RNA id: XM_026943305.2


Basic Information

Item Value
RNA id XM_026943305.2
length 1270
RNA type mRNA
GC content 0.45
exon number 9
gene id dnajb12a
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 15722881 ~ 15730701 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTTTGGTCGCGTCATTATGCGGCGCCTAAAAGCCATTTCAGTTCCGCTGTCGCAATGGAATCAAACAAGGACGAAGCGGAACGCTGCATAGAGATATCTATCGCGGCGCTTCGAGATAATCAACCCGACAAAGCTCGAAGATTCCTGGAGAAGGCACAGAAACTGTTTCCCACACAGAAGGCACAACGTTTATTAGAATCTATAGCTCTGAATGGAAACACACATGGCAGTAATAATAActgtggagaaaaagagagcagtGGAGTTAGACACCGAGCCACCAGTGCTGGAGAGGAGACATCAGAAGACGGTGCCACAGACGGAGCCAAGTCATATACAGCAGAACAACTGGATGCAGTCAAACAAATAAAGAAGTGCAAAGACTACTATGAGATTCTGGGAGTCAGTAAAGATGTGTCGGATGATGATCTGAAAAAAGCTTATAGAAAACTGGCTTTGAAATTCCATCCGGATAAAAACCATGCTCCAGGTGCTACAGAGGCATTTAAAGCTATCGGGAATGCGTATGCCATACTTAGTAACACAGAAAAGCGGAAACAGTACGACCTTTATGGTGAGGAGAAAGTTCACCAGTCACGTCATGGCCATTCTCATCACGGCTTTGAGGCAGATATTTCGCCTGAGGATCTCTTCAACATGTTCTTTGGAGGCGGATTCCCATCAAGTAATGTCCATGTTTATAGTAATGGCAGGATGAGATTTGGACATAACCAGAGGCATGAACGAAGAGAACAACGGAGAGATGGAAGCCTTGCTCTGTTTGTTCAGCTGATGCCCATCCTCGTCCTCATTGTAGTTTCAGCCCTTAGCCAGTTGATGGTGTCCAGCCCTCCCTACAGTCTAAGCCACAGGCCATCCTCAGGGCACACGAACAGGCGACAGACAGCTAATCTGAAGGTGCCTTACTATGTGGGTGACCACTTTTCAGAAGAATATACTGGAAAGCATCTTAAGAATATTGAGCAAAGTGTGGAGGATGACTACATTTCAAACCTTCGAAATAACTGTTGGAAGGAAAAGCAACAGAAGGAAGGACTGTTGTATCGGGCACGGTATTTTGGAGATTCAGACTTATACCAAAGGGCCCAGAAGATGGGTACACCCAGTTGTTCAAAGCTGTCAGACATTCAAGTCCTTTTACATGGACACTGAAAAACAAgaaggtCCATATTTGAAGGTGACCAACTACAAACTCACCAAACTTTCAGTAAAAGTAGAGTGGGAATTTGCACCagttcaagaaaaaaa

Function

GO: NA

KEGG:

id description
K09518 DNAJB12; DnaJ homolog subfamily B member 12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55615 lncRNA upstream 7357 15711137 ~ 15715524 (+) True G47043
TU55393 lncRNA upstream 249011 15473201 ~ 15473870 (+) True G46849
TU55373 lncRNA upstream 303239 15419029 ~ 15419642 (+) True G46833
TU55286 lncRNA upstream 638571 15079813 ~ 15084310 (+) True G46765
TU55287 lncRNA upstream 638571 15081653 ~ 15084310 (+) False G46765
TU55651 lncRNA downstream 162880 15893581 ~ 15896079 (+) True G47071
TU55664 lncRNA downstream 302603 16033304 ~ 16035339 (+) True G47084
TU55821 lncRNA downstream 373135 16103836 ~ 16104050 (+) True G47224
TU55827 lncRNA downstream 393965 16124666 ~ 16134002 (+) True cxcl12a
TU55863 lncRNA downstream 461994 16192695 ~ 16203524 (+) True G47265
XM_026933724.2 mRNA upstream 45432 15673435 ~ 15677449 (+) True cuedc2
XM_026933752.2 mRNA upstream 97035 15596662 ~ 15625846 (+) False pax2a
XM_026943827.2 mRNA downstream 15752 15746453 ~ 15773703 (+) True spock2
XM_026943836.2 mRNA downstream 15752 15746453 ~ 15773703 (+) False spock2
XM_026940901.2 mRNA downstream 62705 15793406 ~ 15797191 (+) True eif4ebp2
XM_026943092.2 mRNA downstream 68527 15799228 ~ 15812480 (+) False pald1b
XM_026943082.2 mRNA downstream 68528 15799229 ~ 15812480 (+) False pald1b
XR_004577898.1 other upstream 1355435 14361367 ~ 14367446 (+) False cgas
XR_003404567.2 other upstream 1439713 14213402 ~ 14283168 (+) False slc24a3
TU54033 other upstream 2221835 13498092 ~ 13501046 (+) False pcbd1
TU53738 other upstream 2689633 13032279 ~ 13033248 (+) False si:ch211-223p8.8
XR_003404144.2 other upstream 2722919 12982406 ~ 12999962 (+) False col17a1b
TU55629 other downstream 62727 15793428 ~ 15797204 (+) False eif4ebp2
XR_003404341.2 other downstream 340013 16070714 ~ 16073067 (+) True cxcl18a.1
TU55689 other downstream 340058 16070759 ~ 16071920 (+) False cxcl18a.1
TU55884 other downstream 503834 16234535 ~ 16236648 (+) False lrrc18a
XR_003403773.2 other downstream 3610649 19341350 ~ 19356098 (+) True sfxn5a

Expression Profile