RNA id: XM_026943626.2


Basic Information

Item Value
RNA id XM_026943626.2
length 3361
RNA type mRNA
GC content 0.42
exon number 3
gene id tlx1
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 14785440 ~ 14791568 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCGGCTCCCTCCATCCGGCAGCCTTGCTCTAAGCCAAAAAGGAGGTAGGGGGAAAACGACAAACGACTGAAGTTGAGTGTTTCTCACACATGCTCACGCAGTCGTGGTTCTGAGATAGCGAGGGTCCGAGCACTAAGCCGCGCTCCTGTAGCTGCGTGATCAGGCGCGGCGCGCGGAGGAGCTCTGGGAGCGCGCGCCTCTTCGGGACTATGGATCATAACATAGGAGCACATCTCCACCACACACACGTAGACTCCATCAGCTTCGGCATCGATCAGATTCTCAACAATGCAGAGCAAGGGAGCTGTATGATCTCTAACCCCAGGATGCAGGACTTGGACTACGGGCTGGGGAGCATTGTGAGCAATGCCTACAACACCATGACGGGCAACTACAACGGCAATAACACCGGCGCATACACCAGCAATGCGTGCAGCGCTGCACCACTCACTGGCTCCTACAACATGAACGTTGGCATGAACGGGAGCGGAAACGGCGTGAACGCGTCCGGGGTGATCCGTGTACCCGCACACCGGCCACTCAACAGCGTGCACTCCTCCATTCCCACAAGCGGCGCCACGGTGCACAACATGGCAGGCATGGGCACTCTGAACAACCTGACAGGACTAACATTTCCGTGGATGGAGAGTAACAGGAGATACACCAAAGACAGGTTTACAGGTCACCCGTACCAGAACCGCACACCaccgaagaagaagaagccgaGGACGTCGTTCACGCGCCTGCAGATCTGCGAGCTGGAGAAGCGCTTTCACCGCCAGAAGTACCTGGCTTCAGCGGAGAGAGCCGCTCTGGCAAAAGCACTTAAAATGACTGATGCACAAGTCAAAACATGGTTCCAGAACAGAAGGACAAAATGGAGGAGGCAGACGGCGGAGGAGAGAGAGGCCGAGCGGCAGCAGGCGAATCGCTTATTAATGCAGCTGCAGCAGGAAGCTTTTCAAAAGACTCTGAACCAGCCTGTAACTCCAGACCCGATCTGCCTGCACAACAGCTCCCTGTTCGCCCTGCACAACCTGCAGCCATGGACTGATAACACCAACAAGATCAGCAGCGTCTCCACCTGCGACTAGCAGCACCACCTCTTCCTTTCTGCAGCTCTAGCTCTGTATCACTGAGTAATCCCGGCGTCACTTTTCCTCCACCTACCACTGCTCCTGTGTTACTGTCAGCCTGCAGGAGAGCAGGCTTCATTCCCCACGGCTTGCTCTTGTCTCCAGTCTGAACGAAAACTCTAACGAATTATTCCAGATATCAGGTGTTTGAACACATGTGTAGTAGGCTATATTTTTATACAGCATTTTTTGCACTTTTACTCTTCACTGCATTTTAGATTAAATGGCGCGTGAATGCCACAAAGTCCTGGGTTTTAGTTGcaacaccattttttttaaagctaagcAGAAAATGGACTTGAAGAATCAGGTTTCAAGCACTTATTCCGGAGGTATGATACTCAAAACACCTCCTTTCAGACAAATCCGGTAATTCTGTATAGTTTTGATAGCACATGGTCTGTGTTATGGTTTTAATTTTTGGTAAACAGACAAAGTAAAGACAACAGCAATCACGTAGGctactttacatttatttagcacGCTAAGCTTAATTCCATATTTTCTTCAACATAGCTTTCATCTGAGATAAATCAGAGATAGTTATCTGATACAGAGAGTCTTTTCTTCATTGCTGTTCTGGTTAATGAGACAGCTGGATACCTTATTTTGCAGTAAAACAGCTGTATGTATTATTTTGTCAAGTTCATATTTCATTCAACATTTTTGTTCagataatattttaaacactgaactcaacttttattcctcttctttttcacttaaagcaacatttttatACTGACATCCTGTAGCAAGACAAATTTTAGATAGATATTGGATTTCATTTCAGAGTGAATGACTGTTTCGGTTGCATGATAAATGTATGTCCTCCTCGTTGTATGGGGAATgtaacagtgtgtttgtgttattaacTATATGCagatgtgagagtgtgtttgaaACTTTCCATGGCCATGCTAGAAGAGTATCGTGTTAAGGTCCATCTGCACATTCCAAATGCTACAGTGCATTAAATGTAtcctttaaaaatgacaaaatattaagaCATGGGAAACAAGAGGAAACCCAACATCAACCCAAGCAAAACTAAAATCCGAAGTCATGGCGAGATGTCcataaataagcaaacaaagACTGGTTTAACCCTTTTTATAGACTTTTGATTTTGTGAAGAATTCAAGATTCCATCATAACTGGTTTTATGtctgctttaataaatatttaacatttaatctcCTCATTTTTCCATAAGCGTAAGCTGTAACACAGTTGTACAGGAAACATGCATTGCAAATAGCTGCATTCCAACTTTTCCTGGAACTATTAGATGATGTACATAGGTAGTAACTATTACAGCGTGCACCAAATTTCcagacaaaagtccttcatcagctgtgccaCTGAAGCTGCAGGAGTTAAACGCAGCTGATATGTTGATTTGTTTTCACTGGAAATTTTGTGTACTATGCTACAATTTTTATTACctctacaattttttttactaaggTACCCTGCAGTACAGTATATGGTGGTCAGAGATCAAGACTTATGTGAATAAAATACTTGAACATTGAACATAATGAGTGGTAGGCTATATATTCAGTTTATACAAAAGATCATATTAATGATACCGTTTCACCCAAACAAATTAAGCATATTGGTGCCTAGTcatctttcatttctgtttttaaagaaCACTGTCATTTTTCATGCTGTCATTTTTGTCTATTAACATATGTTAATAGAATTTCCTATTTCCTATATTGTAAAGAGGCTGTAGAATATTATTGCTCAGTATTACGATCATGGAACTGTAATTATGAGAAAAACAAGCTGGGACCCATAAAAACCATGTGATAATTATCTCTAGGTCTCTATCTAggtctctatctctatctctggGTTATTTGGATATTCgatttataaaatactacttgGAATCCTTTCTGATAGTGAAACACTCAGTCGTAGGGGTCTACAGAAAATCTTCCAGAGTTCTCCTGAGGGTCAAAATGGATAACCCTTAAGATTTAAATTCATTCTGAGAGTGTATTCACAAGGGCATATTAgtcttttgcatttatttttcatgcagGTCAAAAATCCAAAGCACATAACTAATCTGGTgtattgttttctgtttaatCATACTGCCAGGAGGTTAATTGTTGCcagttatttcatttcatttcatagaAGTGTGAAAATGATGTGTTAAAATATTCACAATGAATAAACATACATATTGTTTGTTTGATAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55026 lncRNA downstream 159470 14617653 ~ 14625970 (-) True G46576
TU55042 lncRNA downstream 170676 14614516 ~ 14614764 (-) True G46591
TU55041 lncRNA downstream 171622 14613541 ~ 14613818 (-) True G46590
TU54707 lncRNA downstream 493807 14289556 ~ 14291633 (-) True G46304
TU54560 lncRNA downstream 601354 14183768 ~ 14184086 (-) True G46183
TU55183 lncRNA upstream 145528 14937096 ~ 14937309 (-) True G46680
TU55218 lncRNA upstream 220679 15012247 ~ 15012450 (-) True G46711
TU55261 lncRNA upstream 269288 15060856 ~ 15061173 (-) True G46750
TU55267 lncRNA upstream 272950 15064518 ~ 15065307 (-) False G46754
TU55265 lncRNA upstream 273466 15065034 ~ 15065999 (-) True G46754
XM_026934198.2 mRNA downstream 687 14779856 ~ 14784753 (-) True sdhaf4
XM_026936856.2 mRNA downstream 6952 14673081 ~ 14778488 (-) False smap1
XM_026936847.2 mRNA downstream 6952 14673081 ~ 14778488 (-) False smap1
XM_026936837.2 mRNA downstream 6952 14673081 ~ 14778488 (-) False smap1
XM_026936828.2 mRNA downstream 6952 14673081 ~ 14778488 (-) True smap1
XM_026943169.2 mRNA upstream 21137 14812705 ~ 14815300 (-) True lbx1a
XM_034302813.1 mRNA upstream 171381 14962949 ~ 14966801 (-) False LOC113542020
XM_026939270.2 mRNA upstream 171381 14962949 ~ 14966801 (-) True LOC113542020
XM_026944180.2 mRNA upstream 205949 14997517 ~ 15009590 (-) False nt5c2a
XM_026944160.2 mRNA upstream 205949 14997517 ~ 15009590 (-) True nt5c2a
TU55100 other downstream 706 14779865 ~ 14784734 (-) False sdhaf4
XR_004577668.1 other downstream 593197 14181891 ~ 14192243 (-) True ccdc85a
XR_004577863.1 other downstream 1754244 13005486 ~ 13031196 (-) False slka
trnal-cag other downstream 2051158 12734200 ~ 12734282 (-) True trnal-cag
trnae-cuc_9 other downstream 2116549 12668820 ~ 12668891 (-) True trnae-cuc_9
TU55523 other upstream 622373 15413941 ~ 15416483 (-) False c3h10orf53
XR_004577773.1 other upstream 2187563 16979131 ~ 16982729 (-) False morn4
XR_004577771.1 other upstream 2187563 16979131 ~ 16982729 (-) False morn4
XR_004577772.1 other upstream 2187563 16979131 ~ 16982729 (-) False morn4
TU56907 other upstream 2679619 17471187 ~ 17476061 (-) True cisd1

Expression Profile