RNA id: XM_026943279.2


Basic Information

Item Value
RNA id XM_026943279.2
length 5179
RNA type mRNA
GC content 0.46
exon number 20
gene id ercc6
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 16163098 ~ 16181155 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGACCTTACGTGGTTAATTGTGTAACTGGCGTATGTGCTGTTAGTAGTACACTTGAGAAAAAAGCGAATTTAAATGGCTGTAACTGTAAACTAATAAATTCTTGAATAGAAACGGATCGTTTGGAAGCCCCATTAATATGCCTATAGACAATAATGAGGACCCAGACTGTCCTGCATTGTCCAGTCCAGTGAGTGCTCTGACACCAGGAGGGAAAGAGGACAATGGGTCCAGCAGGACATCGAGTGGCCTGTCCATCCCGGAGAGCAGCCAGGAAGAGCCGGCTGCCGCAGCCTGCCCTGGAAATGCTGCGCCTGAAACCTCCAGGAAATCACAGCTCCTGCTCCATATCAACCGTCAGGAGATCCAGGCGGTGGCTCAGAACGATCAAGCAGCCGAGCTCCAGGGTTTGGGAGTGGACGTCTATGATCAGGATGTTCTGGAGCAAGGAGTCCTGCAGCAGGTGGACCGAGCCTTCCAGGAGGCCAATCAGGCCACGGCGAGGGCCAATGCAGAGAAAGAATACGAATCCGTTCTGGATGATCTCAGGTCATGCACAAGTGCTCTAAAACACATCAACAAGATATTAGAGCAGCTTACTCCTCATGCTGCCTCCAGCAAGGACATCAGCCGGAAAATCGACTCTGTCAAAAGGCAAAAGGAAAACAAGgaGAAACAGTTAAAAAAGATCCGAGCCAAGCAGAGGCGGTTACAGGCCGTTCTGAGTGGAGAGGATATTCAGAAGCTCGAGGCAGAATTACTGACTGAGGATgacacagaggcaGGCCCATCCACACAGGGCAGCATGCTCATGCCTGCTCAGGAAACAGAATGGGAAGAGCTCATCCGCACAGGTCAAATGACACCTTTTGGCACACGCATCCCTCAAAAGCAAGAGAAGAAGGAACCACGCAAGGTGATGCTGAGCGAAAACTCTGGCTTCGACAAGTACCTTGCTGACCAAGCTTTGATggcagagagaagaaagaaaccaACCCCAAAGAAGAAGGGGAAGGTTTCCAGAAGTTCCTCTGCAGATGCCCCAAATAAAAGGGCATGCTCCAAGCAAGAAAAGAAACTGCAGAAACGGATGCAGAAACTCCAAAGGACTGCCCTAAAGGCTCACCCCAAAGCAAGGcctaaaacagagaaagaatttCCCCAGACCACACGGAAGGGCTACAGGGAAGATGGCACAGACAGCGAGGGGTCCGAGTATGTGCCTAGTGATGAGCTTATGGATCCTGAGCAACCAGAGCGAGATGATGAGTTCTGGCAGGATGAAAAGGAAGAGTATGAACTTAAGCCTTATAAGAAAAAGGAGGCTAAAACCAAGAAGGCAAAAAAAGAGGATGAGAGCGATGAATACCTTCCCAGCAGTTCTGAGGATGAAGACGCTGAGAGAAAAGTCAAGGTGAAGAAATACAAAGACGATGGGGATATTGAATACTACAGGAAAAGAATTAGGAATTGGAAGAGGCAGAGACTCCAAGAGAAAGAGCAGAAGAGGCAAGCAGGAGAGGATGAGTCTGAAGAGAGTGACGCTGAGTTTGATGAAGGTTTTAAGGTGCCAGGATTTCTCTGGAAGAAACTCTTCAAGTATCAGCAGACAGGTGTCAGGTGGATGTGGGAACTGCACTGCCAGCAGGCAGGAGGCATTCTGGGAGATGAGATGGGCCTTGGCAAGACCATCCAAGTAATAGCTTTCCTGGCAGGCCTGAGCTACAGCAAGTTGAAGACACGAGGCTCCAATTACAGATATGCTGGTTTGGGGCCCACAGTCATCGTGTGCCCAGCCACAGTCATGCATCAGTGGGTGAAGGAGTTCCATACCTGGTGGCCTCCATTCCGCGTAGCAGTTCTCCATGAAACGGGTTCCTTTAATAATAAGAAGGAGAAGCTCATCCCTGAGATAGCCGCTAGCCACGGGATCCTCGTTACGTCTTACTCATATGTGCGCATTATGCAGGATTACATTCAGAAATATGACTGGCATTACATCATCCTGGATGAGGGCCACAAAATCAGGAACCCAAATGCAGGCATCACTGTTGCATGCAAGCAGTTCCGGACCCCTCATCGGTTCATCCTGTCTGGCTCACCCATGCAGAATAACCTGAAGGAACTTTGGTCCCTTTTTGACTTTGTGTTCCCAGGGAAACTGGGGACGCTTCCTGTCTTCATGGAGCAGTTCTCAGTGCCTATCACCATGGGAGGATATGCTAATGCCTCTCCAGTGCAGGTGCAGACAGCCTATAAATGTGCCTGTGTCTTGCGTGACACCATCAATCCGTACCTGCTGAGGAGGATGAAGGCGGACGTTAAGGCTAATCTCTCATTACCAGACAAAAATGAGCAGgTACTGTTCTGTAGATTAACTGAAGAACAGCGGCAAGTCTATCAGAACTTTTTGGATTCCAAGGAAGTGTATCAGATTCTGAATAGAGATATGCAGATTTTCTCTGGCTTGATTGCTTTAAGGAAGATTTGTAACCACCCAGACCTGTTCACTGGTGGGCCACGCATGCTGAGGGGCATACCTGCGGAGGAACTGACTGAGGACGAGCACTTTGGCTACTGGAAGCGCTCGGGCAAGCTAATAGTGGTGGAGTCTCTGCTCAGGTTGTGGTTCAAACAGGGACAAAGAGTCTTGCTCTTCACTCAGTCCAGACAGatgctggAGATCCTGGAGGTGTTTGTCAGGGAAAATGGATACACCTACCTCAAAATGGATGGCACCACCACCATTGCATCTCGGCAGCCACTCATAACGCAGTACAATGAGAGCAAGGATATATTTATCTTCCTTTTGACGACCAAAGTTGGAGGATTAGGTATCAACCTGACGGGTGCAAACAGAGTAATCATCTATGATCCGGACTGGAACCCTAGCACAGACACTCAGGCCCGTGAACGTGCTTGGAGAATAGGGCAGAAACAGCAGGTGACTGTTTACAGGCTGCTCACCGCTGGGACCATTGAAGAGAAGATTTACCACAGACAAATCTTCAAGCAGTTTCTCACAAATCGAGTGCTCAAAGATCCAAAGCAGCGCCGTTTTTTCAAGTCCAATGACATTTACGAGCTCTTCACACTTAGCAATCCCGATGGCTCCCAGGGAACTGAGACCAGTGCAATATTTGCAGGCACTGGCTCAGATGTACAGATTCCAAAGAGACACAAGGTGCCTCATCATTCACCATCAAATCTGTCATCAGAGCCAGAGAAAACCCAGTCATCTTCATTGTGTAAAGAAAATGCTTCACCTGAGCCTTTTAACAGAAACACTCCAACTCTCAATGGCTTATCCAACATTAATTCCAACAAGGAAAGTGACTCTTTAAATGTTACATCCACATCAAACTCTGCTGATGGTTCATTAACAAATGGTTATCAGCAGGATCTCTTTATTGCCAACACTCCTCAGAAACacagggaaaagaaaaagcactGTGACGTGACAGATGCGGCAAGCCGGAGCTCAGACAAAGATAAACACAAGCATAAAAAGCGTAAGCACAGTGAAGATGCCCGGTTTGAGGGTCATCGAATCTCTCACCTGGTGAAGAAGAGGAGATACAAAAGACAAGACAGCGAGGATCAGAAGGAGACAAAAGATGAGGAGAAGAACGACGACTATGTTCTCGCCAAACTCTTCAAGAAGTCTGGGATCCACAGTGTTATGAAACATGACACAATCATGGAGGCATCAAACCCAGACTATGTCCTGGTGGAAGCTGAGGCCAACCGGGTAGCTAAAGATGCCCTTAAAGCACTGAAAGTATCCAGACAGCACTGCAGGCTGCCGTTCAGAGGATCTGCACCAGCAACACCAGCCCCTTTCAGAAAAAGATTTGGACAGAAGAAGAACTCTCTTCTCAACCAGACCTcgaacacaacacaaaaaacaGGAGAGAAATGCaaggaTGCAGAGTTTATAAAGAAAGCAGGCATCAAGAAACTAGGATCTGCTGCCCACTTCAATGGAGAGGGAGTGGAGGAAGAAGCGCTTTCTTCCTCCCTCTCGTCCTCCTCACTGTTAGCCAGAATGAGGGCCAGGAATCACATTAGCTTACCTCAGAGccaagatgaagatgatgacgaTAATGAGCAAAGAGTGCAGTCTTCCACTCCACATGCTTCCCCTACTGAGCATGATGAGCTGCTGGTGGATTTGAGGAACTTTGTGGCCTTCCAGGCTCAGGTTGATGGCCAAGCCAGCACTCAGGAGATCCTGGAATATTTCACCCCGAGATTAACTTCCACACAGACTCCAGTGTTCAGAGAATTGCTTAGGAACATCTGTGACTTCCACAGGCTCCCTGGACAAGAGGGGATGTGGAAACTCAAAGCTGAATACAGATGAAGTGAAGGGAACATGTATAACATTTATAGATGTCATACATTTAGAATGCTTACCATATGTGGTATAACTGAACTCTGCCCTGGGATCAATGCAGTAATTTTTCATGGttaatgtatagtatatatgtTGATGTCATGTAGCAAGTTGTTTAATGATACGTGATTTGATATAATACcttgttattattacatttttatcactCATTTTGTACTTTATTGTTGCAGTGTACTCATTGATGATATACTTGAcaagattttgtttattttttccgtACTTTAATTTTTGTGTTAAACCTGAGGTTTACTTGACAATATGCTCTGTGTAACTGACAATGAACAAATGTCATTCAGGGAGACAAACATGGGCTACAACTGTGACTGTATAAAAcattgttgttggttttttctTCAACTGTAAGCTTGATTGAGTaatttcaatctttttttttttgtggtatggcaatgttttttgttttgtatagaTAGATTGTATAATGCCATCATTACTGTCTACATGCTTTATTCATTTGAATCTATTCCAGTGCTGTGTTCCAGTGCAATCTGATAGTGTGAAAtaattaatctatttatataGAACAATGTTTTGTTACTGTATTTGGATGATTATGACAGAAAGGCATCATGTAATACTGTATTAATACCAGCCAAATGGGTCCAGCCAAGTTGGTTTATGTTTTgcctttgaatttttttttttctagaattcAGTGTTGGTGAAAGGTCTTCCAAATACAGCTTCCTCATATTACGCACATACGAACATTGAATAAAAGCCTGACAGGTTTGATGTGgaa

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K10841 ERCC6, CSB, RAD26; DNA excision repair protein ERCC-6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55827 lncRNA upstream 29096 16124666 ~ 16134002 (+) True cxcl12a
TU55821 lncRNA upstream 59048 16103836 ~ 16104050 (+) True G47224
TU55664 lncRNA upstream 127759 16033304 ~ 16035339 (+) True G47084
TU55651 lncRNA upstream 267019 15893581 ~ 15896079 (+) True G47071
TU55615 lncRNA upstream 447574 15711137 ~ 15715524 (+) True G47043
TU55863 lncRNA downstream 11540 16192695 ~ 16203524 (+) True G47265
TU55862 lncRNA downstream 12261 16193416 ~ 16203524 (+) False G47265
TU55957 lncRNA downstream 125313 16306468 ~ 16308843 (+) False arhgap22
TU56057 lncRNA downstream 213850 16395005 ~ 16397038 (+) True G47406
XR_004577907.1 lncRNA downstream 260907 16442062 ~ 16451765 (+) True LOC117596920
XM_026934386.2 mRNA upstream 29379 16124627 ~ 16133719 (+) False cxcl12a
XM_026940430.2 mRNA upstream 87448 16072735 ~ 16075650 (+) False cxcl18a.1
XM_026940448.2 mRNA upstream 105840 16056384 ~ 16057258 (+) True si:ch73-6k14.2
XM_034302962.1 mRNA upstream 172044 15987439 ~ 15991054 (+) True ppifa
XM_034302963.1 mRNA upstream 172044 15987645 ~ 15991054 (+) False ppifa
XM_026943611.2 mRNA downstream 1854 16183009 ~ 16188933 (+) True drgx
XM_026932409.2 mRNA downstream 29405 16210560 ~ 16219838 (+) True vstm4a
XM_026935874.2 mRNA downstream 53359 16234514 ~ 16237542 (+) True lrrc18a
XM_026941903.2 mRNA downstream 90142 16271297 ~ 16279590 (+) True si:ch211-223a10.1
XM_034302718.1 mRNA downstream 103967 16285122 ~ 16308898 (+) False arhgap22
XR_003404341.2 other upstream 90031 16070714 ~ 16073067 (+) True cxcl18a.1
TU55689 other upstream 91178 16070759 ~ 16071920 (+) False cxcl18a.1
TU55629 other upstream 365894 15793428 ~ 15797204 (+) False eif4ebp2
XR_004577898.1 other upstream 1795652 14361367 ~ 14367446 (+) False cgas
XR_003404567.2 other upstream 1879930 14213402 ~ 14283168 (+) False slc24a3
TU55884 other downstream 53380 16234535 ~ 16236648 (+) False lrrc18a
XR_003403773.2 other downstream 3160195 19341350 ~ 19356098 (+) True sfxn5a
XR_004577568.1 other downstream 3160195 19341350 ~ 19356098 (+) False sfxn5a
XR_004577569.1 other downstream 3160195 19341350 ~ 19356098 (+) False sfxn5a
XR_003403774.2 other downstream 3160195 19341350 ~ 19356098 (+) False sfxn5a

Expression Profile