RNA id: XM_026943420.2


Basic Information

Item Value
RNA id XM_026943420.2
length 3854
RNA type mRNA
GC content 0.50
exon number 16
gene id polr1b
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 10785741 ~ 10797095 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTCCCATTGCGCTCACTAACACATGTGAGTAGAGCATGCGAATATGGACTACTCTGGGAAATGGAGTGGTTTACCCACTGCTCCGAGCCTAAAACACCTCACAGAGGCAGGATATGGGTTTCCTAAAGAGAAACAGCATGAAGCCGTGCAGGATCTGGTGAAAGCGCACATCGAGTCGTTTGATCAAGCGGTTACTGATGGACTGTGCCGAGTGGTTCAGGCCATTCCTCCTCTGGAGTTCCTGCACAAGGAGGACAGAATCAGCCTATCGTTTGTGGAGGCTGCTATCCACAACCCCACCGTGGCCAAAGGAGGAATCTGCAAGGATCTCCGTGTCTATCCTGCCGAGTGTAGAGGAAGGAGGTGCACATATAGAGGAAAGCTAGTGGCGGATGTCAGTTGGTCAGTCAATGGGGTCCCTAAAGGAATTATTAAGCAGTCATTGGGACAGGTGCCCATCATGGTGAAGTCCAAACTGTGTAATCTCCATGGCCTCTCACCTAAAGAGCTAATCGAGCACCATGAAGAAGCAGAGGAAATGGGAGGCTACTTCATAGTGAACGGCATCGAGAAAGTGATCCGCATGCTTATCATGCCGAGGAGGAACTACCCCATCGCTTTGTCAAGACCAAAGTTTAAAAGTAGAGGTCAAGGCTACACTCAGTACGGAATTTCAGTGCATTGCGTGAGAGATGAACATACATCCATTAACATGAACCTTCACTACCTGGACAATGGAACGGTCATGCTCAACTTCATTTATCATAAAGAGCTGTTTTTCCTTCCTCTGGGCTTTGCTCTTAAGGCCCTAGTGGACTTCTCAGACTACCAGATCTACCAGGAACTGATAAAGGGCAGAGAGGAGAACTCCTTCTTTAAGAGCTGTGTGTCAGAGATGCTGCGCTTGGTGATGGAGGAGGGCTGCACTACCAGAGTGAAGGTGCTCGACTATCTGGGAGAACGCTTTCGGGTCAAGCTGAACTTGCCAGAGTGGTACACAAATGAGCAGTGTGCTAAATTTCTTCTGGACGAGTGTCTGTGCATTCACTTGAAGTCTGACACTGAGAAGTTCTACATGCTTTGCCTGATGACACGAAAGCTGTTTGCCTTTGCCAAACAGGAGTGTATGGAGGAGAATCCAGACAGTCTGATGTGTCAGGAGGTCCTCACGCCAGGACAGCTTTATCTCATGTTCCTGAAGGAGAAAATGACTGGCTGGCTGGTGTCTGTGAAACTGGCCTTGGATAAGAGGAGCCAGAGAGTCGGGGGACTGACCTCAGATAACCTGGCTAAAATTTTCAACATGGGCACTGACCTTACCAAAGCCTTTGAGTACCTGCTTGCTACAGGCAACCTCGTCTCCAAGACAGGTCTGGGTATGCTGCAGGCCAGTGGTCTGTGCGTGGTGGCTGACAAGCTCAACTTTATTCGCTATTTGTCCCACTTCCGGTGTGTGCACAGAGGAGCGGCCTTCGCCAAGATGAGGACCACAGCAGTGAGAAAGCTGTTACCCGAGTCCTGGGGCTTCCTGTGTCCTGTGCACACACCTGATGGAGCACCATGCGGTCTGATGAACCACCTCACGGCCCACTGTGAGATTGTGGCTCCTGTTCACCCCACTACTACGCTCCCTGCCCTGCTCTGCTCACTAGGTGTTACTCCAGTGGATGGAACTCCTGGTCAGCCATACTCCTGCTGCTACCCTGTTATACTGGATGGCACCATGATTGGCTGGGTTGAGAAAGATCTCGCACCCTCTCTGGTTGAATCTCTCCGCAGGTTCAAGGTGCTAAGGGAGAAAAAGATTCCTCCATGGACTGAAATTGTGCTAGTTCCTCAAACGGGTAAAGCAAGCTTGTACCCAAGCCTGTACCTGTTCACCACACCATGCCGCATGGTGCGACCAGTCCGCAACCTCACCCTGGGCAAAGAGGAGCTCATTGGCACCTTCGAACAGCTTTACCTTAACGTGGGGATATTTGAGGATGAGAGAGAGCATGGTGTCACCACCCATCAGGAGCTCTTCCCCCATAGCATGCTCAGTGTGGTGGCCAGCTTCATCCCCTTCTCAGACCATAACCAGAGTCCTAGGAACATGTACCAGTGCCAGATGGGTAAACAGACTATGGGTTTCCCACTGCACTCTTATCAGGATCGCTCAGATAATAAGCTTTACCGCTTACAGACACCCCAGAGTCCTCTGGTCCGTCCTCTCATGTACGACCACTACAACATAGACAACTACCCCATTGGCACAAACGCTATAGTGGCTGTGATCTCCTATACAGGCTATGACATGGAAGATGCCATGATCGTGAACAAGTCATCATGGGAGCGTGGTTTTGCCCATGGCTCTGTCTATAAGACTGAGATAGTGGACCTGTCGGAGAAGGCCAAAGGTGAGGACGGTGTGGTGTTTGGGATTAAACCAGGTGACCCTAAAGTGTCTGGCAGGCTGGATGCAGATGGATTGCCACCTATAGGAACCAAGCTGAATTATGGAGATCCTTTTTACAGCTACATCAACCTCAACACAGGCCAGAGCCATGTTACCTTCTACAAGAGTCAGGAGAGTTGTGTGGTGGACAACATTAAAGCGTGCAGCAATGACGCAGGAACAGGCCGCTTCAAGCGTGTGTGCATTACTATGCGAGTACCACGCAACCCCACCATCGGAGACAAGTTTGCCAGCAGGCATGGTCAGAAGGGTATCCTGAGTCGCCTGTGGCCGGCTGAGGACATGCCTTTCAGCGAGAGTGGCATGACCCCTGACATCCTGTTCAACCCACACGGCTTTCCGTCACGTATGACCATCGGTATGCTGATCGAGAGCATGGCGGGCAAATCGGCAGCGTTGCACGGCCTTTGCCATGATGCCACACCGTTCACCTTCTCTGAGCACAACTCAGCCCTTGAGCACTTTGGTACCATGCTGAAGGCGGCAGGTTACAATTATTACGGCACTGAGCGCCTTTACTCAGGACTGAGTGGACTGGAGCTGGAGGCTGACATCTTTGTAGGTGTGGTTTATTACCAGCGTCTGCGCCACATGGTCTCTGACAAGTTCCAGGTGAGGACGACGGGAGCGAGGGACAAAGTGACAAATCAGCCACTTGGAGGGAGGAACGTGCAAGGTGGCATCCGCTTCGGAGAGATGGAACGTGATGCCCTGCTGGCACATGGCTCGTCCTTCCTGCTGCATGATCGCCTGTTTAACTGCTCAGATCGATCCGtgactcaggtgtgtgtgcgctgtggcagtttgctgtctccactgcTGGAGAAGCCGCCTCCACACTGGTCAGCCACACGCCATCGGAACACTATCTGCTCACTGTGCAAGAAGAGTGACGCCATTGACACAGTGGCTGTCCCCTACGTGTTCCGCTACTTCGTGGCTGAACTGGCGGCaatgaacattaaaattaaactaGATGTGAAGTAGATTTactgtctgtatttatacaTGCAGCACCAATTATTATGCTCATGGATCATAATTTCCGAATATTGCTCGTCACACTTGTCATGTGAAGACAATATACTTGTCAACATTGGTAACTGATATAATGCTATTTTTATATTGAGACACTGTTGtatatgttatgttttttttcatgaattgtTTAAAACAGACATTCAGAACTTAAACACAGCAAAGTGCCTATAAgagggttttttctttttgtacaaAATAGATAGGAAATATGAAAAAGGCTCGTCTTACATCATGGCGTTAGTCACATCTATAAGTGGCCCCAGAGTCAAGTGGATGCTGGTTTTGTCAAATCACTTAAACGAAATACCTGCAGTAGATTGCTGGATGATATGGTAAAAATATCACTTTGTGATA

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005736 RNA polymerase I complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0001054 RNA polymerase I activity molecular_function
GO:0032549 ribonucleoside binding molecular_function

KEGG:

id description
K03002 RPA2, POLR1B; DNA-directed RNA polymerase I subunit RPA2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52138 lncRNA downstream 62073 10673346 ~ 10723668 (-) True G44105
TU52133 lncRNA downstream 129897 10653714 ~ 10655844 (-) True G44103
TU51991 lncRNA downstream 469293 10315725 ~ 10316448 (-) True G43987
TU51975 lncRNA downstream 480659 10291067 ~ 10305082 (-) True G43982
TU51974 lncRNA downstream 520153 10265356 ~ 10265588 (-) True G43981
TU52216 lncRNA upstream 19577 10816672 ~ 10817292 (-) True G44173
TU52312 lncRNA upstream 125214 10922309 ~ 10925258 (-) True G44262
TU52323 lncRNA upstream 156410 10953505 ~ 10956492 (-) True G44271
TU52326 lncRNA upstream 177724 10974819 ~ 10978423 (-) True G44274
TU52327 lncRNA upstream 181551 10978646 ~ 10980295 (-) True G44275
XM_034301338.1 mRNA downstream 49844 10731531 ~ 10735897 (-) True LOC113545523
XM_026943376.2 mRNA downstream 126500 10650453 ~ 10659241 (-) False cdc42ep3
XM_034303069.1 mRNA downstream 126500 10650453 ~ 10659241 (-) True cdc42ep3
XM_026942485.2 mRNA downstream 170118 10607859 ~ 10615623 (-) True opn3
XM_026936634.2 mRNA downstream 192501 10587876 ~ 10593240 (-) True pbld
XM_026945155.2 mRNA upstream 47936 10845031 ~ 10849713 (-) True prdx3
XM_034302753.1 mRNA upstream 59043 10856138 ~ 10862110 (-) True dennd10
XM_034302754.1 mRNA upstream 59043 10856138 ~ 10861414 (-) False dennd10
XM_026932931.2 mRNA upstream 97256 10894351 ~ 10927228 (-) True march5
XM_026939537.2 mRNA upstream 185499 10982594 ~ 11010366 (-) True btaf1
TU51003 other downstream 1556857 9224881 ~ 9228884 (-) True sf3b5
TU50809 other downstream 1931947 8801243 ~ 8853794 (-) True G42967
TU50810 other downstream 1931947 8849109 ~ 8853794 (-) False G42967
XR_003403913.2 other downstream 2001943 8755869 ~ 8783798 (-) False zdhhc5a
trnae-cuc_7 other downstream 2315312 8470358 ~ 8470429 (-) True trnae-cuc_7
trnag-gcc_1 other upstream 911519 11708614 ~ 11708684 (-) True trnag-gcc_1
TU53378 other upstream 1347800 12144895 ~ 12152506 (-) False tmem254
TU53492 other upstream 1727541 12524636 ~ 12534075 (-) False LOC113537616
TU53486 other upstream 1734348 12531443 ~ 12534075 (-) False LOC113537616
TU53537 other upstream 1834718 12631813 ~ 12633015 (-) False LOC113539135

Expression Profile