RNA id: XM_026943469.2


Basic Information

Item Value
RNA id XM_026943469.2
length 4014
RNA type mRNA
GC content 0.45
exon number 6
gene id mavs
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 19287108 ~ 19294701 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTGAGCTCCAATGAGAATGAGGCAGCGCTGTAGGCGGGGTTTTAACTTGCACTTGCGGAAGACAAGCTGCGGATTGAAAGTCAAGTCTGATTTGGACGGAAGTTCGTGCACGTCTCGATCTGAAGTGCTGTTTTTGATTTTTGGATCCAGGTTCGAGGAGAGTAAATTAAAAGGTTCACCTTACAAAATCTGACAAACTGAAGCAGTGTGAAGATGGCATATGCAGGTGACCGGCTGTATAATGAGGTTATCAGGAGAAAGATGGGTGATTTGGCCTCAAAAGTCAGAGCGAGAGAAATCATAGCTTACTTGCCCTGCCTCACACTTTCTGATCGGGAGGAGATAGAGGCTAAAAGAGAAACCGCCGGAAACTACTGTGCTATAATGGTGCTGCTTGACAACTTACGCAGACGAGAGAACTGGCCTGATCAGTTTATCTCAGCACTGCGGACATGCGAACAGTGGGCTCTGGCCGATGAGCTCAGTGAAGCTTATGACAGAATAAGGGGAATCCACACCCAGAGAACAGCCACCACTGCTGCTTCAGCTCCTGTTCTTCCTGCTGCATCTGTCAGCCCTGCAGCACCTCCTGCTCCTGCGCCTgcccctgctgctgctgcacccAGTCCAGCCCCATCTCCAGCAGAAGCTTCAGCAACAGTTACCACGGCGACAATCCACAATGTCCCACACTCCACACCACCCTTGCTGACTCCTTCACTGGAAGCCTCAGCTCAGTCAGCTACTCCTTCTCCTATAAATTCACCCCCAGGGCCCTATCCCAACATAGCTGCTCCAGCCTTGACTGAAGCCCCTGCTTTAGTTTCAGCCCCAGATGGTCCAGTACACCCTCCTCCTGAATCAGCCCACCATGCTGAACCCCCTCTGTCAGTCTTAGCTCCAGATGCAAGGCCCCCTTCTCCAGTCTCTGCTCCTACATTGACCCCTTCTATTGGGCAAAGTGAAGTCCCAGTCAACTCCAGAGAGACATCCAAACTGGATATCTCAGGTGCTTCTGCCCCTATAAATTCTCCCCCAGAGTCCTGTTGTAACATAGCTTCTCCAGCCTTGACTGAAGACCCAGCCCTAGAGGTTTCAGTACAGCCTCCTCGTGGACCAGCCCACCCCGATGAACCCCCACTGTTGGTATTAGCACCAAATGCAATGCCCCCTTCTCCAGTCTCTGCTCCTAAGGTGACCCCCTCTGTTGGGAAAAGTGAAGTCCCAGCTGGCTCTAGAGAAACACCCACACTGGGTATCTCAGGTGTCCTAACTAATACTGCCCCTTCTGGACCATCCTCAGTTGCTGCACCTGCCCTTCCAACTAACCTAACATCCACGTCCTCCCAGGTTAACAAACCCGCCACCACTTCTCAGTCTTCTGCTTCACCTGAGAAGAGCAAAGTTCCAGTCGTAGAGAGCTCCAGGTCTGTGAAACACCCTGTCCAGGACACAAACCCTCCAGGGATTGTCTTAGCCCCAGACTCGCAGAACAACCCAACAATCAATCAGGTTGTAGAGAGGGTACACCCTGCAGTGTCGCCAAACTGCCAGACTCAGGAAACATCCCAGGGAACAGCACAGGCCTCATCTTCAGCATCTACAGATGCCGTTGCTGGCTGCTTGTCCAACTTCACAGCAGAAAACGAGAATTTTAGCAAGCCAGGTGTCCTAAGAGGAGAGGAACCATACTCAGTCAGTTCTGATCAGCTGCAGATCAGCAATGTGACCACGGAACATTCACCAATCCAACCAGCTGTGTCCAACCCCCACAGGGCTGAAGAACCTGTTGACGGGTCTGTCTCAGTCACTACTGATGATCTGATGATCAGCTCTTCCACCACAACTGTTCCAACACAGCGTGTTTCTGATCCTATAGCCCCTGTTCCAACGCTTATTCCTAGGGCAGTGGAAAATTCCTTTCCAGAAGGTGATAGGAATTCCTATCCCCATCAGCCAGTGGAGGACCACTATGAGTCTTTCTGTCAAAGTTTGCAGACAGAGCCAGGGACAAGAGTGCATATTGTTGAAGTTTCTGAAGGGCCATCAATCCAAAATCTCAATGGTCAGCCTCCAAGCATGGTTGGAGCAACTGCAATAGGCTTAAGCCGCAATAGTGAAAGTGAGGGTCTTGTTCAGTCTGTTTCTGAACATCAACCTAGCTTGCACATCCAGGTCAGCTCACAGTGCATAAAGGGAAATAATGCCAGTGATCTGGCTAGTCCTACTGCAGGTTTAACAACCTATGCAGAGCCAGCCCCAGCTAATTTTCAAGAGTCAGAATTAAATGCTTCAGGCCAGATTAACCTCCCTCGATCAGAGCAGAGGGACGAGTCCCAGGGAGCGCTCCACCAATTTCTGTCTAAACCACACCTTATTGCAGCTGCAGCTGTTGGCATCTCTGCTGTTTTTGTGGCCTGGAGGCTCAAGTATTAATATCGGGGCAGCTATGCGCCACCACCGGTGCCTTAAAACAAATTGTCTTACCGTAAGACATGTACCACAGGGTTGCTCTGgccattttattgttttgttatttgttgttttatttattaccttTACACTATATCATGTCCCGTAACTGACCAAGTTACACTGACCAAGTAACCAACCCTGTGCTTGTGATGATCATGTGGAGATTTAAATCAGTGATTAAACCAGTAAACCTGGTATTTACCACTTTGATTTCAAACTTACTGACAGTTGGTTAACTCAGCTGCATGTGCATCATGTAATCAGTTAAATGTATTGCTTGTGTGATCTAtgcaataacacattttatttcattcaagcATTTTCAGTCAGCCAGTCTGTACATATTAAGCATACTGCCTCACAAAACGTTCATTTCCTATGGCTCCTTCTGCAATGTACTGCACTCTAATTTGAACTCTCTTACAGACATCATCTAGAATATGTGCATAGTAGAAAGCACTGAATGTGTTGTCATTGTATCTAGCGTTAAGGCACCAAGTGCCACAAACTCATTCCAAGTGGAATCTTATGCTGTCCTTACAGAAGACCCAGTGAAAACCTGTGAAGGTTATTTTGGGAAATGATCAGACTTTTCTCACCTCCAAACCGATCCTTATACCAAAAGCAGAAACTTTcttgtattataaatatatgttaACGTGGGGATTAACTCTTTGCACTAAAGCTTAAAGACTAAGTACAGTCTTAATGGAATGTGACTGTGAATGCAGGACTATGGTTATACAAgtgaataattaaattattccaCCACTGGTATATTAACTACTTCCCACATCATAATATGAGTTGCCCATATTTGTATAGCTATATCAGCTATGCTATatttgtaattcaaatcatCAAGTATGATTCCATATCCTGTTTCaccttaattttaatttaaatttatacaaaGTGCTATGATCAAAAAGGTCATTATAAATTTGCAGACTTGTTTggtattttcatgttttcaccAAAACATTGTGTAGaggtaaatattatatatttatggcATGTAGTCCAGTGCACATACATTTGCCAGCCATGTATAATTGGTGCCTATCTCTCTTTGTAATGTGATGCTTATAAGTACCATCTTAGTTGGCTAATTGTTTATAAGCCTTTCTTGCACTCTTTTAATGAAATTGAGATTTCATCAGTATACGCTGAGTTGTCACTTTATTTATGTACACCTTGACTGTTGTGGCTACTTTTAGGTCTAAGGTTTTAATAGATGGGTTAACTTCTATTAGAGGATAACTGCCTAGCAATGGATGGGCTACAGACAGTAATTGTATACATACAAAGTGCACCCATATGCTGCATGGGCATGAATAAACAGCCAGTAATTGTAGTTACAAAGCAGGTGTACCAATAAAGTAACGATTCCATAGGTGTagctataaaataataattcgGTTTATGCTCTGTATGTCTTATTTGCTCTAAAGTCAGATATAAATTAGcatgtttatgaaataattgTAAGCAAAGGAAAGGTGGGAATTAAATAAAAACGGTATCTGGGGAAAATA

Function

GO:

id name namespace
GO:0039528 cytoplasmic pattern recognition receptor signaling pathway in response to virus biological_process
GO:0005739 mitochondrion cellular_component

KEGG:

id description
K12648 MAVS, IPS1; mitochondrial antiviral-signaling protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58155 lncRNA downstream 35245 19251593 ~ 19251863 (-) True G49184
TU58066 lncRNA downstream 96493 19190327 ~ 19190615 (-) True G49108
TU58001 lncRNA downstream 234357 19052527 ~ 19052751 (-) True G49053
TU57913 lncRNA downstream 317312 18969591 ~ 18969796 (-) True G48975
TU57908 lncRNA downstream 329649 18957157 ~ 18957459 (-) True G48970
TU58193 lncRNA upstream 105963 19400664 ~ 19400863 (-) True G49215
TU58214 lncRNA upstream 133045 19427746 ~ 19428725 (-) True G49232
TU58488 lncRNA upstream 393891 19688592 ~ 19688877 (-) True G49481
TU58495 lncRNA upstream 419464 19714165 ~ 19715420 (-) True G49484
TU58497 lncRNA upstream 419717 19714418 ~ 19715420 (-) False G49484
XM_026945113.2 mRNA downstream 1067 19283096 ~ 19286041 (-) True pank2
XM_026935385.2 mRNA downstream 5279 19261810 ~ 19281829 (-) False loxl3b
XM_026935376.2 mRNA downstream 5283 19261810 ~ 19281825 (-) True loxl3b
XM_026935393.2 mRNA downstream 5286 19261810 ~ 19281822 (-) False loxl3b
XM_034302920.1 mRNA downstream 51443 19222426 ~ 19235665 (-) True alms1
XM_026937744.1 mRNA upstream 6504 19301205 ~ 19302542 (-) True LOC113540998
XM_026942251.2 mRNA upstream 62914 19357615 ~ 19362980 (-) True emx1
XM_026944643.2 mRNA upstream 79608 19374309 ~ 19375581 (-) False noto
XM_034303050.1 mRNA upstream 79608 19374309 ~ 19375581 (-) True noto
XM_034302619.1 mRNA upstream 320016 19614717 ~ 19667659 (-) True atrn
TU57664 other downstream 673707 18330368 ~ 18613401 (-) True lrmda
TU56951 other downstream 1625724 17657581 ~ 17661384 (-) False col13a1
XR_004577786.1 other downstream 1712686 17562332 ~ 17574422 (-) False LOC113538666
XR_004577787.1 other downstream 1712686 17562332 ~ 17574422 (-) False LOC113538666
TU56907 other downstream 1811047 17471187 ~ 17476061 (-) True cisd1
TU58169 other upstream 21786 19316487 ~ 19319733 (-) True G49195
XR_004577815.1 other upstream 341137 19635838 ~ 19667661 (-) False atrn
TU58944 other upstream 1063233 20357934 ~ 20369097 (-) False gng2
TU58943 other upstream 1063287 20357988 ~ 20369097 (-) False gng2
TU58946 other upstream 1063287 20357988 ~ 20369429 (-) False gng2

Expression Profile