RNA id: XM_034303069.1


Basic Information

Item Value
RNA id XM_034303069.1
length 3426
RNA type mRNA
GC content 0.43
exon number 3
gene id cdc42ep3
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 10650453 ~ 10659241 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATCTAAATGCAAAAGGGTGAGGAGACAGCAACAGGATGAAACAAAGGAAGGGTAGAGACTCTATGAGGAACacagggagggaaggagagagtgaAACTGGGTGATTGACAACCAGCATCTCCTAACAGGACTTCGTCTCCTACAGCCAGCTCCACCATCTGTCCACACAGCTTCTCGTAACGTAACTGTCCATTCTCGGTGAAGCTGAGAAACCACAGAAATAGAGGCGAAGTgattgcagagagagagagagagagagagagagacagagagacagagacaggtgCTGCAGGAGGGGAGAgcaggaaggaggaggaggagatttCTCCCTGAGCAGAACGGAGAAGAGAGAAGCCGCACACAGTAACGCAGAGGAATTCCTAAACAGCTGTCCGGCAGACCTCCTGCCTGTGAGGAACGGACATCCAGGGCTAAGAGACGGAAAGACAGAGTGCAAGTCAGGGAGGAAGAGAAAACCGCTGTAGACTACACTACACAGAAGAAATTTGGGACAGAAAAATTTCACAAGACAAGCCACTACTTCTGCAGGAAGAACTGAGAAGTTCATCTTAAGACGATAAATACACAGCCCTCTCATTTCATCTTCTGCACATGGAGAGCCAAAGACAACACGGGGGCTGAGAACAGAAGGAGAGGTGGACAGCAggggagggaaaaaataaagaaagagggAATAACAGATGAGTCTGAAACAAGAAGAATACTTGCTCCACCCTGCCTGTCTCAAAAGACTCAGAACTCTCTAGCCCTCAGGCCTCGAAAGGAAGCGCCTAGCCTGAAgTAAAAGACATCTCATCTGGCCTATTAGGACCAAATCAGCCCAACAGTGAGGCCTGAGGACACTGTCACTGTATATCTACAATCCTCAAGTGTCTGAGAATGTAACTCCTCTCATTATCTGGGGAGAACTCGGATCAGCATCAGCATCTACATCACAGGATCATAGGGTTCAAAGACATctccctttcttctttctcttctctcacgGATTTTACTGTTCTGAGATGCCGGCCAAAACTCCCATCTACCTAAAATCCAACAACAGCAAGAAAGGGAAGAAGTGTCGCCTAAGAGACATTCTGTCCCCAGACATGATCAGTCCTCCACTAGGAGACTTCCGCCATACTGTCCACATTGGGAAAGGGGGTTTATGTGACACCTTTGGTGACATGACCTTCCTTCAGGGCAAGTTTGAGTTGCTTCCTGGTAAGAGTGGCCTGGGTCGACCACAATATGGTGTCCATGGCGAGTTCATGCGAGCTAACAGTGCATCTGATGCCTCCTACATTGAAACTCCTTCACCAATCCTGAAGAATGCTATCTCTCTCCCTACCATTGGGGGGAGCCAAGCACTGACCCTGCCTCATATCACTACCACAATGTTACCCACAACCAGGGACCCACTGGACGACCTGGTTGGGCCACCCACTCCACCTGCCAGCTCAGAGGGGACAGATGATCTGGAGATCCTGCAAATGGAGAACCTTCTTCAGTCGATAACTATCTTCAGACGTGATCCGAGTCCTGTTCTAGAGGAGGTTAGTGAGAATTCCTTATTTCCTATCAACTTTGTGGAGAAATCACTGGAAAGGAATACCTCCATTTACAACTCTGAGAATGAGGATACTAAGAAGCCATTAATGTCTATCTTCATCAATGGCAATCACAATGAAAATGGCAACAGCAATAGGAGTAGCAAATGCAAAGACAACAGCATCAGCAATAATGACTATAATGACATGAACAGTGACATCTTTCAGTATGAAAAAGAGTTGGCCAGCATGAACGGAGATTGGGAAAATAGAGATAGTGGTGTAGAGGAAGGACGCATTTGTGACTTTGACTTTGAGTTCTCTAAAAGCAAGAGTCCCTCTCAGGAGTCTGTCAACCACAACACAGGGTCACTGCTGTCTCTCGAACTGGACTTGGGCCCTTCTATCTTGGATGATATACTAAATATCATGGGTAAACCTGAGTCTTGAACTGTGCCTCTGGCAAAAGCAGGAAGACAGAAGAAAGACTTGCCTGTCAAATCAAACACATAAGATTTATGGGTATTCTACATTGGAAATGAACTAAAAAGGCAGAGCTGCCTCAGTGATATTTCTTCCAGTATATTTTTATCCTCAACTTCAACTGTCTGTGCTTAACCAGTGTTGTTTCTCTTGTAGGTCATAAGAGATGCATGCTTTATCAAGTGTAGGAAAGCTACACAGAGATATTGTGCCTTTTAATGTCACCATTGGGTTAAATcaagaaataaaactgtttgGTGTGCTCGTCAGTTCTGTCACAGGTGTAAATATAAGCAGTACATTTTACACTCTATGCTGTTGTTCACTAATGCACAATGTTACATGttatgtaatgatgtaatgataTTTCTCTAAGAGATGTACAGCTGTGTGAATTATCTCCAAACTTTGTCACAACCCCTCCACCTCCCACCCTGTacagatattatatttatactgacTCTCTCATTAACTGTGCTACAAAAGCATCAAAGCATATACCTATGTTTTTACTGTGTGGagatacaatataaaataaacgaGTAAATAAGTAACTTTTTGATATGTCCCATTTGGGAAatgctgtgtattattttaCCTTTCAGTCCAAgaaatctttaattaaaaatgaatgttacaGATGTGCTAGCAGAGAGAATATGGAGCCCACCCACCTTTTCCCTCGTCTCTGACATTCTTCTCATTCACCCAGAATGCCCTGCATGGGATCAGAGGTGGGTGAACAGTGCATCATTTCTACAGCCAGACGCCTGCACCGTTTGTCTACAAGTTGCTTGGTCAGAGGGAAGAGAGGGTCTTTAGCATTCCCACACATTCCACTGAAGCAGCACAAGTGCATAGGACAGGCCATAAATAAACATCCTGAACCATGACAAAGGGCCTTGATCTTTAGTTGAGGGTCGGATTGTAAAAGCTAACAGCCCAAAAGCAAACAGTTTTCCTTACAAAGAGTGAGATCTCTACTCACTACTGTAATTAAGAGCTGTCAATGAACTAATGCTGAAACATAAGTACTACAACCAGACAAGTGTAATTAACATGTCTGGAGTTGCTTgacattgttgtttttcctcttttttgtattaatttttgctaaacatatttaaatgaatttcagCTGCTTTCACCTATGTGAAATGTAGCTATAATTACAGTTATCATAATGGCAGTTACTTGGCCCTAAAATCTCATGAaaggtttatttgtttgttgcttgaggttatttttaatatccacTTTTCAATGCGACATAACTAAATAAGTAGACCTCAAATGCCACTGATTTCTATCTGTAATGCAATTAGCTAATTTTGGTGCAGTCCAAAGTCTCCTGTGAATgagaacagaaataaacatgCGATATTCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51991 lncRNA downstream 334005 10315725 ~ 10316448 (-) True G43987
TU51975 lncRNA downstream 345371 10291067 ~ 10305082 (-) True G43982
TU51974 lncRNA downstream 384865 10265356 ~ 10265588 (-) True G43981
TU51966 lncRNA downstream 396515 10253724 ~ 10253938 (-) True G43978
TU51888 lncRNA downstream 407571 10241941 ~ 10242882 (-) True G43910
TU52138 lncRNA upstream 14105 10673346 ~ 10723668 (-) True G44105
TU52216 lncRNA upstream 157431 10816672 ~ 10817292 (-) True G44173
TU52312 lncRNA upstream 263068 10922309 ~ 10925258 (-) True G44262
TU52323 lncRNA upstream 294264 10953505 ~ 10956492 (-) True G44271
TU52326 lncRNA upstream 315578 10974819 ~ 10978423 (-) True G44274
XM_026942485.2 mRNA downstream 34830 10607859 ~ 10615623 (-) True opn3
XM_026936634.2 mRNA downstream 57213 10587876 ~ 10593240 (-) True pbld
XM_034301541.1 mRNA downstream 81625 10567357 ~ 10568828 (-) True LOC113541130
XM_026932621.2 mRNA downstream 87865 10557601 ~ 10562588 (-) True mtg1
XM_034302507.1 mRNA downstream 133544 10513951 ~ 10516909 (-) True chchd1
XM_034301338.1 mRNA upstream 72290 10731531 ~ 10735897 (-) True LOC113545523
XM_026943420.2 mRNA upstream 126500 10785741 ~ 10797095 (-) True polr1b
XM_026945155.2 mRNA upstream 185790 10845031 ~ 10849713 (-) True prdx3
XM_034302753.1 mRNA upstream 196897 10856138 ~ 10862110 (-) True dennd10
XM_034302754.1 mRNA upstream 196897 10856138 ~ 10861414 (-) False dennd10
TU51003 other downstream 1421569 9224881 ~ 9228884 (-) True sf3b5
TU50809 other downstream 1796659 8801243 ~ 8853794 (-) True G42967
TU50810 other downstream 1796659 8849109 ~ 8853794 (-) False G42967
XR_003403913.2 other downstream 1866655 8755869 ~ 8783798 (-) False zdhhc5a
trnae-cuc_7 other downstream 2180024 8470358 ~ 8470429 (-) True trnae-cuc_7
trnag-gcc_1 other upstream 1049373 11708614 ~ 11708684 (-) True trnag-gcc_1
TU53378 other upstream 1485654 12144895 ~ 12152506 (-) False tmem254
TU53492 other upstream 1865395 12524636 ~ 12534075 (-) False LOC113537616
TU53486 other upstream 1872202 12531443 ~ 12534075 (-) False LOC113537616
TU53537 other upstream 1972572 12631813 ~ 12633015 (-) False LOC113539135

Expression Profile