RNA id: XM_026944022.2


Basic Information

Item Value
RNA id XM_026944022.2
length 4021
RNA type mRNA
GC content 0.45
exon number 17
gene id slc24a3
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 14213369 ~ 14286542 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACTTCCTCCACATCtctacagctctctctctctctctctctctctctctctctcattctgtcacCCCCTACCACACATACTCCTCCTATCACTCCTCCCTCACTCGTttgctttccttctctctccatccGCCTCAGTTTCTCCGCGTCTTGTGAAAAGTGGCTGTAAATCTGTCGCATCCATGGCGCGCCCCTTCCGCTCGCAGCATCTCGATTTCGTCCCGTTAGACTTGGACATAATATAGGAGACAGCGTCTCTGGCTAAAACTTATCAATATCGAGCTGCGCCTTCTTCGATATCCCCATCTCTACCGCTCCCAAACTTTTGCTTGTTCTTCCGTCGAACACCGCGTTGCTCTGAACCCACCAGCTTCCTGATGGACGGGGATGTGTGCGTCCGGCTCCGGAGCGGATCTACACGGCCGCAGCGGAGGAAAAGCAGCGCGCggaggagaagaagagcagAGCTGCTCGGAGTGAAGATGTGTGTGATGGGGCTGCTGCTCGCCGTGCTGTCGGGACTGGCCAACTGGACTGGCAATTCGAGTTACGTCATGTCTAGCGTGTCCTCTGAGGTCAGTGAGACATGGGAGAGTCGCAGGCTTCTGCAGCACTTCACCAATGAGACTGAGGAGCTGAAGTCTGTGAGGAACTGCACTCCacctggTATACATGAGTTCCCTGCGGACTTTTTCACCAACCAAGAGCGAATGGAGGGAGCTGTGGCCCTGCACATCATGGGTGCCATGTACATGTTCTATGCCCTGGCCCTGGTGTGTGATGACTACTTTGTGCCATCGCTGGAGAAGATTTGTGAGCGCCTCCATCTCAGTGAGGATGTGGCTGGAGCAACATTCATGGCAGCTGGCAGCTCAGCACCTGAACTCTTCACCTCTGTCATAGGAGTGTTTATCACCAAGGGAGATGTAGGAGTAGGAACAATCGTAGGTTCTGCAGTCTTCAACATCCTGTGCATCATTGGAGTGTGTGGGATCTTCGCTGGGCAGGCCGTGCGTCTCTCCTGCTGGACACTAATGAGGGACTCCATGTACTACACTGTCTCAGTGGCCACGCTGATCGTGtttATCTATGATGAGAAGGTTACATGGTGGGAATCTCTTGTCCTGATTTTGATGTACGtggtttacattttaataatgaaATGTAACTCCTATGTGGTGCACTACTTTGAACGGAGGAAGAAGAAAGCTACAAACCTGGGAAATGGTACAGCGAGCAGCACAGACCTTGATGATGGATGTGATGCTACAGCTGTGCTACTCAAAAAAGCGAATTTCCACAGGAAGCCATCAGTACTGATGGTGGATGAGTTGCTGTCTGCGTACCCACACCAGCTCTCCTTTTCTGAAGCTGGCATGAGGATCATGATCACTAGCCACTTTTCTCCACGCACCCGACTTACCATGGCCTCCCGCATGCTCATCATGGAGAGGCAGCGTCTCATCAATGGTCATTTCAGTAACGGGGATTCTGAGGTGACTGTCAGATTTCCTGTAAGGCGTGGAATGgagaacggcattgtgggtgtAGAGCGAGGCCTGAACACGTGGAGGAATGGACATTGTGATGATGACACACGAGGGGCAGATCCTGGCACTGATACAGAGAACGAGAACGAGGATAATGAGAACAATGAGaatgatgaagaagaggaggaggaagatgagaaTGAAGGACCCTTTGTTCCTTTCCACTGCCCAGggggCATGTGCAATAAGGTGAAGTGGCTGTTGGCATGGCCACTGAGTCTGCTGCTTTTCTTCACGGTGCCCAACTGTGCCTCGCCTCGCTGGGAGCGCTGGTTCATGGTCACCTTCATCTCCTCCACACTCTGGATCGCTGGCTTCTCATACATCATGGTGTGGATGGTGACAGTCATCGGCTTCACTCTGGGCATCCCAGATGTCATCATGGGAATTACATTTTTGGCTGCAGGCACCAGTGTCCCTGACTGTATGGCAAGCCTTATAGTGGCACGGCAAGGCCTAGGTGACATGGCCGTGTCTAACTCCATTGGCAGTAATGTTTTCGATATACTGGTTGGTCTGGGGCTGCCCTGGGCTCTCCAGACTCTCGCTATTGAATACGGCTCAACAATTCATCTCAACAGCAAAGgtctcattttctctgttgGACTGCTCTTAGCATCTGTGTTTATCACGGTTCTGGGTGTGCATCTGAATAAGTGGACCCTGGACAAACGTCTGGGCTTTGCGTGCCTCCTGATGTATGCTGTTTTCCTGTGTTTCTCCATCCTTATTGAATTCAATGTCTTCATCTTTGTCAATCTGCCCACTTGCCAGTGACACCACTCTTCTTGATCACTACCCTCTCTTGGTTGGTTCCATGAGGACTTGTCATTCCTTGTCTGAGGAAGATCTGACCTGTCCTTTATGAAAAGTTTCTTCTTGATCCAGTAAATCCTCCCTTTTTTCCACTTGTGATGGAGCATTTGGTCAGTGGCTTTGGCCAgtggaaagagaaaaggagaggagcAGATATGCGTGGTGGATCTGTTCAAAGATGCAAACTTCTTAGACAGGACCGGGAGATGTACAAAGATGACTACTGCCTGGTTTGATGTGAAAACAAAAAGGTTTGAaaattttatatgaatattaataactgaattgttattgaaatattaagaattttatgtctgtgtgttttgattACATTTGATTTATTAGCTGCTAAACTGGCTAAGAAAAGGTCGGACTGAAGACCATGGCCATGATGTACTGAGTACTTATGGATACACAAAGTTTATGATTTTGAAAGATTTCTTAAGAGATTACTTTAGGAGTAGCTAAAAGGTACTGGTGACCTGTTATATATTCTTATGGACAATACTGATGTGGTTGATCATGTGACTGGAGATTATCATGGGCATTAAACCCAGATTACGTAGTTCAAACCTCCCTTACCAGCTCTGTCTGGATGCCAGGGATTATCAaaattgtggatttttttaatatgttaaataagagTATGTTTACTTATTGACTAGATGACAAGAGTAGGAAAGGTTGAAAGATTGCTGTACATGAACAGATAATGATATTTACAGTTAACTAGCTCTGGACATATTTCCCCTTGACGGTCATGGGGAACATGTAAGTATCATTGGTACACATGGTAGAATGAAATATTTCAATCAGGGTTCTAGTCGTCTTGCCAGAAGTAAACTATTTAaggtaaaattgaaaatgaaaatatgttgATGCTGATATAAGAGATGTGTAAAAAGATGTTTACtaattatttgttttgtcaGTTACTCTGTATATATGGAAGCAGAGATTTGtctatttaataatttattgaaaactatttatgcatttattaatttcttattgtAGTCCTAaaagaatccacagctgtcccAAAGAAAAGACCAGTTTCAGCCACGCTTTGTCACTTTAACTCTGAAAGCTTTGTGtctcacatattttttttatgaaacgGATTCAGCATAATAGAGTGGCATGATCACTGCGAGGGGTTGACAGACAGTCTGTGTGTTTCACTCAGTGTTTCTAGTCAGTCAAAAGATGAAGGCCATGCAAACCCAAGTAGCTGATTAGCAGGAACGCATCCTGGTAAAATGAAGCTATTGTCTTAGCTAGTAGGATTTCAgcaaaaacatgattttatgcagatATAACACTCTGGTCTTGTAGATATTTCAAAGTAGATTGGGTTCAGAGAATGAATCCAAATAtcatctataaataaatgaaagtttgtgtgtttggacTGTTTCACGCAACCTATTTGGATTGTCTAGTTTGGAGATATCACGTGAATGATAAATATCATTACCATGGATCTGCCTGAGAACTGTGAACAGTGGTACAGCATCTGTAAACCTATGAGCTGTATCTCATCAGAGGGCTTCAAAGACTTTAGATAGCCGTCCAAATCCAGCTACACTAACACAACCCAAGTCACTCTGTCAAAAGGCACAttatctgaatatatatatatatatatatat

Function

GO: NA

KEGG:

id description
K13751 SLC24A3, NCKX3; solute carrier family 24 (sodium/potassium/calcium exchanger), member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54553 lncRNA upstream 29756 14183437 ~ 14183646 (+) True G46176
TU54552 lncRNA upstream 30209 14182991 ~ 14183193 (+) True G46175
TU54243 lncRNA upstream 316867 13894142 ~ 13896535 (+) True G45875
XR_004577873.1 lncRNA upstream 323553 13889279 ~ 13889849 (+) True LOC117596881
XR_003404657.2 lncRNA upstream 568064 13644120 ~ 13645338 (+) True LOC113545747
TU54602 lncRNA downstream 108 14286650 ~ 14288287 (+) True G46217
TU54606 lncRNA downstream 108 14286650 ~ 14288218 (+) False G46217
TU54604 lncRNA downstream 876 14287418 ~ 14288218 (+) False G46217
TU54753 lncRNA downstream 101487 14388029 ~ 14388311 (+) True G46337
XR_004577856.1 lncRNA downstream 331066 14617608 ~ 14626226 (+) False LOC113541837
XM_026943791.2 mRNA upstream 16328 14193834 ~ 14197074 (+) True soul2
XM_026939331.2 mRNA upstream 156939 14035638 ~ 14056463 (+) True fancl
XM_026941819.2 mRNA upstream 579924 13588316 ~ 13633478 (+) True bcl11aa
XM_026935703.2 mRNA upstream 712352 13498048 ~ 13501050 (+) True pcbd1
XM_026939104.2 mRNA upstream 783142 13419948 ~ 13430260 (+) True sec23ip
XM_026941983.2 mRNA downstream 2840 14289382 ~ 14292863 (+) True si:dkey-187a12.4
XM_026937917.2 mRNA downstream 9792 14296334 ~ 14328299 (+) True rin2
XM_026944267.2 mRNA downstream 44950 14331492 ~ 14341288 (+) True slc17a5
XM_026941730.2 mRNA downstream 60055 14346597 ~ 14351235 (+) True eef1a1a
XM_034303103.1 mRNA downstream 60135 14346677 ~ 14351235 (+) False eef1a1a
TU54033 other upstream 712356 13498092 ~ 13501046 (+) False pcbd1
TU53738 other upstream 1180154 13032279 ~ 13033248 (+) False si:ch211-223p8.8
XR_003404144.2 other upstream 1213440 12982406 ~ 12999962 (+) False col17a1b
XR_004577802.1 other upstream 1276600 12929559 ~ 12936802 (+) False spef1
XR_004577898.1 other downstream 74825 14361367 ~ 14367446 (+) False cgas
TU55629 other downstream 1506886 15793428 ~ 15797204 (+) False eif4ebp2
XR_003404341.2 other downstream 1784172 16070714 ~ 16073067 (+) True cxcl18a.1
TU55689 other downstream 1784217 16070759 ~ 16071920 (+) False cxcl18a.1
TU55884 other downstream 1947993 16234535 ~ 16236648 (+) False lrrc18a

Expression Profile