RNA id: XM_026944048.2


Basic Information

Item Value
RNA id XM_026944048.2
length 2641
RNA type mRNA
GC content 0.50
exon number 5
gene id bag5
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 18001657 ~ 18010593 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtgtgtgtgagtgtgtgtccccAGCGGTCACAGGTGGTAATGGGCTGTAGTTAGGCTGTGCTGCTGTCCACTACACAACACAGGTGCTGATGGCTGTGCGCTGGTTATGCAGcctgtTTGGGAAGCCCTTTGATGGTGGGAAGAGGACAATGGATCATGGCAaccaacagcaacagcaaccaCAGACCCAGTACATGGCAGGGCCATTCCAGGCATACATGGGCCCTCAGGGTCCATACCCTGGGCCCCACCCCACCCTGGTGCGCCTGGATGAGCTGCAAAGGGAAGCGGTGACATTAGGACAGCAAGTGTGTTCCTTCAGTGGCCTGCAGAGTGACAGAGAGTACAAACGACTCGAGAGGGAGCTGGCACGACTCCAGCTGGAGGTGGATCAGGTGGAGACAGAGGGACGGATGGAGCTGCAGCAGGCTCGGAAGCGGGCAGCAGGGGAGGTGGAGGGGTTGTTGCGCTACCTGGAGGGTAATGCTACTCACCCATCTCGAATAGCTATAGAAGAGCTGAGCCAGGAGGCACAGAGGCTCCTGCTGGCAGGGGTGGTGGCTCCATTTCGGCAAGGACAGGCTCAGGATGCAGCGGAGACTGGTGAGGACCTTGTGGAAGCTGTGCAGGATGTGGCAATGCGCCTGGCCCAGATCAAGACAGGCGGAAGTGTGCCGCTCAGGAAGGCCCGTTACCGCGCTCTTACCCGCGTCTGCGCTGtacaggatgtgctggaggGCCGCGTTCGCACGCACACACTTGCGTTGCCTCTGTCTGATGAGACCCATGAGGCCGTGCAGCGCATCAATCATGTGATGGTGCAGGTGAGTGGTGCCCGCTGCCAGCTGGTTGCTCTGCTGATGGGGTTGAGTGGGCGGGACAGCTGTGCCCACCTAGCACGTGTCCTCACTGAGCTGTTAGTGGAGCTGGATGCACTGGACGTGTCCAGTAACTCAGCCGTCAGGAACTACAGGAAGCAGGTGGTGGAAGAGATCAACGGCCTCCTTAAACACCTCGATCTGGAGGGGGAGGGAGATGACACTCGCAGGTATGACCTGACGCAAAATGACTCCATCCGTGAAATTGAGGCCATCCGAGGCCGTGTGTCTGTGCTGCGGGGAGAGGTACTGAGACAGGGTATGGCAGgccagggggcggagcttcagagTCTTCTAACTCATCTGGACCAAGTGGACACCGGACGGAACCCCTGCATTAGAGAGGCACGGAGAAGGGCTGTGCTGGAGATCCAGGCAGTGATCACCTATCTTGACCTCCGGGAAGCCCTCGGCCGCCGGAACCCTGGACCAGATGAACCTCCACCTCACGCAGCCGTGTGGCATGTCCTTGCCAGCCTCTCTGACCTGCATTTCCAAGTGCTCGGCTTTGATGGCAAGAGAGCTGACAAGAGTTACATGGTGCTTGAGGAGTTGCTGACCAAGCAGCTTCTGGCTCTGGATGCTGTGGACCCTCAGGGGGACCAGGGAACAAAAACAGCCCGTAAACAAGCGGTAAAATATGCCCAGAACATCCTCAGCTACCTGGACATGAAGACTGATGAGTGGGAATATTGAGAGTGGGAAgagaataaaagcagaatacTGGAAAGATTCACTTGCACAAAGTGCTTTGAAATTGTTTTGTGCCTAGTTAATGGCATGGTGGAGGAGCACTTGCACAAGTCGAATTTGTATATAAAAGACTTTGTCCTAGATGGTAAACTTCTTTCCCTACATGCACTGCAACTGCTGCTTTTCAGTTTGTCTATTCTGTTTATTATCCTAGTCATTGGCCAGTGGGACAGTTGTTACTAAAAACAGCAGTTTTATTCACTAGGTTGTCCGCAAGCAAACCTATGCAGCATTTGAGTGTTCCTGTTTTGATTCTGGCTCCATGGTGTGCTTTTTTCAGATGCATCCTTTTTCATGGTTTACTTTGGGCTCGGTGTGGTATGGAGCTAAACCCTGTTTTGCTCCCAAAAACTTGCTTCCCAGTCGACCACTTGTCTATAAGGAGCATGTCAGGAGGAGGTTCATCTGCGGTCTTTACTTAGTGTAGTTGCAACACAAGACTGTATTCCTGCCTACACAATAACTTTTTTCATTAGTATAGGAATGATTAACCATATGGCAGACacaaacatttaacaaaaaaaaattaatgatggCCAATGTTTGAACTCTGTAGATTGGCTGGACTGAATAAGCAGCATAGAAAGATCTGTTCACAAGATTTAGTCCCAGGATTTAGAATTTTCAcccaaatataaaaaaaattcattttcttGGGTTACAAATGatttaattagttttattaaGCCCTTGCTGACAAAATGCATACAATACCTAAAAATATCAGCTTTTGGGTATTGTTATGTTTCAAGAGTGGTATAGTAGTAAGAAACAGTGCCTGAAGATGATCAAAAAGAGATTATCTTGAGAAAATCAATCAAGTTACAAATTGTGTACCATCTAATGAAGTTGCAACATGATTGaacagaaaagaggaaaagtcTGTTTAGCTGCAGACAATGAATGGATGGCTAAAGTGAAGACATTTCTACTGTTAGGAGTAAACTATGTCTCTGTGCCTCctggggcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57216 lncRNA downstream 14026 17987422 ~ 17987631 (-) True G48368
TU57104 lncRNA downstream 183053 17817285 ~ 17818604 (-) True G48271
XR_004577884.1 lncRNA downstream 199771 17799740 ~ 17801886 (-) True LOC117596895
TU57083 lncRNA downstream 235992 17762794 ~ 17765665 (-) True G48254
TU57076 lncRNA downstream 274449 17716235 ~ 17727208 (-) True G48250
TU57280 lncRNA upstream 27094 18037687 ~ 18046886 (-) True G48411
TU57290 lncRNA upstream 73064 18083657 ~ 18084805 (-) True G48419
XR_004577851.1 lncRNA upstream 76911 18087504 ~ 18091613 (-) True LOC117596862
TU57364 lncRNA upstream 156427 18167020 ~ 18173182 (-) False G48476
TU57365 lncRNA upstream 159432 18170025 ~ 18173182 (-) True G48476
XM_026940704.2 mRNA downstream 30475 17965747 ~ 17971182 (-) True ckba
XM_026940722.2 mRNA downstream 32103 17965747 ~ 17969554 (-) False ckba
XM_034302847.1 mRNA downstream 67739 17926887 ~ 17933918 (-) False si:dkey-196h17.9
XM_034302846.1 mRNA downstream 69428 17926887 ~ 17932229 (-) False si:dkey-196h17.9
XM_034302845.1 mRNA downstream 69428 17926887 ~ 17932229 (-) False si:dkey-196h17.9
XM_034303123.1 mRNA upstream 36832 18047425 ~ 18054897 (-) False ttl
XM_026944510.2 mRNA upstream 36832 18047425 ~ 18054897 (-) True ttl
XM_026939061.2 mRNA upstream 53232 18063825 ~ 18081466 (-) False ikzf1
XM_026939053.2 mRNA upstream 53232 18063825 ~ 18081466 (-) False ikzf1
XM_026939048.2 mRNA upstream 53232 18063825 ~ 18081466 (-) False ikzf1
TU56951 other downstream 340273 17657581 ~ 17661384 (-) False col13a1
XR_004577786.1 other downstream 427235 17562332 ~ 17574422 (-) False LOC113538666
XR_004577787.1 other downstream 427235 17562332 ~ 17574422 (-) False LOC113538666
TU56907 other downstream 525596 17471187 ~ 17476061 (-) True cisd1
XR_004577772.1 other downstream 1018928 16979131 ~ 16982729 (-) False morn4
TU57664 other upstream 319775 18330368 ~ 18613401 (-) True lrmda
TU58169 other upstream 1305894 19316487 ~ 19319733 (-) True G49195
XR_004577815.1 other upstream 1625245 19635838 ~ 19667661 (-) False atrn
TU58944 other upstream 2347341 20357934 ~ 20369097 (-) False gng2
TU58943 other upstream 2347395 20357988 ~ 20369097 (-) False gng2

Expression Profile