a
XR_003403773.2 other downstream 3528870 19341350 ~ 19356098 (+) True sfxn5a
XR_004577568.1 other downstream 3528870 19341350 ~ 19356098 (+) False sfxn5a

Expression Profile