RNA id: XM_026944130.2


Basic Information

Item Value
RNA id XM_026944130.2
length 5451
RNA type mRNA
GC content 0.43
exon number 25
gene id LOC113544990
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 9668721 ~ 9719918 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCTGCTGCCGCTGAGCGCGAGAGCTCATTGGAAACTGCGTCGTCACCACGGAAACCTGGACTGCTTCCGCGTGAAGGGCTCTCCAGCAGGGGGCACAGTGAGATTTGATGCAGCCCCTGCACGTCCACTTATTGCCAGTCCACGCAGTGTCTCTGCGGTACGGATCACGCCTCTGAGGACCATGAAGAGCTCTCCAGATCTGATGCCCACTGAGTTGGACCCAACTCGTGTGTGTAAGGGGAAGGGGGCTGTTACTCTGAAAGCCACATTAGTGCACGTGGATGATGGAGACTGTATCACCCAGGAACGGGATGTGAATCCAGCCAAGGGTGAATGTCACAGAGCGGTTAATGGAGATGCCACAGAAACGAATCTGGCAGAGAAAAGGCTAAATAGCACCGGAGCTGATTTAAATTCAGACCAAGTCAGTAAGGCTACAACACAGGTCGAGTGTCCTATAAGCTTGGGTCTGAGTGATCTCCCATCATCAGCCACTGTACCATCTGTGTGCACACCAGACCGCAGTGTATACCCAACTATTGTTCTGTTGCAGCACGGCACAGATGCTGTAGAGCAGCAGCACAGAGTGTGTGATCAAGGCTCCACCGAGACTCAGGTCTGTCCTCCACCTGAAGATCCTCAAAGATCCTCTACACAGATGGAGGGCAAGAGAATGATGATTACTGTTCACCCAGCGTCCCCTGTCCCACTGGAGAAGCCCCGAGTCCCAGTACGGAACACAGAGAAGTCCAAGGACTGGTACAAGAACATGTTCAAACAAATCCACAGAGTTCCAGAACCTGTTGAGGAAAATCCATACCGTCCCACCTACATATTCCCTGAGAGCTATGACAGGCCACTGAAAACCAGAGATGACAACTCTTCACATATGGATGACTATGGGAGAAGTGTTCCTCGGTCTAAAAGTGCTGTAGACATGGGCAGTTCACAGTCAAGACGAAGAGTCTCTATGCCAACTCGAACGTCTTCTCTACGGCCAGAAAGAAATGAGTGGGAGCCCCCTGACAAGAAGGTGGACACCAGGAAGTATCGTGCTGAGCCCAGGAGCATCTTCGACTACGAGCCTGGGAAGTCGTCTGTGCTGAGGGCGGAGAGGCCGGACTTAACCCCTGAAGATGTAGATTTAGAGAATGAACCATGGTATAGATTCTATTCAGAGATGGAGTTTGGCAAAACGAGTGCCCCCTCTTTCACTCCCTTGGAAACAGCCTCCGACCTGCAGCAATACCCGGCGTGTAAACCGGGCCCCAGTGTGGCGGGGAAGGAGAGCGGCTCGGCTGGCGCTGAGCACGCAGCTCCAGAATGCGATCGGCACATTTACAAAAGTGTCCTGGAGGGTGGCGACATCCCACTGCAAGGCCTGCGAGCACTTAACAAACGCCATCCCAGTACTTCTTCTAAAGACTCCGAATCCTCACAGCCGTTAAGCCAAGGAGATCAAGGGGAAAACCCAGATGAGGTGGCCCGCAGACGCTACGGAGACAAAGAGAAAATTCTGGAGGAGCAGAGACGTTTGAAGCGGGAACAAGAGGAGGCGGACATTGCATCACGCCGGCACGCAGGCCTAGTCCTCACAAATCAGCAGTTCATCACCAATGAGCGCTTTGGGGACTTGCTCACCATCAATGACTCAGACAAGAGGAAGTCCGGCCCAGAGAGGACCCCTGCCCTGGCCCTGTTTAACTTTAAAGCGGAGACTTTAAAGGAGCTGCCATTTCAAAAAGGAGATATTGTGTACATCGTTCGGCAGGTGGACCAAAACTGGTATGAAGGAGAGCATCATGGTAGAGTTGGCATCTTCCCTCGCAACTATGTTGAGCTACTACCCCCAACAGAAAAGGCCCAGCCCAAAAAGAGTGCTCCAGTTCAAGTGCTGGAGTATGGAGAGGCCATCGCCCGCTTTAATTTCACTGGGGACACAGCTGTCGAGATGTCGTTCAGAAAGGGAGAACGGATAACACTCATTCGTAGGGTTGATGAAAACTGGTATGAAGGAAAGATTTCAGGCACCAACCGACAAGGCATCTTCCCAGTCACTTACGTGGAGGTGCACAAAAAGCCTCGTGTTAAAAATGGAGTGGACTACCCTGATCCTCCCCTTAGCCAATCACCACATCGCAGCACAAACGCCTCCCCACAGccTTTGAAGAATGAAGGAGATTACCATGGGAGATCCTCGAGAAGTCCGGTCATGTTATTTGACATCCAGGACAACAACATGAACGCCAACTCATTCACGCAACCCCAGTCCCAAAGCAGCAGCCCCGAACCTGGACGCCTGAGCTGCGGCATaTTCCAGGCTTTATACAGCTATGTGCCACAGAATGACGACGAGCTAGAGCTGCAGGAGGGAGACCTTGTGAACGTCATGGAGAAATGCGATGACGGCTGGTTTGTGGgtacaTCTAAAAGGACAAAACAGTTCGGCACCTTCCCAGGGAACTACGTGAAGGCCGTTAACTTGTAATATGTGAAAATGTCTGATGTGTATGTAGAGATTCTAACACTATGTTTATAGCGGCCTGTGTGGGACACTGTTACTGATGAACTCaagtgtttgatttttttttttctgtcagtatTGTATCTTGCCCAGGTGAATGTCCAGGTATGTGATCAGTAAGGTTTGTAGCATGTCGGCAAGAATTTTGTAGTAAAACTACGAGGATCAGCTTGTCAGCTTTCACACATTGTTTCATATAATatatgttatttacattttgtttttatttaaatataaatgtttgtgtCCATAgtgtataacattttttttttactgaatcacATACCTGACATTAACACAGCAAAAACTCTAAAATAGATGAAGCACCAGTGTTGGAAAGGGTCAGAGTGTAGTTAAAGGCACTTAAAGGAGGGTACCAGTATTGAAGGTTAAAGGACCGGACAAAGGTCAGCAAAAAAAAGATGGATTTACATAAAACTTGAAAATCAGTTTCGGACTCCCTGTGCATATGAGAGCAATATAGATGATGCGGTTGAGTTCCTGTTCAGATGTGAACTGCCACATGGACTGATATCACTCAACTATAGGCACTTAATTCTCTGTGGACTAATCCACAGGATGTTCTGGGGATCAGGAGTAGTTAGGTTCCACCAAAATTCTGCCTTGAAAACATCCTGATTTGCtctcatcttttattttatacaaacacaaaaaaggaacAGTTCCTTGATTGTCTCTCCCGTTTCACACATTGGCAGTCCTAATCCTCCTTTATCTAACTGAAACAAATCTGTTACTAGACATAAAAATTGTCTGCGTTTTTGTAAATGACTAAGTCATGCTAAGCTTCATTTTGGTGTCAGTAGATCCGCAGATAAATTTGaacaactgtaataaaacacttagtaGTGTGACTAATGTTTGCCTTTTATAAGGTATGTGCAGTTAGACAATGGAAGTCTTGCaacctaaaataaataaaataccagTCAAAAGTGAGGACAGACCTGCTCACATAAAGCTTTTCTCAATTTTAATActattttcaaataataatgaaaaaaaaaaataacatagtGAAACAACATATGGAATTATACCATGAATAAGAAAAgtataaaacaaatcaaaactataTTTTACATCcttaacagtattcctgatgCGCCTTGGCATCATCTCAACCAGCTTCATTAAGGACCTTTATCCAAAATATCTTTAATACTGTGAAAAATATATCCAATCtagtgtccaaacttttgactagTATGTATTCCATTGGCTCATGTGCTACAGCAGTGTTAGGGTCAAACAAGAGGTAGGAAAAAGTGCTGCTAGGAGAatcaaaaaaatcagaaaaaaaaaaaactagaccTCACAAGGTAAAAGGTAAAGtattattgaaaattaaaaaaagaagtttaaacatTAATAGAGAACAgggaataaaatgaatattttaggACTATAGAGGCTATTTTAGGAACCAGTTGAGTAATATAAGGCACTGTAAATACAGGTCATTTTATCATTATTCTTGTAATATTTCAAATTATTCTTGAAATATTCTTATTTTCCTAAATCTGAAAATATGACGTGGATGAGACTGGTCCTCCTACGAGCACATATGATTACCTTAATATGTTGCTGTACCTCACAGGCCTGTGTGATATATatctaaatgcatttttttctctttcgaAAGCTGGGAACGTGAAGGACAGCATGCATTAACATGGGTTTATAGAACTTTAATCCTGGTGTGACTGCAAAAGTTTTGGGGAAATTTCTGATCTGTATGAAATGCCGTACCTCCTTCCTTTCTATCTTAAGTGCCATTTATATGAGTAAGCTACATTAGGATCTTTTTTATCTGTATAGTAAACTGACAAGCTATTTATGATAGTTTAGTTACTTCTGCTGTAGCTGCATTTCCAGTTTGGTGGAGATTGaacaagaggaaaaagaaatgatCGCTAACTAGACCTGATATGAAGAACATACCATGCACGAATTTCTACACAGTGTTGCACCTCTGACAGCCATAAAGTATTTAAGCTAATGAGCTAATGAGCTAATGACGGCTGAATACTTTTGCTCCCTGTATTATTGTGCATTGCATTCCATATCATGCCACAGAGGTCACTACTGAGCATGTGTGGAGTGTGTCACGTTTAACTGGGCTCCTAACAGATCCGCATTCAGTATTTATCATATTCCTGGTTAATAATATCATATATAGCATATATCATTGTCTGGCAGCGGTTATCATCAAATTTTAACCAACCAAGACCCTGATTAGATTCACATAGGTTTTAAAATTCATCACAGCTTTATTCCATTCAAGTGCATGAAACATCATGCGATATACAAGATAAGCAAAAGAATATAGTGTCTTGAGAATCCTGTGCTTTGGACATAAGCAGAGACGAAAGAATTGTACTTGTAAATATGTAtagtataaatgaataaaatgtttgaagTCACAACAGCCTCTAGGAATATAGTTTATATTACAGGAAGAGATTTAGGAAAGCACAGTGAGTTGCTTTTGGTGCACACGCTCtgatatgaatgaatgacagaTTTCTAACACTGTGTTAGGATCCAGATGCCTTTTGTCTCACAGCTTTGTTAACCGTGCCTCGTttttcgtttttgtttttttcattttgcctACATTGAGAAGGAAATCCGTGTTACTTTGTAGGATATGATGCTCTACCACAAGTGTGTCACAGGAGACAATTACCAAGATCCTGACTGCAATCGCTGGACATATTCATAAAGAGTGTGACATAATGCCTGTAGTGATCTTCCACACGCAGAGGCTCACATTGCAGTTAGATGTTGTTTTCCTTTATTTGCGGTGCAGTTACAGATAGAATGTTGGATTTAAACACGCTATTTACTGCTGTGATTTCATTATTatgcaatatttaataaaatgtattaaagctTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51431 lncRNA downstream 139994 9528516 ~ 9528727 (-) True G43509
TU51261 lncRNA downstream 151716 9516711 ~ 9517005 (-) True G43352
TU51168 lncRNA downstream 256719 9382708 ~ 9412002 (-) True G43270
TU51072 lncRNA downstream 326799 9317428 ~ 9341922 (-) True G43198
TU50882 lncRNA downstream 651085 9016202 ~ 9017636 (-) True G43029
TU51505 lncRNA upstream 39583 9759476 ~ 9760212 (-) True G43569
TU51522 lncRNA upstream 41351 9761244 ~ 9761467 (-) True G43586
TU51523 lncRNA upstream 41720 9761613 ~ 9761812 (-) True G43587
TU51524 lncRNA upstream 42404 9762297 ~ 9762556 (-) True G43588
XR_003404277.2 lncRNA upstream 62772 9782665 ~ 9806230 (-) True LOC113542224
XM_026934453.2 mRNA downstream 38712 9530170 ~ 9630009 (-) False khdrbs2
XM_026944230.2 mRNA upstream 3688 9723581 ~ 9735207 (-) True pik3ap1
XM_026942068.2 mRNA upstream 96395 9816288 ~ 9828253 (-) False tacr2
XM_026942060.2 mRNA upstream 96395 9816288 ~ 9828253 (-) True tacr2
XM_026934239.2 mRNA upstream 177344 9897237 ~ 9902912 (-) True hnrnph3
XM_026939846.2 mRNA upstream 224347 9944240 ~ 9959459 (-) False nfkb2
TU51003 other downstream 439837 9224881 ~ 9228884 (-) True sf3b5
TU50809 other downstream 814927 8801243 ~ 8853794 (-) True G42967
TU50810 other downstream 814927 8849109 ~ 8853794 (-) False G42967
XR_003403913.2 other downstream 884923 8755869 ~ 8783798 (-) False zdhhc5a
trnae-cuc_7 other downstream 1198292 8470358 ~ 8470429 (-) True trnae-cuc_7
trnag-gcc_1 other upstream 1988721 11708614 ~ 11708684 (-) True trnag-gcc_1
TU53378 other upstream 2425002 12144895 ~ 12152506 (-) False tmem254
TU53492 other upstream 2804743 12524636 ~ 12534075 (-) False LOC113537616
TU53486 other upstream 2811550 12531443 ~ 12534075 (-) False LOC113537616
TU53537 other upstream 2911920 12631813 ~ 12633015 (-) False LOC113539135

Expression Profile