RNA id: XM_026944059.2


Basic Information

Item Value
RNA id XM_026944059.2
length 7770
RNA type mRNA
GC content 0.50
exon number 35
gene id pcnx2
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 9350060 ~ 9379729 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCATTGAGGGCAATAGAAAGGAACATCACATAACAAACACTCCtgatctccacacacacacacacacacacacacacggtcctTTAATGATGGCACACCAACAAGACGACGAGAGGACGAGAAGAAAAGCCGACGCATTTCGAGGTCCTGTATTCTAAGTGGAACCATCCGCAACATGTAGGGTTCTGATTTCCCGGGGGAAGCAGTGGAGGAGATGGCGATGGTGAGGGCGATGTGGCTCTAGTCTCTGCCTCAGTGAGGATGGGCTCGCAGGCGCTGCAGACGCTCCGGCAGGGGGTGTGGGCTTCCCTGACCGGCGGATGGTACCACGACCCCGAGCAGAATAAATTCAACAACTCCTGCCATCTTTATCTGTGGCTCTTCCTGCTCATGTTGCCTCTGTCCCTGCATCTGGCTCTTCCACCCACCAGTCTGGCCCTCAGTATTTACTGTACCTCAGTGACTGTTTTCTTCATCCTCATTAAGATGGTGAACTATCGCCTTCACCTAATGTTTGATGAAGGTGAAATTGTGCCCCGAAACAGTGTGTCTGACATCAGCAAAGGtgcagaaaaaaagagtaatGCCTCAGACACCTGTCGTCCAGCCAGCTTGAGgaaGAGCAGCACAGTACCTGATAGTGTTGCCATGACAGTATTGACTAGAAACAGGGCAAGTCCAGTAATCCAAGTCACAGTGAAACAGACTGAAACAGACCCGGGACTGATTGGGgaGTGCTCAAAAAAGGACTCAAAACACATAGATGGCCAAGATGACACATCCTCTCAGAAGACGGGTAGGGAAAGAACCGAAGCTGAGGAGAAACTGACCCCTGAAGATGCATTTAGTCCCAATACTGACCAATCAGCCCCACTCTTGCAATCAGAGCAGAGACAGCCAACCCAAGGggacacagctgatgaaggcCTGCCCCCTTCTGCCAGCAGTGAAGAGGAGAGGATCCAAGAAGAAGCTGAGAAAGAGACACCACCACTTCCAGAGCCCGTCAACACTGGCAGCAGGTCCTCGGCGGCTAAAGAGgctgaggaggaagagaagcCTGAGGAGACCTACTGCTCGGATGAAATCTCCGTGGTACTGGTTGACAATTCTGGTTTATCGACCCGCCTGGACGAGAATGATACTGTGAAGATCGTTATCACAATGAGCTGTGACCCTCAGACAGCAGCGGAGCTGGAGGAGTCAGTCAGACTCAGCCTCCTGGAGTCGGCTCAATCCCGCCTAGCTCAGCAAGACCAGATGGGGGATGCTCCTGTCAAAATTCCAGTCATTACCTTTGATTCACCtcgagaggaagaagaaagctGTGTCAAAGATAATAAAGAAGGGAGGCTAAATCCTAATGAATTGTCTCCTCAGGAACAGGCTGTGGCTCATGAAAGTCAAGACCCAAATGAGCCAGTTGGGTCCAGTTCTGCCCAACAGGAAGTATTGTCCAATGAACATGAGGCAGAGAATCCCAGTCCGAACACTAATAACAGCTCCTCGGGCATTGATGTGCGCTCCCATCCAGATGAGAGCGAGCACACTGAGCTGAAGTCAGACACTGATGGATTCTTGCAAATCCCTTCTGGCTTTGGGAGgtgtggtggaggaggaaggcTGCATGCAAGAGGACTTAGCATTGACAGTGGAAGGGACGCTGTCCTGATTGGCCACCGAGCCAAATCCAAGCTGCAGACCATGACCTCATCTAAGTCGGACTTAGAGGACAAAGAGGGCCAGTTGCCCAATGAGTCCAACTTTGTGGAGTTTGTTTCAATGCTGGAGTCCATCAACAGTACCAGAAGTGGGGGAGGGAAGCAGACAGAGGATGAGCAGAAGGAGGAGCAGAAAATTAAAACAGATGAGGAGACTACAATGCTGGTGAAGAACTTAGAAAGCACAGATGAGGCTGGACAGCAAGGTCCTCCAAACCCTCCGAACAGTCTGGCTACGGACACACTGCACAGCCTTCCAGAGAAACGGATTCCCATCGTCTCTCCTGACAGTCCTCAGACAGATAAGGAGAGGGATCCAGACTATGACTCTCTGCCCTCTCAGACGTCTCAATCAGAGAGCTCAATGCTGCAGGTCATCTGTAGACCAGAAGCAACATCTAAAGAGGAGGCTTATACCTTCCACACAGTGCACAGAGACAGACCTCGAAAGCTGTACAATGAAAGGGCGTTAAATTTACCTCTTGGAGCTGAACTGATCACGGGGAACGTATGTGATCTCCTTTCCACGTCCTCCAACTCGGAGGGCCAGGATGGGTTAGTGGGTGGGCATCCCGATTGTCCGTTTCAGCGCCGCATGATTCCAGCTCACCGGCTTCGGCCCAGGAGAACACACCCCGAGATCTTTCAGGAGGAGGATTCTCTTGACGACTCCTCTGACACGACTACTGAGGAGAAGCCATCTCGGAAGCTCTACTATAAGATGAAAATTTTTCCTGGGAAATGGATCAACATCTTGTACGATCGGCTGACCTTAATGGCGCTGCTGGACAGGAATCAGGACTGGAAGGAGAACATGGCTGCTGTGTTTTTAGCATTCCTGGTTGCTTTTCTGGGCTTTGTGCTCCTGAACCATGGTTGCTTTAAGGACTTTTGGGTTTTCCAGTTTTGTCTGGTCATGGCCAGCTGTCAGTACTCCTTATTAAAGAGTGTCCAGCCAGACGCAGCATCACCTACTCATGGACATAATCGAATCATTGCCTACAGTCGAGCTGCATATTTCTGCATGTTCTGTGGCCTTATTTGGATTCTGGAGTTGAAGCTAAAAAGATCAGACCTTCCTGTGTTCACCTTATACGGCATTACGATTGTAATGTCGGACATGCTCCTATTTGTACAAGATATTTTAATTGGATTTACATACTGCTTTCCAATAACCTTCCTTCTTGGCCTCTTCCCACAAATCAATACATTTGTTATTTACTTTCTCGAGCAAATTGATATACACTTTTTTGGTGGAACAGCTGCAACTGGACTGTATTCAGCCTTCTACTGTATAGGGAGGAGTCTGTTGGTGTTAACATTACTGTATGGATTCTGTCTTGGTGCGCTGAAGGAACCTTGGAACGAGCAGCACATCCCAGCCCTGTTCTCTGGGTTTTGTGCTCTGCTGGTAGCCCTGTCTTATCATCTCAGTCGACAAAGCAGTGACCCGTCTGTACTATTCACTTTGTTTAAGTCCATATTCATGCCAGCATTGGGGGAAGACGAGGTGGAGGAAGAGCCCTCTGAGAATGAAGATCCTCTTCCAAAGAAGCTCCAGAGCTCAGTGAGAGAGATACTGATCTCTGATCTGCTTGTATGCACCGTCGCTTCAGTTTTGACTTTTGCTGTTACTGCCAGTACTGTCTTCCTGTCTTTAAGGccCTTTGTCACCATAGTGCTGTATGCCCTGGCAGCAACCGTGGGCTTCGTCACCCACTATCTCATCCCTCAGTTACGCAAACATCATCCCTGGTTGTGGCTCTCACAGCCAGTGCTTAAGAGTAAAGAGTACTCCCAGTTTGAACCCACAGAGGATGCTCAGCTGATGTGGTTCGAGCGGCTCTATGTAGGACTCTTGAGCTTTGAGAAGTATGTGGTGTACCCTGCCATTGTGCTCAGTGCCCTCACTAATGATGGCTTCGCCCTCAGCCACCGGAAAAAGCTGGGTATACACTGTGATGTCTTATTGATGACAGTTGCTGGGATGAAGCTTCTGCGCTCGTCCTTCTGCAACCCCAGCTACCAGTTCCTCACGCTCATCTTCACCATCGTTTTCTTCGAGTTCGACTACAGCAAGGCTTCTGAGACCTTCCTGCTCAACTTCTTCCTCATGTCCATAGTCTTCCACAAGCTCTGGGATCTTCTGCACAAGCTGCACTTTGTTCTAGTCTACATCGCTCCATGGCAGATAGCATGGGGCAGCGCTTTTCACGCCTTCGCCCAGCCCTTCGCCGTGCCACATTCTGCCATGCTGCTGGTGCAGACATTAATCACCACCGTCTTTTACACTCCACTGAGCCCGTTTCTGGGCAGTGCCATTTTCATCACATCCTACCCACGTCCCGTCAAGTTTTGGGAGAGAAACTACAAcacaaaacGTATCGACAATTCCAACAGCAGACTGATGTCTCAGATTGACAAGGATACCGGCTGTGATGATAACAATCTGAACTCGATCTTCTATGAGTACCTGACACGTTCGCTGCAGCACTCTCTGTGCGGGGATCTGCTGCTGGGCCGCTGGGGGAATTACAGCACAGGCGACTGCTTCATCCTGGCCTCTGATTACCTCAATGCTCTCATACACATCATAGAGGTTGGCAACGGCCTTGTCACCTTCCAGCTGAGAGGTCTTGAGTTCAGGGGCACGTACTGTCAGCAGCGGGAGGTGGAGGCCATTACTGAGGGCGTGGAGGAGGACGAGGGCTGTTGCTGCTGCGAGCCGGGTCACCTGGCCCACGTTCTCTCGTGTAATGCTGCATTTAATCTGCGCTGGCTCGCCTGGGAGCTCACCACCACCAAGTACGTGCTTCAGAGCTACAGCATCAGTGAGAACAACGCAGCCACCATGCTGCAGCTCTACGACCTACGCAAACTGCTCATCACCTACTACCTCAAGAGTATCATCTACTATCTGGTGATCAACCCGAAGCTACAGACATGGCTTAAGGAGCAGTCGATCCACGAGGCCCTGCAGCCGTACAGTAAATGGCACCATATAGAGAGAGACCCAGTGGTTTTCAGTGTTAAGATTGATGAGGACTACGTCCACTGCCTGCAAGGGGTCACCAGGGCCAGCTATTGCAACGTCTATCTCGAGTGGATCCAGTACTGCGCCGGCAAGATGGAGCAACCGGTGGACTGTGATGAGGATTCTCTGCTGGTCACGTTGTGTTTTGCTCTGTCGGTCCTAGGCAGGAGATCTCTAGGCACTGCCTCGCATAACATGTCCAACAGtttGGAGTCCTTCTTGTACGGCTTCAGCACCTTGTTTAAAGGAGATTTCCGCGTCGCCACAAAGGACGAGTGGGTCTTTGCTGACATGGATCTGCTCCAGAAGGTGGTTGCACCAGCGGTTAGGATGAGCCTCAAACTTCATCAGGACCACTTCACGAGTCTGGAGGAGAGCGAGGAGCCGGCCGTGCTTTACGAGGCCATCAGTACATACAGGAGCTCACTGGTGATATGTGACGAGGGCGACCCGGCGTGGCGTAAGGCCGTGCTGTCCAGCAGAGATACACTGCTGACGCTACGCCACACACTGGACGACGGCAACGACGAATACAAGATCATCATGCTGTATAAACGCTACCTCAGTTTTAAAGTCATAAAGatCAATAAAGAGTGTGTGCGTGGGCTGTGGGCAGGACAGCAGCAGGAGCTGATCTTCCTGCGTAACCGTAATCCAGAGCGAGGAAGCATCCAGAACTCAAAGCAGGCACTGCGGAACATGATCAACTCGTCATGTGACCAGCCGCTGGGTTACCCCATGTTCGTGTCTGCCCTCACCACCTCATACGCAGGAACACACAAGCACACGGGCAGCGTCTGGGGCGGCACGCTCAGCCTCGAGGGCATCCGCACATGGCTCTGCTCCCGGTGGCTCCGTGTAAGGAAGGACAATCTGACGAGTTGTAACAGCGGAGTGAACATGGAAGACGTGGACTGTGCTGGCTCTTCTGTTAGTCATACTCACAACTCCGTCACATCCCAAAGCACCAGCACACACCAGCCGCATCCATGAAGCTCACGCACCCGACACCACAGTACAGGACGCCGTGAGTATCGCAGTGGCTCTGTGCAGCCTCAGTGTCAGCGAGCCCCAGTCACCAGTCGCTCAGGGCCGATCCTGGATCTCCAGCAGGGCTCAGGCTCTAACGGCGTCATGCAGCGCCTCTCCAACAGTCAGCTGTCCTTCAACACCTCCTCCATCGCCTCTGTCTTCTCCCAGGTGCCGCGTGTTTCTGCGGCGGGCGCCGTGCTCTCAGCTCAGCCACGCTGCAGTCAGgcctcctcctccagctccacTCTCAGCCTGCTGTTCGGGAAGCGCAGCTTCTCCAGCGGTCTGGTCATGTCGGGTCTCTCCGCCGCTGAGGGAGGaaacagcactgacacacagtCATCCAGCTCCGTCAATATCATCACCCCGGGACCATCAgtacgccacacacacacacagTGGACATCAGAAGCGTATGAGAGTATAGACGCCACATCCACTGTGACTTCAGGGCCAAAAGACAACACAGCATCAGGTGAGAAGAGCCAGGAAGGGTCAGGCTCGGGCTCGGGCTCAGGCTCAGGCTCAGCCTTCCACGAGAACTCAGAGCAGAAGAGCACCTGAGAGCTTTTCAGCATGTCCACACAACTCACCAGACATGATTTATAAACTAAATCACTGTAAAGGTTCGATATTAAAGATACATTATAGAATGGGGTAGTAAACATTCCAGTAAGACTCTAGTGTGTTGAGTTGGATTAAGTGTAGCAGATCTGAGCACTGAAAGTGAAAGATGTCCTGTGGGACTGTGATCAGGAGACGATGAACTGTGTGTTCAAGCATTCTTTCAtacattcattcttttattcaaGTGCTTTACActggtcagggttatggtggatccggagtctatacCGGAATCACTGGGCTCgagtacaccctggatgggatgccagtatattccatacacacacacatatatgtatatttgcaCACTTGTTcactactggcatgtttttgggaggttggaagaaactggagaatccagaggaaacccactcacacacaagaagaatgtgaaaaacacacagccaGTAACCTGAGATCTGGATCGAACCGgggaccatggagctgtgaggtggcaacactaccgtCATCCACAGACTGTAAGATCTCACTGACGCATGTAGCCTCcctttacagaaaataaaaacgaCAAACAGACCAACAAGTCACTTGAAATTTGTCCGTCACTGCTAGGGGGTTTGTATACtgacaaataatataaaagaggATGAGAAGTGGAATGCTTGCTCTGACACCCTGCACAGAATATTCAACGCAAGAACAAAATGAAGTATAATTTCCTTAGCAGTTCATCACTGGACATTAGACGGGGAACATGATCATCATCGTGTCGCTGCTTTATATATGCACAATGGCTCCCAAAGCATGGACACTACAAGAAATTCATTCCGATGTGCATTTAACCACAAAAATTAAGACACTTGGTATCTTCATTAAgatcttttctcatttttcagattttaataCAATGCTGGtggattttaaatattttcagcaTCATAAGCAGCCACATCTGTTATGTGACAGTCTAACATATTTGGCACCTGCAGCATGTGCTTTATTTTTCGTTAATTAAGATGGTAGCGTGATGGTTAATTAAGCCTGAAGTGTCAATAGTACCTCACAAAAATGACCTCATCTAATAGAAGTATCTGCTACAATGGGTCTGTACGGCATTCGGACTGTCAAGCAAATATTGTCTAACAGATTTGGACACGTATGTAGATAAATGACTCCACTGAAGGAGACTCAGAATCGTCTGTTAATGATAGTATTCACCTTTGTGTACACAAGATGAATACACTGTGTATGTcatgttgtattttttgtttaatgataTTGGTATTGTTAAATCCTAAACGATTGAAAGCTCATAAACATGGGAATGACTTTCTCAAACAGGAATCCACTcctcaacatgtttttaataaaacaaaactgctGACTAGTCTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51072 lncRNA downstream 8138 9317428 ~ 9341922 (-) True G43198
TU50882 lncRNA downstream 332424 9016202 ~ 9017636 (-) True G43029
TU50844 lncRNA downstream 488552 8857258 ~ 8861508 (-) True G42994
TU50831 lncRNA downstream 580874 8767988 ~ 8769186 (-) True G42987
TU50814 lncRNA downstream 595164 8754151 ~ 8754896 (-) True G42970
TU51168 lncRNA upstream 2979 9382708 ~ 9412002 (-) True G43270
TU51261 lncRNA upstream 136982 9516711 ~ 9517005 (-) True G43352
TU51431 lncRNA upstream 148787 9528516 ~ 9528727 (-) True G43509
TU51505 lncRNA upstream 379747 9759476 ~ 9760212 (-) True G43569
TU51522 lncRNA upstream 381515 9761244 ~ 9761467 (-) True G43586
XM_026932135.2 mRNA downstream 81715 9244541 ~ 9268345 (-) True oprm1
XM_026933661.2 mRNA downstream 121267 9224876 ~ 9228793 (-) False sf3b5
XM_026942296.2 mRNA downstream 201352 9144255 ~ 9148708 (-) True agt
XM_026940775.2 mRNA downstream 221002 9097987 ~ 9129058 (-) True pgbd5
XM_026934827.2 mRNA downstream 397312 8946682 ~ 8952748 (-) True LOC113539201
XM_034303158.1 mRNA upstream 29341 9409070 ~ 9458592 (-) False il22ra2
XM_026945186.2 mRNA upstream 29347 9409076 ~ 9458592 (-) False il22ra2
XM_026945175.2 mRNA upstream 29347 9409076 ~ 9458592 (-) False il22ra2
XM_026945200.2 mRNA upstream 29347 9409076 ~ 9458554 (-) False il22ra2
XM_026945192.2 mRNA upstream 29347 9409076 ~ 9413897 (-) True il22ra2
TU51003 other downstream 121176 9224881 ~ 9228884 (-) True sf3b5
TU50809 other downstream 496266 8801243 ~ 8853794 (-) True G42967
TU50810 other downstream 496266 8849109 ~ 8853794 (-) False G42967
XR_003403913.2 other downstream 566262 8755869 ~ 8783798 (-) False zdhhc5a
trnae-cuc_7 other downstream 879631 8470358 ~ 8470429 (-) True trnae-cuc_7
trnag-gcc_1 other upstream 2328885 11708614 ~ 11708684 (-) True trnag-gcc_1
TU53378 other upstream 2765166 12144895 ~ 12152506 (-) False tmem254
TU53492 other upstream 3144907 12524636 ~ 12534075 (-) False LOC113537616
TU53486 other upstream 3151714 12531443 ~ 12534075 (-) False LOC113537616
TU53537 other upstream 3252084 12631813 ~ 12633015 (-) False LOC113539135

Expression Profile