RNA id: XM_026943999.2


Basic Information

Item Value
RNA id XM_026943999.2
length 1596
RNA type mRNA
GC content 0.41
exon number 5
gene id cfd
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 19810135 ~ 19813866 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGCTTATATAAAGCTAAGAGGCTAGACTATAAACATATTCCATCTCAAGAAGGCAGTGGACAGAAAGGAGTCGTTCAGGATGGGTTCTCTACAAATGATCTTTGCTTCAGCTCTCTTCTATGCATTACTACTAACTGGCGAATGCATCACAGGAGGTAATGAAGCTGCACCACACTCCCGTCCCTACATGGCTTCACTGCAGCTGGAAGGCAAACACAATTGTGGTGGGTTTCTGATCTCCAGTCAGTGGGTTATGAGTGCTGCACACTGTTTCCAGGATGGCAATAATTATAAGGTGGTGTTGGGTGCTCATTCCCTATCTCAGGCAGAGGACACAAAACAAACTTTTGATATGGCTGCTGTCTATAACCATCCTGATTTCAAGATTGAGAACTACGATAATGATATTGCCTTGGTCAAGCTAAGTCAGCCAGTCACAGAGTCTGATGCAGTGAAGCCTCTGAAGTTCCAGAGAGCAGGAGGGAGTGATCCTGGTACAGATGCTGCTGTGGAAACTGCAGGGTGGGGCTCACTAAACAACCTGGGCAGCCGGCCAGACAAACTGCACGAGGTGACTGTTGCTGTTATAAGGAGACAGTTCTGTGGTCGCAGTAACTCCTATGGGGAATCCTTTACGACAAATATGCTCTGTGCTGGCAAACCACGCAAGGACACCTGCGATGGTGATTCTGGTGGTCCTCTGATCTATAAGGGCATTGCTGTGGGAATAACCTCAAATGGAGGGAGGAAATGTGGTTCCACCAGGAAGCCTGGACTCTACACCATTATATCGCATTATGACGATTGGATCACCCGCACTATGACCCAGTAACAAGTCTGCAGTCTGACTCACAAAATGAGCAAATCATATTATTGCTTGTAGGCCCCATCTTACTCTAACTTCGAGGCATATTAACTTTCATCTCACCTATCCAACTTATCTACAGGCTTTATTGTAGTGTGTGGTCTTTTGCTTGTTGTGATGAACACTCTGAAGTCACACTGGTCACAGAGGTATGCACCACTCTAGTCTTTCAGGGTGTGACAGGCATATTTGCTCTAGCTCACCAGTATACAGTGCACAGTATTCACATTGTTCTTTTTGAAAGTTAAACAGTTAATTTTGACATGACTAATATTATGTATAAGTATAATGGGTTTATTCAGATTTTATACCAGAATTGGAAATTTATTGGTTATGCTGCAATACAACAGTAGATTCCAGATTACATTCTTCTTGTAGCATCAACTCTAAACATTTTGCTAGCTCTCTTTTGGCATAAACTTTATGTTACAAATGTGAAATGACCCCTTCATGGGCATTTACCCCATACACCAACATACATAGTTGTCTACATCTTTGTAGACATTCGTTTTCTAAagtgtttattatgttttaataacGTGTCTTGTCTTGTATTCTGATTTATATATGAGTTATACAATTATGCTTGggtatttttataataattttttgaaAGGCCATAACACTCCtatcaaaataaatgtttactatgaattagcattttttaaatcaggacATACCTTTTATGTTGCATTTGTAAGATATCAGGTCTGCCAAATAACTAAAGAAA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K01334 CFD; complement factor D

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58494 lncRNA downstream 58781 19747694 ~ 19751354 (-) False slc4a11
TU58495 lncRNA downstream 94715 19714165 ~ 19715420 (-) True G49484
TU58497 lncRNA downstream 94715 19714418 ~ 19715420 (-) False G49484
TU58488 lncRNA downstream 121258 19688592 ~ 19688877 (-) True G49481
TU58214 lncRNA downstream 381410 19427746 ~ 19428725 (-) True G49232
TU58636 lncRNA upstream 81832 19895698 ~ 19970294 (-) False G49584
TU58643 lncRNA upstream 144578 19958444 ~ 19964311 (-) True G49584
TU58693 lncRNA upstream 206821 20020687 ~ 20025664 (-) True G49606
TU58688 lncRNA upstream 250390 20064256 ~ 20064511 (-) True G49605
TU58757 lncRNA upstream 367212 20181078 ~ 20184289 (-) True G49661
XM_026939218.2 mRNA downstream 2512 19787744 ~ 19807623 (-) True c3h20orf194
XM_026943527.2 mRNA downstream 42001 19716600 ~ 19768134 (-) False slc4a11
XM_026943495.2 mRNA downstream 42001 19716600 ~ 19768134 (-) False slc4a11
XM_026943511.2 mRNA downstream 42002 19716600 ~ 19768133 (-) False slc4a11
XM_026943503.2 mRNA downstream 46662 19716600 ~ 19763473 (-) False slc4a11
XM_026933670.2 mRNA upstream 27861 19841727 ~ 19844357 (-) True foxi2
XM_026936642.2 mRNA upstream 183003 19996869 ~ 20032845 (-) False letm1
XM_026936636.2 mRNA upstream 183003 19996869 ~ 20032845 (-) True letm1
XM_026937620.2 mRNA upstream 252836 20066702 ~ 20110665 (-) True kiaa1109
XM_026942983.2 mRNA upstream 297844 20111710 ~ 20120717 (-) True c9orf72
XR_004577815.1 other downstream 142474 19635838 ~ 19667661 (-) False atrn
TU58169 other downstream 490402 19316487 ~ 19319733 (-) True G49195
TU57664 other downstream 1196734 18330368 ~ 18613401 (-) True lrmda
TU56951 other downstream 2148751 17657581 ~ 17661384 (-) False col13a1
XR_004577787.1 other downstream 2235713 17562332 ~ 17574422 (-) False LOC113538666
TU58944 other upstream 544068 20357934 ~ 20369097 (-) False gng2
TU58943 other upstream 544122 20357988 ~ 20369097 (-) False gng2
TU58946 other upstream 544122 20357988 ~ 20369429 (-) False gng2
TU59887 other upstream 1797908 21611774 ~ 21614267 (-) False plekhh2
trnai-uau other upstream 2082318 21896184 ~ 21896277 (-) True trnai-uau

Expression Profile