RNA id: XM_026943267.2


Basic Information

Item Value
RNA id XM_026943267.2
length 2976
RNA type mRNA
GC content 0.43
exon number 18
gene id LOC113544434
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 15457511 ~ 15473941 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATGGCCCTGGTCTAAGACTCATCATTGGATTAGCTTTAGCTCTCCTCAGTCTAAAACAACCACCTTCAAAGAGACACCTGCTTAGATCCAACCACTGCCACTTTCCTTGGACTGTTTCAGTTTTTTAGGATGAATGTTGATAAAAGGATACTTTCACCATTTATGTTATTGGTACATTTCCAGTTTGTAGCAACACAGAGCGATTACGCACCATATTTCTATGACAATGGGCCCCAGAGTAACAACGGTAATCTGGCATTGTTCAGTCTTTCAGAGGACACGCCAAAGGGAACACATATATATGTTCTGAATGGAACTGATCCAGAGGGACAGCCCGTAAGATATGGCCTGGGCTTTGATCCAGGATCTAAAGAATACTTTAGTGTTGATCCCATATCTGGGATAGTTACTCTGGTAGAGGAACTTGACAGAGAGATACAGGATGAGATTGGGGTCCTTGTCAGTATTTCTGATGACTTTAATAAAGTAGTAGAAAAAGTGAGGGTGTTTGTGATGGATGCCAATGATGAGGAGCCACAGTTTCAGAACCTGCCCTCCATTGTGGACGTGCCAGAGagCACACCCTCTGGGAGCAGTATATTTAAAGTGCAGGCTGTGGATAGAGATACAGGCTCAGGTGGATCTGTCACCTACTTTCTTCAAAGCACTGGCCCAAACACTAAGTTTGCTATTGACCGCCACAGTGGAGTGTTAAGGATAAAAGTGGGTGAGGCTCTAGACTATGAGAGAGTGAGGACACATTTTGTTACTGTGGTGGCAAAGGATGGAGGCGGAAGTTATAATGGAAGGGAACAGGTGATGTCATCGTCTGCTACCTTGACAATTAATGTGATTGACAGTCAGGACACTCCTCCCAGTTTTGTTGGTACACCATACTTTGGCTACGTCTATGAAGTCTCTTCACTTgGATCTGAAATATTCACTGTTTTTGCCCAAGATGGAGATGTAGAAACTCCTAATCCAATTATTTATTCTCTTGAAAGTGGAGCTGATGGTGTATTTAGCATCAACAAAACAAGTGGCTGCATCACTCTCCTAGCCTATCCAGATAATTtaagaaaggaaatgtttaatatcaaGGTCAAGGCTTCAGAGGTGAATTCACAGGGAAGTGTCATGGACTTTGCTATCACCACTGTAACTATTCGAGTAATGGACCTGAACAACCACCCCCCTACCTTTTATGGTGAGAATGGCCCACAGGACACCTTTGAGTTGACCATGTATGAACATCCTCCAGAGGGAGAGATATTGAGGGGCTTGAGGATTACAGTCAATGACTCAGACCAGggcGCAAATGCAAAGTTCAACCTAAGGCTGGTGGGACCAGGTCATATGTTACGAGTGGTCCCACAGACTGTCCTTAATGAAGCTCAAGTCACTTTATTAGTAGAAGACTCCACTGCAATAGACTATGAGAAATTCCAGTTTCTGACATTCAAGATTCTTGCAGTGGAAATTGATACCCCCGAGAGATTCAGTGCCACCGCAGATATAGTCATACACTTGCTTGACACTAACGATAACGCTCCAAGATTCTCCTCTGATTTCTATATTGCACGAGTCCCAGAGAACTCACCTGGTGGCTCCAATGTTGTGTCTGTGACAGCTAAGGATCCAGACTCTGGTTTGTGGGGTGTTGTCAAATACTCCATCCATGGCTCAGGATCAGATCTCTTCTTCATCCAGTCAGATTCAGGGATCATCTACACCCAGCCCTGGGCCAGTCTGGACGCTGAGGTGAAGTCCAAGTACAATTTCTTCATTAAGGCTGAGGACACAGAGGGAAAATACAGCCTTGCTGAAGTTTTTGTCACAGTTCTGGACCTCAATGATCATCGACCAGAGTTCAATGAGAATATTTTAGAGAAAACAATGATCATTGGCGCACCAGTGAAAATAGAGGCAATAGATGATGATGCAGAGGAGCCAAACAATGTTATTGAGTATTCAATCATGAAAGCAGAACCGGACAATATATTTGACATCAATGCAGACACAGGAGAGATCAGATTGAAGCCCTACATCAAGTCAATGGACATAGTGCAAAACATCACAAATCAGAAAGACTGCACGTGGTCTGTGGTGGTCCAGGCCAGAGACAGAGGCTCCCCGTCTTTCAGTACAACCACACTTGTGAAAATTGATATCACAGAAGCGACTCGACTCAATGGCCCATTGCCATCCTTTTTAATGAAAAGTCGAGAAAATCCCATGCAAATCCTTGGCATGATCGCAGCTGTCATTATAGCTTTGGTTTTTGTGACTGTCTTGATCTCTACGGCTATTTTCATGCGTAATAAAAAGTCTAACAAGGTCTTGCCTTCTCGACGGATCATCAGAAGAAAACTTAGGCAACACAAGCAGTGGAACTTCCATAATCCCTTCAAACAACAGAACAATAGTGAAAGGTTCATGAAAGAATCTGAGGTCCCAGAGAATGTCAACTGTAACaataacaatgtgtgtgtgcatcactcCCTACCTCTGCCACCTCCACTGCCAGGCTATTCCAGACTCGGAGAGCGACCTTGGGCAGTATCATCCATTTCTGCAACAGTGGCAAAGAGGAATAAACAGAGCCACGTCAACACAGCACTGGTTTCTGAGCTCAAATTAAGACTTCAGCAGAAGAAATTGATGAACCAATACTAGTGCTTtgagtatatgtgtatatttgagATGTGCACATTtgtacacactctacactaatGTTCAGTGGGGATGTAAGAAGTGTGTAAATTTTGCCAATCATCTGGTCATATATCATATGATATGAGAAATACATGACTTACTTGTCCTAAGGACAAGATCTCAGCCTATATTTCTGTTTCACTGCCAATCATATGAGCCAATTAGTTTTTAACGCTATGTAAGTTGGTAGCAGGCTCCCACCAAACTAATCTGCCatttattgtaaaaaataaaataaaataaaataaaataccttaCTT

Function

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K16501 CDHR1, PCDH21; cadherin-related family member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55417 lncRNA downstream 303815 15106917 ~ 15153696 (-) True G46869
TU55265 lncRNA downstream 391512 15065034 ~ 15065999 (-) True G46754
TU55267 lncRNA downstream 392204 15064518 ~ 15065307 (-) False G46754
TU55268 lncRNA downstream 392204 15065034 ~ 15065307 (-) False G46754
TU55261 lncRNA downstream 396338 15060856 ~ 15061173 (-) True G46750
XR_003403869.2 lncRNA upstream 110224 15584165 ~ 15591191 (-) True LOC113538630
TU55698 lncRNA upstream 122788 15596729 ~ 15599206 (-) True G47114
XR_004577817.1 lncRNA upstream 145664 15619605 ~ 15673458 (-) True LOC117596835
TU55717 lncRNA upstream 223137 15697078 ~ 15697414 (-) True G47130
TU55750 lncRNA upstream 259892 15733833 ~ 15734079 (-) True G47158
XM_026934168.2 mRNA downstream 11996 15436535 ~ 15445515 (-) True rgra
XM_026942611.2 mRNA downstream 25748 15429014 ~ 15431763 (-) True slc18a3a
XM_026942598.2 mRNA downstream 29271 15418742 ~ 15428240 (-) False chata
XM_026942590.2 mRNA downstream 29271 15418742 ~ 15428240 (-) True chata
XM_026942915.2 mRNA downstream 41217 15412913 ~ 15416294 (-) True c3h10orf53
XM_026934643.2 mRNA upstream 206780 15680721 ~ 15696855 (-) True hif1an
XM_026942862.2 mRNA upstream 229218 15703159 ~ 15708376 (-) True wnt8b
XM_026943705.2 mRNA upstream 237189 15711130 ~ 15718040 (-) False scdb
XM_026943709.2 mRNA upstream 237189 15711130 ~ 15718039 (-) True scdb
XM_026943292.2 mRNA upstream 247340 15721281 ~ 15722878 (-) True trmt2b
TU55523 other downstream 41028 15413941 ~ 15416483 (-) False c3h10orf53
TU55100 other downstream 672777 14779865 ~ 14784734 (-) False sdhaf4
XR_004577668.1 other downstream 1265268 14181891 ~ 14192243 (-) True ccdc85a
XR_004577863.1 other downstream 2426315 13005486 ~ 13031196 (-) False slka
trnal-cag other downstream 2723229 12734200 ~ 12734282 (-) True trnal-cag
XR_004577773.1 other upstream 1505190 16979131 ~ 16982729 (-) False morn4
XR_004577771.1 other upstream 1505190 16979131 ~ 16982729 (-) False morn4
XR_004577772.1 other upstream 1505190 16979131 ~ 16982729 (-) False morn4
TU56907 other upstream 1997246 17471187 ~ 17476061 (-) True cisd1
XR_004577786.1 other upstream 2088391 17562332 ~ 17574422 (-) False LOC113538666

Expression Profile