RNA id: XM_026943251.2


Basic Information

Item Value
RNA id XM_026943251.2
length 2445
RNA type mRNA
GC content 0.43
exon number 23
gene id blnk
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 11054768 ~ 11094954 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGGCTTTTTGCCAAGTCCCTCATAGCGTTAGTttagagaacacacacatcctcattCTCTCACACAGCATGGAGAAACTGAGCAAGATCACTGTTCCGGCTAGTGAGAAACTCCGGCAAATCCAAAAAATAGTTCAGGACATCAAAAAGAACGACGATAGCATTTTCAATCGATTAAAACGGTTCCAAACTGAACAAACGGCCAATATTCTCAAAACTGGCAGAAATACAATAGACAGacTAAAAAACAAAGGACCTCCAAAAGTACCTGCAAGAGACTACCCTGgTGATAACCAGGACACTGAGGAATCATCCGATTCAGAATTTGACAATGACCTGTATGAAGAACCACAGGGTGATTACAGCTATGAGCCTCCCCCTTGTGAGAGAGTCTTCACTCCTCCCCGAGTGATCAAATACACTGGAGGAGATTACCTGGACACACGTCCTGGTCCACAAACACAGACTAAACCGAAGAAGCCCTTCTTACCAACCAAACCTCGAATTCCAGAGAAGCCTAAACAAGCAGAAAAGTATGATGAGGACTATATTGATCCTGAGGATGACACAGACGATAACTATATTGACCCTTCTGAGAAAGaTCACCAAGGAATGCAATCAGGACGCTCATACAGTCCAGATGTCTATGAGATTCCTGACCAGgATAATTCTCCATCCATCAGCAGGTGCAGCCCAAAGCTACACCCCCCTGCACTACAGCTGCCCCCTAAACCAAGTCCCAGaaTTAACATTAAGAAGCAGGTTATCTGTCCAGAGCCAGAGGATGAGGATGACTATGAAATTTGTATCGACGATGACAGTTTGACAGAAGAGCAGGAGAAGAAGACTGTAGAAAACAGATGGCCATCTATCCCTGTCCCTCTGCCAAGAGATGTGAAGAATCCAAAACCACTAGTTTTCCAGAAGCCAAGCATTCCATCTAGAGACCACGAAGCTCGGGATCCAGCTCTCGCTGTGGTCTCTCCACCCACTACAGGATTTCATCTTGTAAACAGGTCTCTGCCGCGTGACAACCTCTGCCAGAAATCTCCACCAGGGAGAGGAAGCTTATCTCAGGAGGACAGTGCCACTAGGCAGCAAGAGGAGGAGGCTGGTGTGTATAAGAAGCCCTGGTACGCCAGTAACTGTGACCGTAAAACAGCAGAGGACGCACTCATCCGATCAGCCAAGGATGGTTCTTACCTGGTGAGGAAGAGCTCAGGAGTGGACGCCCTGCAGCCCTACACTTTAGTTGTATTCTACAATGGACGGGTTTACAACATCCCAGTGCGCTATATTCCCAGCACCAAACAGTACGCCCTGGGCAAGcagaagaacagagaagagCGATTCAAAACTGTCTCTGAAATCATCGAGAACCACCAAAAGAACACACTCGTGTTGGTGGACATGCAAAGCAACACAAAAGACAGCACTAGTCTGAAGCATGCTGTAAAGCCGTGACTCAATTCCACTGAGGTTCCTGCACTGTCATGATTCTCCAGAACTACCAGGAACaaacagtttggtgaaaaacTGAAGACTGGTGAAGGAAAGAATGTGTCATTTTGCTGGCATGCTACAGGCTGTGAGGATAATTTAATAGTGATCAAAAAGTAAAGTGTTGCTCATACTGACAACTGGGctgtataagtgtgtaaagtATTCGTAAATAAGCTGTATTTAATGCACTTATATTGTATACTATATTTTGCTTTATCTCAAGACAAGACAATTTGGTAAAATATTTTGAACcatttgaaacatttaattataatcAGTTTTAGTAATGATACTCAGGATGAAAGTGGAAGCTGAATTACCTTATTTCAATTGTACacatacactgcctggccaaaaaaaaggtctaaataagcaaatacttaagagcctatgattggatcattactgtagtgattaatatgtttcagatggtaacaattcttttaaccttaactgatgcagtgtgtagcttctcatttcttaaacaaacaTAGTAGATTACGTATCCCgtggtcgtggaaaagatgttactgagggataaattgttggcctgcatcaagcaaagaaaaccactaaggagattgctgaaatcactggaactgggttatgaactgtccagtgcattattaaagcctggaaggatagtagtgaaccgtcaactttacagcagaaatgtagtcggaaaaaaatcttgaatgatcgtgatcggagatgtttaaaacgcttggtgatgtcacattgtaaaaaaatcgacaggagatCTCacagctatgtttaatagtgaaagtaaaagCATTTCCACACCCACAATGttatgagaacttacaggatatggactaaacagctgtgtggccacaagaaagccatttgtcaGTGAGACTAATctgaaaaaatgacttcaatttgctagggagcataaagactggaatgtggagcaatgga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52327 lncRNA downstream 74473 10978646 ~ 10980295 (-) True G44275
TU52326 lncRNA downstream 76345 10974819 ~ 10978423 (-) True G44274
TU52323 lncRNA downstream 98276 10953505 ~ 10956492 (-) True G44271
TU52312 lncRNA downstream 129510 10922309 ~ 10925258 (-) True G44262
TU52216 lncRNA downstream 237476 10816672 ~ 10817292 (-) True G44173
TU52647 lncRNA upstream 311940 11387206 ~ 11387946 (-) True G44582
TU52906 lncRNA upstream 764186 11839452 ~ 11839822 (-) True G44818
TU52909 lncRNA upstream 836944 11912210 ~ 11914029 (-) True G44820
TU52938 lncRNA upstream 932560 12007826 ~ 12008029 (-) True G44848
TU52939 lncRNA upstream 935665 12010931 ~ 12021468 (-) False pwwp2b
XM_034302584.1 mRNA downstream 13467 11037969 ~ 11041301 (-) True ccnj
XM_034302583.1 mRNA downstream 13885 11037969 ~ 11040883 (-) False ccnj
XM_026942945.2 mRNA downstream 13910 11037969 ~ 11040858 (-) False ccnj
XM_026939537.2 mRNA downstream 44402 10982594 ~ 11010366 (-) True btaf1
XM_026932931.2 mRNA downstream 127540 10894351 ~ 10927228 (-) True march5
XM_034303002.1 mRNA upstream 247454 11322720 ~ 11324343 (-) True vent
XM_026937905.2 mRNA upstream 252363 11327629 ~ 11328847 (-) True vox
XM_034303120.1 mRNA upstream 255698 11330964 ~ 11372987 (-) False LOC113544651
XM_026943599.2 mRNA upstream 255698 11330964 ~ 11372987 (-) False LOC113544651
XM_026943590.2 mRNA upstream 255698 11330964 ~ 11372987 (-) True LOC113544651
TU51003 other downstream 1825884 9224881 ~ 9228884 (-) True sf3b5
TU50809 other downstream 2200974 8801243 ~ 8853794 (-) True G42967
TU50810 other downstream 2200974 8849109 ~ 8853794 (-) False G42967
XR_003403913.2 other downstream 2270970 8755869 ~ 8783798 (-) False zdhhc5a
trnae-cuc_7 other downstream 2584339 8470358 ~ 8470429 (-) True trnae-cuc_7
trnag-gcc_1 other upstream 633348 11708614 ~ 11708684 (-) True trnag-gcc_1
TU53378 other upstream 1069629 12144895 ~ 12152506 (-) False tmem254
TU53492 other upstream 1449370 12524636 ~ 12534075 (-) False LOC113537616
TU53486 other upstream 1456177 12531443 ~ 12534075 (-) False LOC113537616
TU53537 other upstream 1556547 12631813 ~ 12633015 (-) False LOC113539135

Expression Profile