RNA id: XM_026943156.2


Basic Information

Item Value
RNA id XM_026943156.2
length 2592
RNA type mRNA
GC content 0.42
exon number 4
gene id prph2b
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 22244109 ~ 22265419 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTCTGAGATATTTCTATGGAGAGGGAGAAAACGGGGATCGCGGTAAAatcagagaggaagagagactcATTATCCATCCTGCCACATGAAAGCACACTGTTCTCTTTTGCCCTGTGCAGCGGATTTGGACCACCTATCTACATCATGCTGTATGTACATGATGGAGGATGCAATAGGCTAAGGTTCCTCAGAGTAACTCTCCTCCCACTGCGCTGTTTAGCAGGAGAAACTAAAGCAACTAACCAATTACACAGAAAGATGAGGGATTACAACCCAAGGTTCATCTCCTGAAAATGAGATCAAGGCTGATTAGAAGGGTTTAGCATGACGTAGAGCAACACACTGCTTCAATCACTTGATGCCTCAACTGGTCACCTCTTTTTTTCAGGAAGAGGAACTGTTACATTTTGGtcaattttatgcaaaatttGGTCCTTGGTAGAGATCTCTACTTGCTGACACTATGGATCTCCATGAGTTCTGGGTGGTCagaatgaagatgaagaggGGAATTATTGGCATGGCATCTGTGGTAGCACCATTCTGGaatagaaaacaaaactaaGCTGGTGAAGTgcaatttttttgaaaacatttttgataGTGAGAACACGTAATCTTCCACTAAAGACTGAATATTTGACAGATaacaaatcaagaaaaaaacatatggCTTTGATGGTTATAAAATTTGACTTGGCCAAGCGAATCAAACTGGCCCAGGGACTGTGGCTCCTGTACTGGCTCGCGGTTATGGGTGGGATCCTCATCTTCAGCATGGGGCTTTTCTTCAAGATTGAACTTCGCAAAAGGAGTGAGATGATGGACAATAATGAGAGTCATTTTGTACCCAACCTGCTCATCCTGGTAGGCCTTGCTGCCTGCGGCATCAATGTTTTCGGTGGCAAAGTGTGCCATGACTCACTTGATTCAGCCAAGTTTTCCAAGTGGAAGCCCATGGTGAAGAATTACCTGTGCGGATGCTTTGCCTTCTCcatcatcctcttcatcatAGCTCTGCTTTGCTTCCTGATGCAGATCTCTCTACATTTTGCCCTGGCTGAAGGTCTAAAAAATGGGATGAAATATTACAAAGACACAGACACCCCAGGACGGTGCTTCATGAAGAGGACGCTGGACATGACCCAGATTGAGTTCCGTTGCTGTGGCAACAACAACTTTAGGGACTGGTTTGAGATCCAGTGGGTTAGCAACCGCTACCTGGACTTCAGCAATGATGAGGTCAAAGATCGTATCACAAGCAACGTAGAAGGTAAATACCTTATGGACAGCGTTCCCTTTAGCTGTTGCAACCCTGGTTCTCCACGGCCCTGCATCCAGCACCATCTGACCAATAACTCAGCTCACTATGACTACGACCATCACACCGAAGAACTAAACATCTGGACTCGAGGCTGCCGTGAAGCCCTGGTCTCCTACTATGGGGGGATGATGAACAGCATTGGGGCTTTTGTGCTGCTAGTCATGGTCTTGCAGGCTGCAGATATGGTGGGACTGAAATACCTGACAACCTCTTTGGAGACCCTGACAAACCCAGAGAACCCCGAGAGTGAGAGTGAAGGTTGGCTGCTGGAAAAGAGTGTGAAAGAGACTGTATCTGAGGTCCTGCAGAAGATAACATCACTTGGCAAAAAGAACCAGGTGGAGGGGgctgaggctgctgccagtgcCAGCTgagcagctcacacacacacaaacacacacctgggaCTGAAACCATCCTATAAGCAGAATCAAAGATTCTACAAACAAATTCCTACAAACATTGACACGCATTCACTTAAGCACTCGTAAATATATTGTACTGATGGGTTGTACAACCAGAAGTGAACAAAAGTAACAGATCCTTAATGAACCTTTAAATGCATTGAGCACTaactgaaaaaatgtaaatgtgaatgttcATATTgacatgtaaatataaatttaaataacataaaatggagtttaattttaaaaagatgtatatttgttgtggggaaaaaatgaaggtCAGAGAATATTTAGGATAATATTTATGTTGTCTCTTGCCCCCAGACAATCAGGGTTCAGGAAGGGCCAAAAACATAGTGGTGATGACCCTCACATGACCTTGTCCAAATCCAAAGGGCTAACACCATTAAGGCACATATCCTTTTGACcttttattgcattattataatataataatttttttggggggggggccTTTCAACAGCTAGTGAAGTAAATATGGCCTCTGACTGGTGTCCAGGTTTTTCTCAAACACTGCTGTTTGAGTAAATGTGCAACACTAGCACAGCTTGACAATTTAAATCAGGATCatgatgaaattaattaattataaaggAATGAATGATGCAGCATTCCCATCAGTGTGTGATCCTCTTGGGATAAGTATCTCAACGAGGTATAGAAGTAAATGACATATCTGAGATCTGAGCTAGACTTTGAGGAAGgtgaaaaacctttttttcttttttttttacatgatttcgATAGTTAAAAATTTAAAGCAGAATATTTGACAGCTTACTCTTTGGTCAAATCATTACCAGTTGTGTTTATGTTGTATTTCGTGTGACCACATT

Function

GO:

id name namespace
GO:0007601 visual perception biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17343 PRPH2, TSPAN22; peripherin-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003404546.2 lncRNA upstream 14661 22227445 ~ 22229448 (+) True LOC113544795
TU60131 lncRNA upstream 202957 22035482 ~ 22041152 (+) True G50880
TU60136 lncRNA upstream 202957 22035482 ~ 22041152 (+) False G50880
TU60140 lncRNA upstream 202957 22035482 ~ 22041152 (+) False G50880
TU60120 lncRNA upstream 220298 22020330 ~ 22023811 (+) False wu:fj16a03
TU60200 lncRNA downstream 1278 22266697 ~ 22337044 (+) False G50929
TU60202 lncRNA downstream 1278 22266697 ~ 22268508 (+) True G50929
TU60203 lncRNA downstream 1278 22266697 ~ 22268508 (+) False G50929
TU60204 lncRNA downstream 1278 22266697 ~ 22268508 (+) False G50929
TU60216 lncRNA downstream 20019 22285438 ~ 22288102 (+) True G50938
XM_034302562.1 mRNA upstream 220549 22020322 ~ 22023560 (+) False wu:fj16a03
XM_026932110.2 mRNA upstream 273149 21967741 ~ 21970960 (+) True LOC113537563
XM_026932766.2 mRNA upstream 283710 21954905 ~ 21960399 (+) True LOC113537982
XM_026932775.2 mRNA upstream 283710 21954905 ~ 21960399 (+) False LOC113537982
XM_026933215.2 mRNA upstream 326441 21914549 ~ 21917668 (+) True hcar1-3
XM_034302654.1 mRNA downstream 219891 22485310 ~ 22552752 (+) False LOC113538739
XM_026934084.2 mRNA downstream 219892 22485311 ~ 22546038 (+) False LOC113538739
XM_026934075.2 mRNA downstream 219893 22485312 ~ 22552752 (+) False LOC113538739
XM_026934094.2 mRNA downstream 219894 22485313 ~ 22546449 (+) False LOC113538739
XM_026934066.2 mRNA downstream 219894 22485313 ~ 22546038 (+) False LOC113538739
TU60121 other upstream 220298 22021407 ~ 22023811 (+) True wu:fj16a03
trnae-cuc_10 other upstream 1238590 21005450 ~ 21005519 (+) True trnae-cuc_10
TU59013 other upstream 1668630 20574973 ~ 20575479 (+) True G49862
XR_004577569.1 other upstream 2888011 19341350 ~ 19356098 (+) False sfxn5a
TU60615 other downstream 518909 22784328 ~ 22786505 (+) True G51271
XR_003404579.1 other downstream 848766 23114185 ~ 23115039 (+) True LOC113545030
TU60962 other downstream 1189009 23454428 ~ 23455549 (+) True G51562
TU61166 other downstream 1431613 23697032 ~ 23697294 (+) True G51749
TU61214 other downstream 1528261 23793680 ~ 23805495 (+) False slc29a3

Expression Profile