RNA id: XM_026943827.2


Basic Information

Item Value
RNA id XM_026943827.2
length 3437
RNA type mRNA
GC content 0.43
exon number 11
gene id spock2
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 15746453 ~ 15773703 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtaaccAGCATCCTGTAATCGGGTCACATTTCAGTGAAGGTTCAGCATCCATCCCTTGCTGTTAGGAGAAACAGATCCTCTGACTCGGTGTTCTCTTGCTGAACCCTGGTTAACAGGAATCATGGTGCTCTTGTGTCTTGTGTCTCTTCTCCTCCCGATGCTGATGCTCTCGGGGTCTCCGGTTCAGGCGGATGGAAAGCGAGGTGGCAAAGATGCGGCTGAGAAAAGCGCTAATTTCATGGAAGACGAGCAGTGGCTGGCCACCATTTCCCAGTACAGTCGCAAGATCAAGAACTGGAACCGATTCCGAGATGAAGTAGAGGATGATTACATCAGATCATGGGATGAAAATCAAGGCTCAAATGAAAATGTAGACACCACTAAAGACCCCTGCCAGAAGGTGAAGTGTAGCCCACACAAGGTGTGTGTTGCCCAGGGCTACCAGCGTGCTGTGTGTGTCAACCGCAAGAAGCTGGAGTACAGGCTGAAGCATCCAGTGGTGGGTCAGCAGGAGAACAACTGCAAACCGTGCCCTGTGTCCACCTCTGGGCCTGTGTGTGGTTCTGATGGACATAACTATGCTTCTCAGTGTAAGCTGCAGCATCAGGCCTGTCTCACAGGGAAAGAGCTGAGTGTGAAGTGCACTGGTCCCTGCCCATGTTCCACTTCAGCTGTGCCGAGTACAATGACAGACAGTACACACGACAGTTGTACAGGCCAGGACCTAGCAGATTTGGGTGATCGTCTGCGGGACTGGTTCCAGCTGCTTCAAGGCAATGCCAAGCAGAACAACACACGCAAGCCTACTGCAGCCACCTCAGCATCAATTTTGGACCGCACTCTAGTGGCAACCTGTAAGGACTCCATTGGATGGATGTTTTCAAAGTTGGACACTAATAATGACCTGTATCTGGACCAGGCTGAGCTGGCTGCTATTAATCTGGACAAGTATGAAGTATGTATCCGGCCCTTCTTCAATTCCTGTGATTCCTACCGTGATGGCAAAGTCTCCACAGCTGAGTGGTGCCTCTGCTTCTGGAGAGAGAAGCCTCCCTGCCTGGCTGAGTTAGAGAGGATCCAAATGCAGGAAGGAGCCAAAAAGAAGCCAGGTACATATATCCCCAGCTGTGATGAGGATGGTTATTATAGGAAGCTGCAATGTGACCAAAGCAAGGGGGAGTGCTGGTGTGTAGACCAGCATGGAGAAGAGTTAATGGGCTCCAGAATCCATGGCAACACTGACTGTGATGAAGTGGCTGGCTACTCAGGGGATTTTGGCAGTGGCGTGGGAtgggaggacgaggaggagaaagaagcaGAGGACACCGGAGAAGAAgctgaagaagaggaggaggagattgGGGAAATGGATGATGGTGGCTATATCTGGTAGACCAAAATGAAATGGTTGCCTGGTCAAGATAGCTTTACTTTGACCACTGATTCAGAGGCAGCTCCATCTCTTGCTGACACAAAATAGTGGAAACTGGAGGGTTGGACATCTCTATACTGAACTCCAAACAGCAGTGGccgggggtgggggtgggggttgcACTGGGGGTTTGAGTTGTGGTAACTGTAGTGAAATTATGGGTATGggaaagagtttaaaaaatgatcttatatatacttgtgaaaaattttcttttgttgtatGTTCAAGATTGTGCTCTTCTGATAAATTCAATAGCATCAGCAATCTTAAGCTGGAATCTAGGTAATTGATAACTGGACATTTTCTCTTTAGATGAACTGGAGCTTTGCAAATGCTACACAGCGTGCTTCATCTCATCATGTGACGCGTTCTTCTTATGCAAGAAGCATAAACTAAATGCACATATATATTTGGAAACGTTACCTTTTAGTCTCAGACTTTTAGGGTAGCATTTAGATTTGAACTAAGACAGGCAGAACTCAagtgaaaatgtacaaatgacTGAATTTCTTGACCTTTGGCGGGTACATCATTTACAGGTTTAATTTTAACCCATATAGTTTCACAGGCTAGAACTCAGCAAGAATAAATTCAAAAGCCAAAACTGCTCTGATAACTAGCCACAGCTCAGTTATGGATACATTATCTGGCTATCAAGTGTTTCTGTGTCATTTCAAGATACAGTATGTCCTGTCCTTGTCTGTAAATTTGTGCAACATCATAATGCATTTCTTGTTGGTCAAAATATCAAATGTAAGGCCAAGCTTTGCATATTCCTTAACATACTCTGCAGATCGCTCCTTCTACACAGTTACTCAAAAGAAGGCATTTTATTCCCTATATATCCCCTGAAAGTGGATATAGTGAAGCACTGTGTTTCCTTGTATACCATGTGTTGACACTGAACATCTTGTGACACCCAGCAACAGTTTTGTAAAAACATGGTTTCCACTTTCAGATTTTTATCATAGAATCTGCTCAAAAAGTAGGTTAGGGAAAAATGCTTTATCTCTGAGGTAACAGTATGTCACAGTAAATATATGTATGAATGCCAGTATGGAGAATAAGATACGCAACCTGATGACAGCCAGGGGGACCTGTCTGTATTTCTATTTGTCTGTCGACTAATCAGATCCTCTCATCGACCATGGTGAAACAGGAGTCTATTGTAATGTTACTAGGTGTACATATAGTTTTGGTTTACACTGAGGAAAACTACATTCATGTACCAAACGCATTAAGCCATTCTTGGTATAAACGTTTCTGTCACCAGGTAAGACTTGACTTACAAGGTTGTGTATGGTATCAGGTCATCTAACAGCGAGACATCAGACGCCAGTGATTTCATACACATAAAAACAGGTCTTTTGGCGTAAACACTGTGCAATTTGTATCATACACTGAAACATTCATAACATACTCACTCCCTCTTGAGAGCACAAGACTGTTTGAAAATGCTTTTCTATGCTCAGCACAAGACGCACAGGCATTGTGCATAATCCATGCAGAtcttaaatgtgtgtgaatcaCAGATATTATCTGGTATGGTAATACATTCAGACATATCCAGGCTGTGAGCTCTAAGCAGGATTGGGAGTGTGATGTAATAGGATGTAATATGCTCGTCTTCTCTTTAAATCAACAACAGATAACAACTAGTTTTGTGTAAGAATGAATAATTGGATTTTTTCAGTTGGATTAACGTTTAATCCGTGTCATTAGAGTGCCCGTCACTCCAGTCTGATTGTGAGGAgataactgtttttgttttcctcatGTGTATGAGGGCATCACCTCTGAGTATGGATTAACTTGCATATGATCGTATTATCATATAAATTTATCATTGTAAATAGTTGGAGTATACAGACACAGTGTATTTGCCCTGGCAGTTGcattatatttgcatttagtTGCATGTTTCTTTGTCCAAATGTATCATCTTTTTGGCTCAGTATAATTACGATTAAAGGCATTGGGCCCAAATATTGTGTTCTCTTG

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K08136 SPOCK; testican

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55615 lncRNA upstream 30929 15711137 ~ 15715524 (+) True G47043
TU55393 lncRNA upstream 272583 15473201 ~ 15473870 (+) True G46849
TU55373 lncRNA upstream 326811 15419029 ~ 15419642 (+) True G46833
TU55286 lncRNA upstream 662143 15079813 ~ 15084310 (+) True G46765
TU55651 lncRNA downstream 119878 15893581 ~ 15896079 (+) True G47071
TU55664 lncRNA downstream 259601 16033304 ~ 16035339 (+) True G47084
TU55821 lncRNA downstream 330133 16103836 ~ 16104050 (+) True G47224
TU55827 lncRNA downstream 350963 16124666 ~ 16134002 (+) True cxcl12a
TU55863 lncRNA downstream 418992 16192695 ~ 16203524 (+) True G47265
XM_026943305.2 mRNA upstream 15752 15722881 ~ 15730701 (+) True dnajb12a
XM_026933724.2 mRNA upstream 69004 15673435 ~ 15677449 (+) True cuedc2
XM_026933806.2 mRNA upstream 120607 15596662 ~ 15625846 (+) False pax2a
XM_026940901.2 mRNA downstream 19703 15793406 ~ 15797191 (+) True eif4ebp2
XM_026943092.2 mRNA downstream 25525 15799228 ~ 15812480 (+) False pald1b
XM_026943082.2 mRNA downstream 25526 15799229 ~ 15812480 (+) False pald1b
XM_026943075.2 mRNA downstream 26899 15800602 ~ 15812480 (+) False pald1b
XM_026943066.2 mRNA downstream 26900 15800603 ~ 15812772 (+) True pald1b
XR_004577898.1 other upstream 1379007 14361367 ~ 14367446 (+) False cgas
XR_003404567.2 other upstream 1463285 14213402 ~ 14283168 (+) False slc24a3
TU54033 other upstream 2245407 13498092 ~ 13501046 (+) False pcbd1
TU53738 other upstream 2713205 13032279 ~ 13033248 (+) False si:ch211-223p8.8
XR_003404144.2 other upstream 2746491 12982406 ~ 12999962 (+) False col17a1b
TU55629 other downstream 19725 15793428 ~ 15797204 (+) False eif4ebp2
XR_003404341.2 other downstream 297011 16070714 ~ 16073067 (+) True cxcl18a.1
TU55689 other downstream 297056 16070759 ~ 16071920 (+) False cxcl18a.1
TU55884 other downstream 460832 16234535 ~ 16236648 (+) False lrrc18a
XR_003403773.2 other downstream 3567647 19341350 ~ 19356098 (+) True sfxn5a

Expression Profile