RNA id: XM_026943765.2


Basic Information

Item Value
RNA id XM_026943765.2
length 1464
RNA type mRNA
GC content 0.51
exon number 3
gene id gpr78a
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 7749636 ~ 7755159 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTGCTGAATGCGCACTGCTGGAGGGAGAGCACGCGTCCACCGGACACCCATGAGCGCGTGAAGGTCCGCCGTTAAGCAGGAGCTTGAGTCATGGGTTCATGGGACGCGCTGCTGCTTGAGTACCTGCTCTCCTCGGTAGCCCTCGTGTCTCTCTCATCCAACTCGCTCGTGCTGCTGTGTTTCTCCCGAAGCTCAGAGATCCGCGCCCGTGCGCCCGGGCTTTTCATCCTCAACCTGTCACTGTGCAACATCCTGTCCACCGTGCTCAGTGTGCCCACAACGCTGCTCGCGCTCTCCAAGAAGCAGAAACCGTTCGGGGACTCACTTTGCCGAGTAGCGAGCTTCGCGGATACGTTTTTGACTACAAACGCTATGCTGAGCATGGCTGCCCTGGGTGTGGACCGGTGGGCGGCTGTGGCGTTTCCGTTTACCTACTCAAGCAGGGTGAGACACAAGCACGCGGCCCTGACGGTGGCTTACGCGTGGGTGCACTCTCTGGCGTTGTCCGCGGTGCCCGCGCTCTTCTCGTGGACCGACTACAGCCCGGTGTACGCCTCGTGCACAGTGCACCTGCAGCGGATGGAACCCGGGTTCGCCGTCTTTACCGTGGTGTTTCACTGCGCGAGCTTCGCGCTCGCGCTGCTCGTCCTCTGCGTCACGAACCTGAAAGTTCTTCAAGTGGCGCGTTTCCACTGCAAGAGGATTGACGTCATTACCGTCCAGACTCTTTTGGTGCTGGTGGACATTCATCCGAGTGTAAAACAAAGATGCTTACTGGAGCAGAAAAGAAGGAGACGGAGGGCTACCAAGAAAGTCTGCATATTTATTGGCTCTTTTGTGTTCTGCTTCACTCCATATGTCATAACAAGACTGGCAGAACTGATTCCTTCAGTGCAGATCAACCCGCACTGGGGGGTCATCAGTAAATGCCTGGTGTACAGCAAGGCTGCAATGGACCCTTTTGTCTATTCCTTGCTACGACAAGAATACAGAAAGGCACTCATTGGAATGACTAATACACTTACGGGATGCaacttttcctcctcctctgacCACAGCAGTAGCTCATATACAGAAAACGACAGCAATGTTCAGAGGGTGAGCTGAATGCTGAACACTTTGGAGCGAAAGAAGGAAATTGGACCGACACACCCTTTAACCTGCATGTAAATGtcaaatgtaaacataaacaatACCCTGTTTTTTCAGCGTAATCTCCATCTACTGCATCAATAGCATAAGTGGTTATTTATGCTTGTCTAAAGGTTTTGTGGTATTCATTAGTGATCAGGATGAAAGTAAAGCACTGTGTTTATGTACTGGTAATTCAAAGGAAAATTCAGAAGGAAACTGAACGGAAAGAATGTATAAATTCTTTCCCTTGAAAAAGGAGTCCCATCTCTGAAAGAAGAAATGATACACATTTAGAAAAACTttcaaaacagcagctctgacagttctgT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50032 lncRNA upstream 15981 7733442 ~ 7733655 (+) True G42307
TU50029 lncRNA upstream 27785 7721649 ~ 7721851 (+) True G42304
TU50015 lncRNA upstream 104714 7640935 ~ 7644922 (+) True G42295
TU50006 lncRNA upstream 119531 7624869 ~ 7630105 (+) False scoca
XR_004577840.1 lncRNA upstream 274596 7473370 ~ 7475040 (+) True LOC117596850
TU50188 lncRNA downstream 111516 7866675 ~ 7866918 (+) True G42442
TU50193 lncRNA downstream 154265 7909424 ~ 7909698 (+) True G42447
TU50268 lncRNA downstream 420326 8175485 ~ 8176073 (+) True G42522
TU50277 lncRNA downstream 434871 8190030 ~ 8190247 (+) True G42531
TU50244 lncRNA downstream 441713 8196872 ~ 8197242 (+) True G42498
XM_034301226.1 mRNA upstream 13727 7716040 ~ 7735909 (+) True LOC117596357
XM_034302952.1 mRNA upstream 37090 7704449 ~ 7712546 (+) False LOC113543264
XM_034302950.1 mRNA upstream 41951 7704449 ~ 7707685 (+) True LOC113543264
XM_034302951.1 mRNA upstream 41951 7704449 ~ 7707685 (+) False LOC113543264
XM_026941359.2 mRNA upstream 55109 7680769 ~ 7694527 (+) True htra3a
XM_026941926.2 mRNA downstream 2451 7757610 ~ 7771338 (+) False cpz
XM_026941917.2 mRNA downstream 2452 7757611 ~ 7771338 (+) True cpz
XM_026945018.2 mRNA downstream 314662 8069821 ~ 8080290 (+) True lrpap1
XM_026932353.2 mRNA downstream 686626 8441785 ~ 8445916 (+) True paip2b
XM_026934625.2 mRNA downstream 693498 8448657 ~ 8452951 (+) True dok1a
XR_003404394.2 other upstream 83603 7649198 ~ 7666033 (+) False naa15b
TU49753 other upstream 528613 7203950 ~ 7221023 (+) True G42075
XR_003404319.2 other upstream 2392939 5263582 ~ 5356697 (+) False znf827
TU48562 other upstream 2407886 5318534 ~ 5341750 (+) True G41047
TU47789 other upstream 3915025 3831949 ~ 3834611 (+) False LOC113545357
TU50445 other downstream 710588 8465747 ~ 8466312 (+) True G42685
trnak-cuu other downstream 714465 8469624 ~ 8469696 (+) False trnak-cuu
TU52056 other downstream 2797100 10552259 ~ 10558295 (+) True sprn
XR_004577889.1 other downstream 2839415 10594574 ~ 10608704 (+) False LOC113543929
XR_004577793.1 other downstream 3344434 11099593 ~ 11171114 (+) False dntt

Expression Profile